Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G172800 Carya illinoinensis HOM05D004290 ORTHO05D005025 8.5e-81 303.5 143 100.0
CiPaw.05G172700 Carya illinoinensis HOM05D004290 ORTHO05D005025 1.3e-78 296.2 143 97.2
QL03p037189 Quercus lobata HOM05D004290 ORTHO05D005025 2.6e-66 255.4 145 82.8
Manes.06G074500 Manihot esculenta HOM05D004290 ORTHO05D005025 2.9e-65 251.9 140 81.4
RcHm_v2.0_Chr4g0436191 Rosa chinensis HOM05D004290 ORTHO05D005025 1.1e-64 250.0 145 79.3
Ciclev10033020m.g Citrus clementina HOM05D004290 ORTHO05D005025 5.5e-64 247.7 136 82.4
Duzib251G0274 Durio zibethinus HOM05D004290 ORTHO05D005025 7.2e-64 247.3 135 82.2
Nn4g23673 Nelumbo nucifera HOM05D004290 ORTHO05D005025 2.7e-63 245.4 136 80.9
Thecc.02G363400 Theobroma cacao HOM05D004290 ORTHO05D005025 2.7e-63 245.4 138 80.4
Cfa008781 Carpinus fangiana HOM05D004290 ORTHO05D005025 4.7e-63 244.6 151 77.5
Haze_11793 Corylus avellana HOM05D004290 ORTHO05D005025 6.1e-63 244.2 158 75.9
Sabra08G0086600 Salix brachista HOM05D004290 ORTHO05D005025 3.3e-61 238.4 135 79.3
COL.COLO4_07852 Corchorus olitorius HOM05D004290 ORTHO05D005025 7.4e-61 237.3 128 84.4
FvH4_4g28340 Fragaria vesca HOM05D004290 ORTHO05D005025 9.7e-61 236.9 136 77.9
FAN22G0640 Fragaria x ananassa HOM05D004290 ORTHO05D005025 9.7e-61 236.9 136 77.9
CANSAT64G1327 Cannabis sativa HOM05D004290 ORTHO05D005025 1.3e-60 236.5 134 78.4
FAN12G2228 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.2e-60 235.7 136 77.2
Prupe.1G302800 Prunus persica HOM05D004290 ORTHO05D005025 4.8e-60 234.6 139 79.9
QL03p036461 Quercus lobata HOM05D004290 ORTHO05D005025 4.8e-60 234.6 138 78.3
FAN17G1675 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.2e-60 233.8 136 77.2
Potri.008G114300 Populus trichocarpa HOM05D004290 ORTHO05D005025 1.1e-59 233.4 135 78.5
Aa31sc79G10 Aethionema arabicum HOM05D004290 ORTHO05D005025 1.8e-59 232.6 140 75.0
TWI31G0716 Tripterygium wilfordii HOM05D004290 ORTHO05D005025 1.8e-59 232.6 137 78.1
Lj3A1022T62 Lonicera japonica HOM05D004290 ORTHO05D005025 3.1e-59 231.9 142 75.4
MD13G1049100 Malus domestica HOM05D004290 ORTHO05D005025 3.1e-59 231.9 136 80.1
MELO3C005349.2 Cucumis melo HOM05D004290 ORTHO05D005025 5.3e-59 231.1 151 71.5
EL10Ac6g14527 Beta vulgaris HOM05D004290 ORTHO05D005025 1.2e-58 229.9 134 76.1
Sp5g23870 Schrenkiella parvula HOM05D004290 ORTHO05D005025 2.6e-58 228.8 141 73.8
Eucgr.B03066 Eucalyptus grandis HOM05D004290 ORTHO05D005025 4.5e-58 228.0 136 76.5
Gohir.A13G071200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 1.0e-57 226.9 136 74.3
Aqoxy3G03864 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 3.8e-57 224.9 138 75.4
CsaV3_5G028890 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.8e-57 224.9 140 71.4
Gohir.D13G069200 Gossypium hirsutum HOM05D004290 ORTHO05D005025 3.8e-57 224.9 136 72.8
Gorai.013G079300 Gossypium raimondii HOM05D004290 ORTHO05D005025 3.8e-57 224.9 136 72.8
Hund05546 Selenicereus undatus HOM05D004290 ORTHO05D005025 3.8e-57 224.9 140 72.9
AT1G68760 Arabidopsis thaliana HOM05D004290 ORTHO05D005025 2.5e-56 222.2 140 69.3
RcHm_v2.0_Chr4g0436181 Rosa chinensis HOM05D004290 ORTHO05D005025 2.5e-56 222.2 138 75.4
Potri.008G114400 Populus trichocarpa HOM05D004290 ORTHO05D005025 3.2e-56 221.9 141 70.9
RcHm_v2.0_Chr2g0142071 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-56 221.9 137 74.5
RcHm_v2.0_Chr2g0142081 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-56 221.9 137 74.5
RcHm_v2.0_Chr2g0142111 Rosa chinensis HOM05D004290 ORTHO05D005025 3.2e-56 221.9 137 74.5
Sed0004732 Sechium edule HOM05D004290 ORTHO05D005025 4.2e-56 221.5 140 72.1
FvH4_6g24180 Fragaria vesca HOM05D004290 ORTHO05D005025 5.5e-56 221.1 141 70.9
FAN14G4265 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.5e-56 221.1 141 70.9
AL2G27690 Arabidopsis lyrata HOM05D004290 ORTHO05D005025 7.2e-56 220.7 141 68.1
CARHR061580 Cardamine hirsuta HOM05D004290 ORTHO05D005025 7.2e-56 220.7 141 69.5
PGR102G2310 Punica granatum HOM05D004290 ORTHO05D005025 7.2e-56 220.7 138 76.1
A02p15320 Brassica napus HOM05D004290 ORTHO05D005025 9.4e-56 220.3 135 74.1
C02p25170 Brassica napus HOM05D004290 ORTHO05D005025 9.4e-56 220.3 138 72.5
arahy.Tifrunner.gnm1.ann1.IBNT6Z Arachis hypogaea HOM05D004290 ORTHO05D005025 1.6e-55 219.5 139 71.2
arahy.Tifrunner.gnm1.ann1.U655LF Arachis hypogaea HOM05D004290 ORTHO05D005025 1.6e-55 219.5 139 71.2
GSVIVG01011978001 Vitis vinifera HOM05D004290 ORTHO05D005025 1.6e-55 219.5 142 74.6
Ah.02g127350 Amaranthus hybridus HOM05D004290 ORTHO05D005025 2.1e-55 219.2 133 73.7
BcaB05g24409 Brassica carinata HOM05D004290 ORTHO05D005025 2.1e-55 219.2 137 70.8
Cc11_g10800 Coffea canephora HOM05D004290 ORTHO05D005025 2.1e-55 219.2 136 72.8
Nitab4.5_0013408g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 2.1e-55 219.2 136 75.0
RcHm_v2.0_Chr2g0142121 Rosa chinensis HOM05D004290 ORTHO05D005025 2.1e-55 219.2 137 73.0
BraA02t06593Z Brassica rapa HOM05D004290 ORTHO05D005025 2.7e-55 218.8 138 71.7
Thhalv10019297m.g Eutrema salsugineum HOM05D004290 ORTHO05D005025 2.7e-55 218.8 136 74.3
RcHm_v2.0_Chr6g0244161 Rosa chinensis HOM05D004290 ORTHO05D005025 3.6e-55 218.4 135 74.8
FAN09G0247 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.7e-55 218.0 140 70.7
PSO478G2631 Papaver somniferum HOM05D004290 ORTHO05D005025 4.7e-55 218.0 136 70.6
BolC2t08596H Brassica oleracea HOM05D004290 ORTHO05D005025 8.0e-55 217.2 138 71.7
Lj2g0025619 Lotus japonicus HOM05D004290 ORTHO05D005025 8.0e-55 217.2 142 70.4
Migut.L01112 Erythranthe guttata HOM05D004290 ORTHO05D005025 1.0e-54 216.9 136 71.3
FAN09G2488 Fragaria x ananassa HOM05D004290 ORTHO05D005025 1.8e-54 216.1 142 70.4
C04p37630 Brassica napus HOM05D004290 ORTHO05D005025 3.0e-54 215.3 138 71.0
Aqoxy3G03865 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 4.0e-54 214.9 138 67.4
ClCG00G001430 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.0e-54 214.9 135 67.4
ClCG05G023160 Citrullus lanatus HOM05D004290 ORTHO05D005025 4.0e-54 214.9 135 67.4
Dinv16527 Davidia involucrata HOM05D004290 ORTHO05D005025 6.7e-54 214.2 130 74.6
FvH4_4g28310 Fragaria vesca HOM05D004290 ORTHO05D005025 6.7e-54 214.2 137 70.1
FAN12G0523 Fragaria x ananassa HOM05D004290 ORTHO05D005025 6.7e-54 214.2 137 70.1
MD13G1048900 Malus domestica HOM05D004290 ORTHO05D005025 6.7e-54 214.2 141 72.3
Nitab4.5_0001178g0080 Nicotiana tabacum HOM05D004290 ORTHO05D005025 8.8e-54 213.8 136 72.8
AUR62007751 Chenopodium quinoa HOM05D004290 ORTHO05D005025 1.5e-53 213.0 139 70.5
ClCG01G005800 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.0e-53 212.6 175 60.0
MBI10_g35795_MAGBIO Magnolia biondii HOM05D004290 ORTHO05D005025 2.6e-53 212.2 133 67.7
HanXRQChr08g0214461 Helianthus annuus HOM05D004290 ORTHO05D005025 3.3e-53 211.8 135 68.1
MELO3C012202.2 Cucumis melo HOM05D004290 ORTHO05D005025 5.7e-53 211.1 135 65.2
MSTRG.7697 Avicennia marina HOM05D004290 ORTHO05D005025 7.5e-53 210.7 135 69.6
Glyma.01G090900 Glycine max HOM05D004290 ORTHO05D005025 7.5e-53 210.7 138 71.0
Sed0009817 Sechium edule HOM05D004290 ORTHO05D005025 9.7e-53 210.3 138 63.8
Psat2g074600 Pisum sativum HOM05D004290 ORTHO05D005025 1.7e-52 209.5 139 66.2
Ca_19617_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.2e-52 209.1 139 66.9
Ca_30768_v3 Cicer arietinum L. HOM05D004290 ORTHO05D005025 2.2e-52 209.1 139 66.9
Sc04g0006830 Simmondsia chinensis HOM05D004290 ORTHO05D005025 2.2e-52 209.1 135 70.4
AUR62002942 Chenopodium quinoa HOM05D004290 ORTHO05D005025 2.8e-52 208.8 139 69.8
Cc11_g10790 Coffea canephora HOM05D004290 ORTHO05D005025 2.8e-52 208.8 139 68.3
CsaV3_5G033840 Cucumis sativus L. HOM05D004290 ORTHO05D005025 3.7e-52 208.4 135 64.4
THA.LOC104821971 Tarenaya hassleriana HOM05D004290 ORTHO05D005025 3.7e-52 208.4 136 66.9
FAN07G1902 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.8e-52 208.0 137 69.3
Prupe.1G303000 Prunus persica HOM05D004290 ORTHO05D005025 6.3e-52 207.6 135 69.6
FAN12G2396 Fragaria x ananassa HOM05D004290 ORTHO05D005025 8.2e-52 207.2 137 69.3
Carub.0002s1532 Capsella rubella HOM05D004290 ORTHO05D005025 1.4e-51 206.5 137 65.7
Dinv05808 Davidia involucrata HOM05D000436 ORTHO05D005025 1.4e-51 206.5 141 68.8
FvH4_4g28300 Fragaria vesca HOM05D004290 ORTHO05D005025 1.4e-51 206.5 137 69.3
MD16G1050200 Malus domestica HOM05D004290 ORTHO05D005025 1.4e-51 206.5 134 74.6
SalBow8G1203 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.8e-51 206.1 134 68.7
SalBow8G5193 Salvia bowleyana HOM05D004290 ORTHO05D005025 1.8e-51 206.1 134 68.7
Prupe.1G302900 Prunus persica HOM05D004290 ORTHO05D005025 2.4e-51 205.7 141 69.5
BcaC03g14984 Brassica carinata HOM05D004290 ORTHO05D005025 5.3e-51 204.5 137 68.6
DCAR_023699 Daucus carota HOM05D004290 ORTHO05D005025 9.1e-51 203.8 136 64.0
ATR1147G043 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.7e-50 202.2 134 63.4
DCAR_026707 Daucus carota HOM05D004290 ORTHO05D005025 3.5e-50 201.8 135 66.7
Phvul.003G024900 Phaseolus vulgaris HOM05D004290 ORTHO05D005025 3.5e-50 201.8 131 69.5
Solyc05g010015.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 4.5e-50 201.4 136 67.6
Medtr5g062660 Medicago truncatula HOM05D004290 ORTHO05D005025 5.9e-50 201.1 137 67.9
MD16G1050100 Malus domestica HOM05D004290 ORTHO05D005025 2.2e-49 199.1 136 66.2
SGA_v2.0_scaffold14G06802 Striga asiatica HOM05D004290 ORTHO05D005025 2.2e-49 199.1 138 67.4
TPR.G33571 Trifolium pratense HOM05D004290 ORTHO05D005025 2.2e-49 199.1 140 68.6
ClCG05G023170 Citrullus lanatus HOM05D004290 ORTHO05D005025 2.9e-49 198.7 129 64.3
Sopen05g005830 Solanum pennellii HOM05D004290 ORTHO05D005025 2.9e-49 198.7 136 66.9
Lalb_Chr04g0255051 Lupinus albus HOM05D004290 ORTHO05D005025 1.1e-48 196.8 139 66.9
DCAR_017507 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-48 196.4 138 60.9
DCAR_026708 Daucus carota HOM05D004290 ORTHO05D005025 1.5e-48 196.4 138 60.9
ECA233G1907 Erigeron canadensis HOM05D004290 ORTHO05D005025 2.5e-48 195.7 136 64.0
SGA_v2.0_scaffold14G06801 Striga asiatica HOM05D004290 ORTHO05D005025 1.6e-47 193.0 138 64.5
Pp3c20_17780 Physcomitrium patens HOM05D004290 ORTHO05D005025 2.1e-47 192.6 136 61.0
RcHm_v2.0_Chr4g0436151 Rosa chinensis HOM05D004290 ORTHO05D005025 2.1e-47 192.6 135 68.9
Peaxi162Scf00118g01310 Petunia axillaris HOM05D004290 ORTHO05D005025 4.7e-47 191.4 135 60.7
Lsat_1_v5_gn_8_37520 Lactuca sativa HOM05D004290 ORTHO05D005025 6.1e-47 191.0 129 66.7
HanXRQChr16g0528791 Helianthus annuus HOM05D004290 ORTHO05D005025 1.2e-45 186.8 137 64.2
PGSC0003DMG400030259 Solanum tuberosum HOM05D004290 ORTHO05D005025 1.5e-45 186.4 141 59.6
HPP92_021836 Vanilla planifolia HOM05D004290 ORTHO05D005025 2.0e-45 186.0 135 62.2
Prupe.1G303100 Prunus persica HOM05D004290 ORTHO05D005025 2.6e-45 185.7 137 65.7
ECA234G2024 Erigeron canadensis HOM05D004290 ORTHO05D005025 3.4e-45 185.3 136 62.5
SalBow8G3034 Salvia bowleyana HOM05D004290 ORTHO05D005025 3.4e-45 185.3 139 61.9
Solyc03g043860.2 Solanum lycopersicum HOM05D004290 ORTHO05D005025 5.7e-45 184.5 141 58.2
HanXRQChr16g0528801 Helianthus annuus HOM05D004290 ORTHO05D005025 7.5e-45 184.1 137 59.9
QL03p036408 Quercus lobata HOM05D004290 ORTHO05D005025 1.3e-44 183.3 99 81.8
CSS0026618 Camellia sinensis var. sinensis HOM05D004290 ORTHO05D005025 6.3e-44 181.0 140 60.7
Prupe.1G300800 Prunus persica HOM05D004290 ORTHO05D005025 6.3e-44 181.0 135 65.2
CDE10G0275 Ceratophyllum demersum HOM05D004290 ORTHO05D005025 3.1e-43 178.7 137 62.0
FAN22G2200 Fragaria x ananassa HOM05D004290 ORTHO05D005025 5.4e-43 177.9 205 46.3
Lsat_1_v5_gn_4_17281 Lactuca sativa HOM05D004290 ORTHO05D005025 7.0e-43 177.6 136 59.6
SalBow8G2020 Salvia bowleyana HOM05D004290 ORTHO05D005025 9.1e-43 177.2 135 61.5
AagrBONN_evm.TU.Sc2ySwM_344.2294 Anthoceros agrestis HOM05D004290 ORTHO05D005025 1.2e-42 176.8 136 56.6
unitig_744.g24286 Utricularia gibba HOM05D004290 ORTHO05D005025 1.2e-42 176.8 132 61.4
Peaxi162Scf00367g00519 Petunia axillaris HOM05D004290 ORTHO05D005025 1.7e-41 172.9 136 64.7
Oeu044394.1 Olea europaea HOM05D004290 ORTHO05D005025 2.9e-41 172.2 134 60.4
Actinidia14836 Actinidia chinensis HOM05D000436 ORTHO05D000678 1.9e-40 169.5 112 73.2
Mapoly0059s0094 Marchantia polymorpha HOM05D004290 ORTHO05D005025 3.3e-40 168.7 135 51.9
CAN.G184.70 Capsicum annuum HOM05D004290 ORTHO05D005025 3.0e-38 162.2 113 69.0
FAN09G1140 Fragaria x ananassa HOM05D005343 ORTHO05D007153 1.2e-37 160.2 97 71.1
Sopen03g007670 Solanum pennellii HOM05D004290 ORTHO05D005025 4.4e-37 158.3 141 52.5
CBR_g26184 Chara braunii HOM05D004290 ORTHO05D005025 9.8e-37 157.1 132 51.5
FAN12G1909 Fragaria x ananassa HOM05D004290 ORTHO05D005025 2.4e-35 152.5 139 56.1
FvH4_4g28280 Fragaria vesca HOM05D004290 ORTHO05D005025 7.0e-35 151.0 137 54.0
ATR1147G035 Amborella trichopoda HOM05D004290 ORTHO05D005025 2.9e-33 145.6 143 48.3
MSTRG.13496 Avicennia marina HOM05D004290 ORTHO05D005025 3.8e-33 145.2 133 51.9
Cre03.g184400 Chlamydomonas reinhardtii HOM05D004290 ORTHO05D005025 9.5e-32 140.6 134 49.3
Peaxi162Scf00367g00520 Petunia axillaris HOM05D004290 ORTHO05D005025 1.2e-29 133.7 131 54.2
PRCOL_00005217 Prasinoderma coloniale HOM05D004290 ORTHO05D005025 2.1e-23 112.8 131 45.8
Aqoxy3G02627 Aquilegia oxysepala HOM05D004290 ORTHO05D005025 1.8e-22 109.8 71 63.4
Rhsim09G0114000 Rhododendron simsii HOM05D000436 ORTHO05D000678 1.8e-22 109.8 75 68.0
Nitab4.5_0005210g0010 Nicotiana tabacum HOM05D004290 ORTHO05D005025 6.8e-22 107.8 126 45.2
Solyc03g150121.1 Solanum lycopersicum HOM05D004290 ORTHO05D005025 8.9e-22 107.5 104 52.9
MCO10G139 Micromonas commoda HOM05D004290 ORTHO05D005025 1.7e-20 103.2 131 38.9
Prupe.1G303300 Prunus persica HOM05D004290 ORTHO05D005025 8.3e-20 100.9 103 52.4
FAN02G2314 Fragaria x ananassa HOM05D004290 ORTHO05D005025 4.1e-19 98.6 87 59.8
RcHm_v2.0_Chr2g0142051 Rosa chinensis HOM05D004290 ORTHO05D005025 7.0e-19 97.8 51 74.5
Oeu018290.1 Olea europaea HOM05D004290 ORTHO05D005025 2.7e-18 95.9 50 76.0
RcHm_v2.0_Chr2g0142061 Rosa chinensis HOM05D004290 ORTHO05D005025 2.7e-18 95.9 66 74.2
vmacro10513 Vaccinium macrocarpon HOM05D004290 ORTHO05D005025 3.9e-17 92.0 90 52.2
MD13G1048800 Malus domestica HOM05D004290 ORTHO05D005025 1.6e-15 86.7 60 68.3
TAR629G2250 Trochodendron aralioides HOM05D004290 ORTHO05D005025 5.8e-13 78.2 40 72.5
Sopen03g019130 Solanum pennellii HOM05D006181 ORTHO05D008560 4.9e-12 75.1 65 58.5
BcaB03g15846 Brassica carinata HOM05D004290 ORTHO05D005025 3.9e-09 65.5 71 52.1
FvH4_6g51211 Fragaria vesca HOM05D004290 ORTHO05D005025 2.1e-07 59.7 43 67.4


User provided reference genes

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