Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G180400 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.2e-79 299.7 142 100.0
CiPaw.05G180500 Carya illinoinensis HOM05D009786 ORTHO05D012348 5.3e-75 284.3 141 94.3
CiPaw.05G180600 Carya illinoinensis HOM05D009786 ORTHO05D012348 2.9e-73 278.5 142 91.5
CiPaw.05G180300 Carya illinoinensis HOM05D009786 ORTHO05D012348 6.4e-73 277.3 137 94.9
CiPaw.06G066700 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.1e-59 233.4 140 77.9
CiPaw.06G066800 Carya illinoinensis HOM05D009786 ORTHO05D012348 1.1e-59 233.4 140 77.9
QL03p057604 Quercus lobata HOM05D009786 ORTHO05D012348 1.4e-56 223.0 137 76.6
Cfa009224 Carpinus fangiana HOM05D009786 ORTHO05D012348 3.2e-56 221.9 137 75.9
Haze_12260 Corylus avellana HOM05D009786 ORTHO05D012348 2.1e-55 219.2 140 73.6
QL03p057632 Quercus lobata HOM05D009786 ORTHO05D012348 1.0e-49 200.3 139 65.5
Prupe.1G060100 Prunus persica HOM05D009786 ORTHO05D012348 1.0e-14 84.0 135 35.6
Prupe.1G043900 Prunus persica HOM05D000256 ORTHO05D000119 2.3e-14 82.8 142 34.5
Prupe.1G059500 Prunus persica HOM05D009786 ORTHO05D012348 5.2e-14 81.6 139 35.3
Prupe.1G059600 Prunus persica HOM05D009786 ORTHO05D012348 5.2e-14 81.6 141 34.0
Prupe.1G219700 Prunus persica HOM05D009786 ORTHO05D012348 1.3e-12 77.0 144 31.9
Prupe.8G208500 Prunus persica HOM05D000256 ORTHO05D000119 2.8e-12 75.9 133 33.8
Prupe.1G060000 Prunus persica HOM05D009786 ORTHO05D012348 3.7e-12 75.5 144 31.9
Prupe.8G208600 Prunus persica HOM05D000256 ORTHO05D000119 4.9e-12 75.1 137 33.6
Prupe.4G236000 Prunus persica HOM05D000256 ORTHO05D000119 8.3e-12 74.3 114 34.2
Prupe.1G059700 Prunus persica HOM05D009786 ORTHO05D012348 1.1e-11 73.9 134 33.6
FvH4_4g05642 Fragaria vesca HOM05D061516 ORTHO05D035238 2.4e-11 72.8 118 37.3
QL04p080627 Quercus lobata HOM05D009786 ORTHO05D000119 2.4e-11 72.8 112 35.7
RcHm_v2.0_Chr3g0448291 Rosa chinensis HOM05D000256 ORTHO05D000119 5.4e-11 71.6 135 31.1
Prupe.1G219600 Prunus persica HOM05D009786 ORTHO05D012348 9.2e-11 70.9 115 35.7
Cpa.g.sc8.196 Carica papaya HOM05D009786 ORTHO05D012348 1.2e-10 70.5 115 37.4
TAR365G0089 Trochodendron aralioides HOM05D000256 ORTHO05D000119 2.0e-10 69.7 138 35.5
FAN06G4947 Fragaria x ananassa HOM05D000256 ORTHO05D000119 4.5e-10 68.6 126 36.5
RcHm_v2.0_Chr3g0448331 Rosa chinensis HOM05D000256 ORTHO05D000119 5.9e-10 68.2 127 34.6
Thecc.01G232200 Theobroma cacao HOM05D000256 ORTHO05D000119 7.8e-10 67.8 132 31.8
FAN05G2293 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.3e-09 67.0 144 33.3
FAN14G0909 Fragaria x ananassa HOM05D000256 ORTHO05D000119 1.3e-09 67.0 126 34.1
PGR044G1572 Punica granatum HOM05D000256 ORTHO05D000119 1.3e-09 67.0 138 29.0
Gohir.A08G046400 Gossypium hirsutum HOM05D000256 ORTHO05D000119 1.7e-09 66.6 132 31.8
TWI14G0081 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 2.3e-09 66.2 142 28.9
Gorai.004G058000 Gossypium raimondii HOM05D000256 ORTHO05D000119 6.6e-09 64.7 132 31.1
Duzib187G0570 Durio zibethinus HOM05D000256 ORTHO05D000119 1.9e-08 63.2 143 31.5
FAN17G1832 Fragaria x ananassa HOM05D009786 ORTHO05D012348 2.5e-08 62.8 133 30.8
FAN10G1492 Fragaria x ananassa HOM05D000256 ORTHO05D000119 9.5e-08 60.8 125 34.4
Manes.03G171600 Manihot esculenta HOM05D000256 ORTHO05D000119 1.6e-07 60.1 137 30.7
Ciclev10007012m.g Citrus clementina HOM05D010815 ORTHO05D011855 2.8e-07 59.3 107 33.6
Manes.03G171700 Manihot esculenta HOM05D000256 ORTHO05D000119 6.1e-07 58.2 145 30.3
TWI14G0459 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 8.0e-07 57.8 128 25.0
TAR362G1185 Trochodendron aralioides HOM05D000256 ORTHO05D000119 1.0e-06 57.4 138 29.0
CiPaw.04G107900 Carya illinoinensis HOM05D000256 ORTHO05D000119 1.4e-06 57.0 115 29.6
FAN11G2936 Fragaria x ananassa HOM05D026323 ORTHO05D012348 1.4e-06 57.0 114 30.7
FvH4_3g21860 Fragaria vesca HOM05D026323 ORTHO05D012348 1.8e-06 56.6 114 30.7
EL10As7g23807 Beta vulgaris HOM05D000256 ORTHO05D000119 2.3e-06 56.2 106 34.9
Sc05g0002250 Simmondsia chinensis HOM05D000256 ORTHO05D000119 2.3e-06 56.2 110 30.9
AL7G23410 Arabidopsis lyrata HOM05D008344 ORTHO05D011034 3.0e-06 55.8 140 27.9
Thecc.01G232100 Theobroma cacao HOM05D000256 ORTHO05D000119 3.0e-06 55.8 145 26.2
TWI14G1030 Tripterygium wilfordii HOM05D000256 ORTHO05D000119 3.0e-06 55.8 152 29.6
Sc05g0002240 Simmondsia chinensis HOM05D000256 ORTHO05D000119 4.0e-06 55.5 143 26.6
Prupe.1G059400 Prunus persica HOM05D029295 ORTHO05D035238 5.2e-06 55.1 135 31.9
Prupe.8G208800 Prunus persica HOM05D000256 ORTHO05D000119 5.2e-06 55.1 107 29.0
QL09p044329 Quercus lobata HOM05D000256 ORTHO05D000119 6.8e-06 54.7 111 27.0


User provided reference genes

Program Settings