Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G168300 Carya illinoinensis HOM05D003744 ORTHO05D004327 2.9e-235 818.1 403 100.0
Cfa008732 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.3e-184 649.0 408 81.1
Haze_11743 Corylus avellana HOM05D003744 ORTHO05D004327 7.7e-172 607.4 405 79.3
QL03p058539 Quercus lobata HOM05D003744 ORTHO05D004327 1.0e-163 580.5 420 73.6
MD15G1355200 Malus domestica HOM05D003744 ORTHO05D004327 5.5e-162 574.7 407 72.0
FvH4_4g36840 Fragaria vesca HOM05D003744 ORTHO05D004327 8.0e-161 570.9 380 75.8
arahy.Tifrunner.gnm1.ann1.DDPE54 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.3e-160 569.3 408 71.8
Phvul.008G080300 Phaseolus vulgaris HOM05D003744 ORTHO05D004327 1.2e-159 567.0 408 73.0
QL03p042814 Quercus lobata HOM05D003744 ORTHO05D004327 1.2e-159 567.0 426 71.6
Manes.01G040712 Manihot esculenta HOM05D003744 ORTHO05D004327 1.5e-159 566.6 407 72.2
RcHm_v2.0_Chr5g0044851 Rosa chinensis HOM05D003744 ORTHO05D004327 1.5e-159 566.6 404 73.5
Prupe.1G346400 Prunus persica HOM05D003744 ORTHO05D004327 2.0e-159 566.2 410 72.0
Prupe.4G276200 Prunus persica HOM05D003744 ORTHO05D004327 2.0e-159 566.2 411 70.6
arahy.Tifrunner.gnm1.ann1.G2KDP7 Arachis hypogaea HOM05D003744 ORTHO05D004327 2.6e-159 565.8 408 71.3
VMungo1383G1042 Vigna mungo HOM05D003744 ORTHO05D004327 2.6e-159 565.8 405 71.9
Gohir.A12G134500 Gossypium hirsutum HOM05D003744 ORTHO05D004327 5.7e-159 564.7 401 72.6
RcHm_v2.0_Chr4g0446591 Rosa chinensis HOM05D003744 ORTHO05D004327 5.7e-159 564.7 395 74.4
Ciclev10031746m.g Citrus clementina HOM05D003744 ORTHO05D004327 1.7e-158 563.1 405 72.3
Gorai.008G149600 Gossypium raimondii HOM05D003744 ORTHO05D004327 6.3e-158 561.2 404 70.8
Glyma.18G216400 Glycine max HOM05D003744 ORTHO05D004327 1.8e-157 559.7 403 71.7
arahy.Tifrunner.gnm1.ann1.686LQU Arachis hypogaea HOM05D003744 ORTHO05D004327 2.4e-157 559.3 408 70.6
Gohir.D12G138100 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.4e-157 559.3 404 70.8
Dinv17603 Davidia involucrata HOM05D003744 ORTHO05D004327 3.1e-157 558.9 388 73.5
Thecc.02G161400 Theobroma cacao HOM05D003744 ORTHO05D004327 2.0e-156 556.2 413 70.7
Lalb_Chr12g0205351 Lupinus albus HOM05D003744 ORTHO05D004327 1.7e-155 553.1 403 71.2
Atru.chr11.479 Acer truncatum HOM05D003744 ORTHO05D004327 2.3e-155 552.7 392 72.7
Sabra05G0077500 Salix brachista HOM05D003744 ORTHO05D004327 3.8e-155 552.0 385 71.7
Nn2g14543 Nelumbo nucifera HOM05D003744 ORTHO05D004327 6.6e-155 551.2 407 69.5
Lj1g0013770 Lotus japonicus HOM05D003744 ORTHO05D004327 1.1e-154 550.4 416 70.0
GSVIVG01012037001 Vitis vinifera HOM05D003744 ORTHO05D004327 1.5e-154 550.1 368 75.8
PGR044G0777 Punica granatum HOM05D003744 ORTHO05D004327 9.5e-154 547.4 325 83.1
CSS0044819 Camellia sinensis var. sinensis HOM05D003744 ORTHO05D004327 1.6e-153 546.6 416 70.0
COL.COLO4_10100 Corchorus olitorius HOM05D003744 ORTHO05D004327 2.8e-153 545.8 421 68.4
Aqoxy1G00571 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 6.1e-153 544.7 335 78.2
PGSC0003DMG400024499 Solanum tuberosum HOM05D003744 ORTHO05D004327 2.3e-152 542.7 392 70.7
CANSAT78G0298 Cannabis sativa HOM05D003744 ORTHO05D004327 3.0e-152 542.3 321 80.7
Ca_07785_v3 Cicer arietinum L. HOM05D003744 ORTHO05D004327 4.4e-151 538.5 330 78.2
Medtr7g073970 Medicago truncatula HOM05D003744 ORTHO05D004327 9.8e-151 537.3 409 67.2
Sc23g0003470 Simmondsia chinensis HOM05D003744 ORTHO05D004327 1.7e-150 536.6 377 71.1
MSTRG.11446 Avicennia marina HOM05D003744 ORTHO05D004327 5.4e-149 531.6 407 66.3
THA.LOC104814817 Tarenaya hassleriana HOM05D003744 ORTHO05D004327 2.0e-148 529.6 347 74.9
PSO384G3023 Papaver somniferum HOM05D003744 ORTHO05D004327 2.7e-148 529.3 408 65.7
MELO3C024026.2 Cucumis melo HOM05D003744 ORTHO05D004327 4.6e-148 528.5 329 78.7
CsaV3_3G031430 Cucumis sativus L. HOM05D003744 ORTHO05D004327 4.6e-148 528.5 351 75.5
Migut.I00018 Erythranthe guttata HOM05D003744 ORTHO05D004327 5.0e-147 525.0 408 65.9
Cc04_g13930 Coffea canephora HOM05D003744 ORTHO05D004327 6.6e-147 524.6 402 68.4
Rhsim09G0044700 Rhododendron simsii HOM05D003744 ORTHO05D004327 1.5e-146 523.5 354 74.0
RhsimUnG0157000 Rhododendron simsii HOM05D003744 ORTHO05D004327 3.3e-146 522.3 364 72.8
Duzib132G0191 Durio zibethinus HOM05D003744 ORTHO05D004327 1.2e-145 520.4 381 69.6
ECA233G3748 Erigeron canadensis HOM05D003744 ORTHO05D004327 2.1e-145 519.6 296 83.4
Sed0024199 Sechium edule HOM05D003744 ORTHO05D004327 2.1e-145 519.6 346 74.3
EL10Ac7g17368 Beta vulgaris HOM05D003744 ORTHO05D004327 6.8e-144 514.6 394 66.2
HanXRQChr11g0332851 Helianthus annuus HOM05D003744 ORTHO05D004327 1.5e-143 513.5 403 68.7
vmacro07295 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 2.2e-142 509.6 382 68.6
Prupe.1G346500 Prunus persica HOM05D003744 ORTHO05D004327 2.9e-142 509.2 367 68.4
AL7G29700 Arabidopsis lyrata HOM05D003744 ORTHO05D004327 3.7e-142 508.8 413 64.4
C01p18750 Brassica napus HOM05D003744 ORTHO05D004327 3.7e-142 508.8 411 64.7
BcaNung01074 Brassica carinata HOM05D003744 ORTHO05D004327 6.4e-142 508.1 401 65.3
A01p14960 Brassica napus HOM05D003744 ORTHO05D004327 6.4e-142 508.1 408 64.7
AT4G23660 Arabidopsis thaliana HOM05D003744 ORTHO05D004327 1.1e-141 507.3 415 63.9
Thhalv10025345m.g Eutrema salsugineum HOM05D003744 ORTHO05D004327 1.4e-141 506.9 414 64.7
BcaC09g50959 Brassica carinata HOM05D003744 ORTHO05D004327 7.0e-141 504.6 415 63.6
Os08g0322600 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 2.0e-140 503.1 312 76.9
Sp7g21590 Schrenkiella parvula HOM05D003744 ORTHO05D004327 2.0e-140 503.1 411 64.0
BraA01t01437Z Brassica rapa HOM05D003744 ORTHO05D004327 2.7e-140 502.7 423 62.9
Solyc03g114300.4 Solanum lycopersicum HOM05D003744 ORTHO05D004327 3.5e-140 502.3 377 68.7
Aa31LG6G6900 Aethionema arabicum HOM05D003744 ORTHO05D004327 4.6e-140 501.9 413 64.9
Carub.0007s1748 Capsella rubella HOM05D003744 ORTHO05D004327 1.3e-139 500.4 407 64.6
Lsat_1_v5_gn_6_17921 Lactuca sativa HOM05D003744 ORTHO05D004327 1.5e-138 496.9 409 66.3
Potri.005G093600 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.9e-138 496.5 322 72.0
BolC1t01805H Brassica oleracea HOM05D003744 ORTHO05D004327 9.5e-138 494.2 431 61.3
BcaNung03441 Brassica carinata HOM05D003744 ORTHO05D004327 4.7e-137 491.9 399 63.7
C07p52950 Brassica napus HOM05D003744 ORTHO05D004327 4.7e-137 491.9 399 63.7
BcaNung03181 Brassica carinata HOM05D003744 ORTHO05D004327 8.1e-137 491.1 399 63.4
A03p54630 Brassica napus HOM05D003744 ORTHO05D004327 1.1e-136 490.7 403 62.0
ATR1100G008 Amborella trichopoda HOM05D003744 ORTHO05D004327 8.9e-136 487.6 300 77.3
AUR62036656 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.5e-135 486.9 382 66.2
Lj8A264T57 Lonicera japonica HOM05D003744 ORTHO05D004327 2.0e-135 486.5 402 65.2
MD11G1112600 Malus domestica HOM05D003744 ORTHO05D004327 4.9e-134 481.9 334 70.4
Aa31LG9G10990 Aethionema arabicum HOM05D003744 ORTHO05D004327 2.4e-133 479.6 333 70.0
ClCG10G011930 Citrullus lanatus HOM05D003744 ORTHO05D004327 2.4e-133 479.6 401 66.1
BolC7t45794H Brassica oleracea HOM05D003744 ORTHO05D004327 4.1e-133 478.8 415 61.0
SalBow1G2569 Salvia bowleyana HOM05D003744 ORTHO05D004327 5.4e-133 478.4 358 66.5
CAN.G781.16 Capsicum annuum HOM05D003744 ORTHO05D004327 7.3e-130 468.0 258 86.4
TWI53G1336 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 6.2e-129 464.9 351 70.4
Zm00001eb190740 Zea mays HOM05D003744 ORTHO05D004327 6.8e-128 461.5 387 62.8
Thecc.02G176000 Theobroma cacao HOM05D003744 ORTHO05D004327 5.8e-127 458.4 335 66.9
BraA03t14530Z Brassica rapa HOM05D003744 ORTHO05D004327 1.4e-125 453.8 387 62.0
Duzib132G0180 Durio zibethinus HOM05D003744 ORTHO05D004327 2.1e-124 449.9 405 58.3
MD11G1112700 Malus domestica HOM05D003744 ORTHO05D004327 2.1e-124 449.9 369 62.9
Peaxi162Scf00017g02835 Petunia axillaris HOM05D003744 ORTHO05D004327 6.0e-124 448.4 386 64.0
Aqoxy5G02199 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-122 443.7 280 77.1
Aqoxy94s001 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-122 443.7 280 77.1
Aqoxy94s003 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.5e-122 443.7 280 77.1
Ah.15g093700 Amaranthus hybridus HOM05D003744 ORTHO05D004327 1.9e-122 443.4 387 58.7
Mapoly0100s0056 Marchantia polymorpha HOM05D003744 ORTHO05D004327 9.6e-122 441.0 296 68.2
DCAR_026464 Daucus carota HOM05D003744 ORTHO05D004327 1.6e-121 440.3 243 86.0
Os08g0388900 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 1.6e-121 440.3 295 69.2
DCAR_029703 Daucus carota HOM05D003744 ORTHO05D004327 2.1e-121 439.9 245 85.7
Nitab4.5_0000852g0010 Nicotiana tabacum HOM05D003744 ORTHO05D004327 2.1e-121 439.9 373 62.5
AagrBONN_evm.TU.Sc2ySwM_340.154 Anthoceros agrestis HOM05D003744 ORTHO05D004327 4.7e-121 438.7 291 68.0
SMO164G0212 Selaginella moellendorffii HOM05D003744 ORTHO05D004327 4.7e-121 438.7 295 71.5
arahy.Tifrunner.gnm1.ann1.Z9T1G4 Arachis hypogaea HOM05D003744 ORTHO05D004327 3.1e-120 436.0 408 59.6
TAR374G0876 Trochodendron aralioides HOM05D003744 ORTHO05D004327 6.9e-120 434.9 426 58.9
PSO170G1927 Papaver somniferum HOM05D003744 ORTHO05D004327 2.0e-119 433.3 328 65.2
TWI53G1840 Tripterygium wilfordii HOM05D003744 ORTHO05D004327 2.6e-119 433.0 406 59.4
arahy.Tifrunner.gnm1.ann1.KM1SID Arachis hypogaea HOM05D003744 ORTHO05D004327 3.4e-119 432.6 262 81.7
unitig_52.g17488 Utricularia gibba HOM05D003744 ORTHO05D004327 4.6e-116 422.2 295 71.2
Gorai.008G153000 Gossypium raimondii HOM05D003744 ORTHO05D004327 2.3e-115 419.9 394 55.3
Gohir.A12G137600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 1.5e-114 417.2 292 66.1
Gohir.D12G141600 Gossypium hirsutum HOM05D003744 ORTHO05D004327 2.1e-113 413.3 394 54.6
AUR62034614 Chenopodium quinoa HOM05D003744 ORTHO05D004327 1.1e-112 411.0 236 82.6
QL08p053649 Quercus lobata HOM05D003744 ORTHO05D004327 2.9e-110 402.9 216 89.8
Gohir.A12G137650 Gossypium hirsutum HOM05D003744 ORTHO05D004327 8.4e-110 401.4 292 64.7
Nitab4.5_0005862g0050 Nicotiana tabacum HOM05D003744 ORTHO05D004327 3.2e-109 399.4 421 54.4
SGA_v2.0_scaffold90G27943 Striga asiatica HOM05D003744 ORTHO05D004327 5.6e-106 388.7 343 60.3
RcHm_v2.0_Chr5g0044921 Rosa chinensis HOM05D003744 ORTHO05D004327 2.1e-105 386.7 216 87.0
Potri.005G093700 Populus trichocarpa HOM05D003744 ORTHO05D004327 1.7e-102 377.1 306 65.0
SalBow1G6149 Salvia bowleyana HOM05D003744 ORTHO05D004327 3.8e-102 375.9 367 54.0
CDE05G3331 Ceratophyllum demersum HOM05D003744 ORTHO05D004327 1.4e-101 374.0 281 66.5
BcaB03g12405 Brassica carinata HOM05D003744 ORTHO05D004327 5.5e-101 372.1 256 72.7
Sed0012155 Sechium edule HOM05D003744 ORTHO05D004327 3.9e-99 365.9 351 58.7
Cc04_g13880 Coffea canephora HOM05D003744 ORTHO05D004327 1.5e-98 364.0 284 60.6
Pp3c17_13460 Physcomitrium patens HOM05D003744 ORTHO05D004327 6.2e-97 358.6 314 56.7
Cre06.g291800 Chlamydomonas reinhardtii HOM05D003744 ORTHO05D004327 4.2e-93 345.9 312 57.1
Lj2g0000279 Lotus japonicus HOM05D003744 ORTHO05D004327 3.0e-91 339.7 216 76.9
MCO12G284 Micromonas commoda HOM05D003744 ORTHO05D004327 6.7e-91 338.6 315 54.6
CARHR231030 Cardamine hirsuta HOM05D003744 ORTHO05D004327 5.3e-88 328.9 297 60.9
Os08g0389300 Oryza sativa ssp. japonica HOM05D003744 ORTHO05D004327 3.3e-82 309.7 204 71.6
arahy.Tifrunner.gnm1.ann1.1L5CCL Arachis hypogaea HOM05D003744 ORTHO05D004327 6.3e-81 305.4 173 84.4
Eucgr.G01369 Eucalyptus grandis HOM05D003744 ORTHO05D004327 3.1e-80 303.1 328 54.3
Medtr3g111660 Medicago truncatula HOM05D003744 ORTHO05D004327 2.6e-79 300.1 349 50.7
FAN17G0528 Fragaria x ananassa HOM05D003744 ORTHO05D004327 3.4e-79 299.7 333 53.5
BcaC01g00486 Brassica carinata HOM05D003744 ORTHO05D004327 5.9e-79 298.9 321 53.0
TPR.G35100 Trifolium pratense HOM05D003744 ORTHO05D004327 1.9e-77 293.9 159 84.3
TAR374G1156 Trochodendron aralioides HOM05D003744 ORTHO05D004327 2.1e-76 290.4 195 76.4
Eucgr.H03234 Eucalyptus grandis HOM05D003744 ORTHO05D004327 2.3e-75 287.0 158 82.9
TAR374G1448 Trochodendron aralioides HOM05D003744 ORTHO05D004327 1.3e-73 281.2 281 56.6
CBR_g5669 Chara braunii HOM05D003744 ORTHO05D004327 2.8e-73 280.0 215 64.7
Cc00_g30150 Coffea canephora HOM05D003744 ORTHO05D004327 6.5e-70 268.9 174 73.0
A08p21950 Brassica napus HOM05D003744 ORTHO05D004327 9.4e-69 265.0 188 69.1
PRCOL_00006084 Prasinoderma coloniale HOM05D003744 ORTHO05D004327 3.6e-68 263.1 284 49.6
SEGI_31034 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.6e-68 263.1 154 79.2
Sopen03g033400 Solanum pennellii HOM05D003744 ORTHO05D004327 4.7e-68 262.7 245 58.8
Haze_26705 Corylus avellana HOM05D003744 ORTHO05D004327 2.8e-65 253.4 282 46.5
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 1.2e-63 248.1 239 54.0
FAN07G0518 Fragaria x ananassa HOM05D003744 ORTHO05D004327 8.5e-62 241.9 216 61.1
SEGI_29356 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 3.2e-61 240.0 380 40.5
SEGI_19125 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 2.6e-58 230.3 148 73.6
Lj1g0011441 Lotus japonicus HOM05D003744 ORTHO05D004327 4.4e-58 229.6 137 78.8
TPR.G24330 Trifolium pratense HOM05D003744 ORTHO05D004327 8.2e-57 225.3 240 55.0
Hund23867 Selenicereus undatus HOM05D003744 ORTHO05D004327 2.9e-54 216.9 147 71.4
Oeu024760.1 Olea europaea HOM05D003744 ORTHO05D004327 1.5e-53 214.5 216 53.7
HPP92_014779 Vanilla planifolia HOM05D003744 ORTHO05D004327 3.0e-51 206.8 182 56.6
C03p80510 Brassica napus HOM05D003744 ORTHO05D004327 8.8e-51 205.3 203 57.6
Cfa021958 Carpinus fangiana HOM05D003744 ORTHO05D004327 2.6e-50 203.8 276 44.2
Cc04_g15800 Coffea canephora HOM05D003744 ORTHO05D004327 4.8e-49 199.5 174 58.0
Cpa.g.sc5.31 Carica papaya HOM05D003744 ORTHO05D004327 7.0e-48 195.7 196 58.2
Gohir.A12G137450 Gossypium hirsutum HOM05D003744 ORTHO05D004327 3.3e-45 186.8 144 61.8
FAN12G4043 Fragaria x ananassa HOM05D003744 ORTHO05D004327 1.4e-43 181.4 166 59.6
QL08p053645 Quercus lobata HOM05D003744 ORTHO05D004327 1.4e-40 171.4 191 55.0
MD16G1001300 Malus domestica HOM05D003744 ORTHO05D004327 5.4e-40 169.5 402 33.1
CBR_g4211 Chara braunii HOM05D003744 ORTHO05D004327 2.5e-37 160.6 119 64.7
TAR374G0013 Trochodendron aralioides HOM05D003744 ORTHO05D004327 9.2e-32 142.1 81 80.2
Cc00_g32230 Coffea canephora HOM05D003744 ORTHO05D004327 6.8e-27 125.9 141 44.7
Lalb_Chr12g0204281 Lupinus albus HOM05D003744 ORTHO05D004327 1.5e-26 124.8 72 84.7
SEGI_11824 Sequoiadendron giganteum HOM05D003744 ORTHO05D004327 1.1e-24 118.6 70 81.4
Lalb_Chr12g0204291 Lupinus albus HOM05D003744 ORTHO05D004327 1.3e-22 111.7 157 44.6
Cc04_g13890 Coffea canephora HOM05D003744 ORTHO05D004327 2.3e-22 110.9 99 55.6
Glyma.09G272651 Glycine max HOM05D003744 ORTHO05D004327 1.9e-21 107.8 176 42.0
RcHm_v2.0_Chr5g0044931 Rosa chinensis HOM05D003744 ORTHO05D004327 2.5e-21 107.5 143 49.7
TPR.G23229 Trifolium pratense HOM05D003744 ORTHO05D004327 5.2e-19 99.8 52 82.7
Aqoxy5G00880 Aquilegia oxysepala HOM05D003744 ORTHO05D004327 1.4e-16 91.7 55 76.4
BolC3t20296H Brassica oleracea HOM05D003744 ORTHO05D004327 2.1e-15 87.8 79 53.2
Migut.H00604 Erythranthe guttata HOM05D003744 ORTHO05D004327 3.9e-14 83.6 155 38.7
Cc04_g13900 Coffea canephora HOM05D003744 ORTHO05D004327 8.6e-14 82.4 56 69.6
Cpa.g.sc5.29 Carica papaya HOM05D003744 ORTHO05D004327 1.9e-13 81.3 157 40.8
Migut.N01582 Erythranthe guttata HOM05D003744 ORTHO05D004327 4.3e-13 80.1 154 39.0
vmacro10898 Vaccinium macrocarpon HOM05D003744 ORTHO05D004327 1.2e-12 78.6 45 80.0
DCAR_026463 Daucus carota HOM05D003744 ORTHO05D004327 4.7e-12 76.6 143 41.3
RcHm_v2.0_Chr5g0044971 Rosa chinensis HOM05D003744 ORTHO05D004327 1.1e-11 75.5 42 85.7
C03p80520 Brassica napus HOM05D003744 ORTHO05D004327 7.6e-10 69.3 48 68.8
HanXRQChr06g0182231 Helianthus annuus HOM05D004241 ORTHO05D006031 8.4e-09 65.9 212 34.0
Lsat_1_v5_gn_8_101501 Lactuca sativa HOM05D004241 ORTHO05D006031 9.2e-08 62.4 201 30.8
Nn2g14220 Nelumbo nucifera HOM05D003744 ORTHO05D004327 9.2e-08 62.4 41 78.0


User provided reference genes

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