Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G160100 Carya illinoinensis HOM05D003290 ORTHO05D003866 6.3e-241 837.0 424 100.0
CiPaw.05G159900 Carya illinoinensis HOM05D003290 ORTHO05D003866 6.1e-220 767.3 417 93.8
Cfa015081 Carpinus fangiana HOM05D003290 ORTHO05D003866 1.3e-174 616.7 419 76.6
Eucgr.G02062 Eucalyptus grandis HOM05D003290 ORTHO05D003866 3.1e-171 605.5 419 73.7
Prupe.1G339200 Prunus persica HOM05D003290 ORTHO05D003866 2.0e-170 602.8 420 72.9
CANSAT78G1043 Cannabis sativa HOM05D003290 ORTHO05D003866 6.4e-169 597.8 420 71.7
Potri.010G100900 Populus trichocarpa HOM05D003290 ORTHO05D003866 1.3e-166 590.1 417 71.0
Dinv07020 Davidia involucrata HOM05D003290 ORTHO05D003866 1.6e-164 583.2 422 71.3
FvH4_4g35880 Fragaria vesca HOM05D003290 ORTHO05D003866 4.8e-164 581.6 429 68.5
FAN12G1356 Fragaria x ananassa HOM05D003290 ORTHO05D003866 4.8e-164 581.6 429 68.5
PGR142G0945 Punica granatum HOM05D003290 ORTHO05D003866 8.1e-164 580.9 425 70.8
FAN22G1284 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.4e-163 579.3 429 68.8
RcHm_v2.0_Chr4g0445491 Rosa chinensis HOM05D003290 ORTHO05D003866 3.1e-163 578.9 433 68.8
Atru.chr11.983 Acer truncatum HOM05D003290 ORTHO05D003866 5.8e-162 574.7 421 69.6
Potri.008G140700 Populus trichocarpa HOM05D003290 ORTHO05D003866 5.8e-162 574.7 418 69.6
Actinidia12429 Actinidia chinensis HOM05D003290 ORTHO05D003866 6.4e-161 571.2 421 70.8
GSVIVG01011573001 Vitis vinifera HOM05D003290 ORTHO05D003866 8.4e-161 570.9 419 71.4
TAR629G0420 Trochodendron aralioides HOM05D003290 ORTHO05D003866 2.4e-160 569.3 422 69.4
Thecc.02G301400 Theobroma cacao HOM05D003290 ORTHO05D003866 2.7e-159 565.8 428 69.6
Nn4g24593 Nelumbo nucifera HOM05D003290 ORTHO05D003866 6.7e-158 561.2 419 67.1
Hma1.2p1_0197F.1_g085170 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 3.3e-157 558.9 420 68.6
Sabra08G0106800 Salix brachista HOM05D003290 ORTHO05D003866 3.3e-157 558.9 414 68.6
CsaV3_5G017250 Cucumis sativus L. HOM05D003290 ORTHO05D003866 5.6e-157 558.1 422 67.1
Lalb_Chr13g0293001 Lupinus albus HOM05D003290 ORTHO05D003866 7.4e-157 557.8 419 68.0
COL.COLO4_27555 Corchorus olitorius HOM05D003290 ORTHO05D003866 2.4e-155 552.7 431 67.7
TWI74G0523 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 4.0e-155 552.0 420 67.4
MELO3C005228.2 Cucumis melo HOM05D003290 ORTHO05D003866 5.3e-155 551.6 422 67.1
Rhsim09G0082800 Rhododendron simsii HOM05D003290 ORTHO05D003866 4.9e-153 545.0 494 59.5
vmacro10756 Vaccinium macrocarpon HOM05D003290 ORTHO05D003866 4.9e-153 545.0 439 66.1
Manes.15G139900 Manihot esculenta HOM05D003290 ORTHO05D003866 1.1e-152 543.9 432 66.2
Lj4g0019755 Lotus japonicus HOM05D003290 ORTHO05D003866 1.4e-152 543.5 419 65.2
Gohir.D02G138100 Gossypium hirsutum HOM05D003290 ORTHO05D003866 1.9e-152 543.1 428 67.8
Sed0007344 Sechium edule HOM05D003290 ORTHO05D003866 1.9e-152 543.1 418 65.1
Gorai.005G154600 Gossypium raimondii HOM05D003290 ORTHO05D003866 2.5e-152 542.7 428 67.5
Gohir.A03G113800 Gossypium hirsutum HOM05D003290 ORTHO05D003866 9.3e-152 540.8 428 67.3
Duzib268G0109 Durio zibethinus HOM05D003290 ORTHO05D003866 1.6e-151 540.0 429 66.2
THA.LOC104805106 Tarenaya hassleriana HOM05D003290 ORTHO05D003866 6.0e-151 538.1 424 65.8
Cc11_g05260 Coffea canephora HOM05D003290 ORTHO05D003866 1.8e-150 536.6 421 65.6
TPR.G11847 Trifolium pratense HOM05D003290 ORTHO05D003866 2.3e-150 536.2 421 65.6
arahy.Tifrunner.gnm1.ann1.4ZG746 Arachis hypogaea HOM05D003290 ORTHO05D003866 3.0e-150 535.8 424 65.1
arahy.Tifrunner.gnm1.ann1.GST19D Arachis hypogaea HOM05D003290 ORTHO05D003866 3.0e-150 535.8 424 65.1
arahy.Tifrunner.gnm1.ann1.P8F85A Arachis hypogaea HOM05D003290 ORTHO05D003866 5.1e-150 535.0 424 64.9
Phvul.002G185150 Phaseolus vulgaris HOM05D003290 ORTHO05D003866 1.9e-149 533.1 421 65.3
Psat7g085560 Pisum sativum HOM05D003290 ORTHO05D003866 1.6e-148 530.0 419 65.2
FAN07G0883 Fragaria x ananassa HOM05D003290 ORTHO05D003866 2.2e-148 529.6 432 64.1
DCAR_030317 Daucus carota HOM05D003290 ORTHO05D003866 2.8e-148 529.3 429 64.3
Peaxi162Scf00349g00111 Petunia axillaris HOM05D003290 ORTHO05D003866 2.8e-148 529.3 419 65.4
Glyma.08G092000 Glycine max HOM05D003290 ORTHO05D003866 3.7e-148 528.9 422 65.4
Ca_18198_v3 Cicer arietinum L. HOM05D003290 ORTHO05D003866 6.3e-148 528.1 419 65.4
MBI13_g17879_MAGBIO Magnolia biondii HOM05D003290 ORTHO05D003866 6.3e-148 528.1 426 63.8
VMungo0251G2069 Vigna mungo HOM05D003290 ORTHO05D003866 8.2e-148 527.7 421 64.1
Nitab4.5_0001529g0040 Nicotiana tabacum HOM05D003290 ORTHO05D003866 3.1e-147 525.8 420 64.5
ClCG01G006860 Citrullus lanatus HOM05D003290 ORTHO05D003866 9.0e-147 524.2 489 58.1
TWI56G1413 Tripterygium wilfordii HOM05D003290 ORTHO05D003866 4.5e-146 521.9 418 64.4
Sc03g0005960 Simmondsia chinensis HOM05D003290 ORTHO05D003866 2.2e-145 519.6 419 64.2
Nitab4.5_0007122g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.4e-144 516.9 423 63.4
Migut.E00570 Erythranthe guttata HOM05D003290 ORTHO05D003866 1.8e-142 510.0 421 63.7
Sopen01g001090 Solanum pennellii HOM05D003290 ORTHO05D003866 3.0e-142 509.2 420 62.4
Solyc01g005020.3 Solanum lycopersicum HOM05D003290 ORTHO05D003866 5.1e-142 508.4 420 62.4
ECA234G2339 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.1e-141 507.3 419 63.5
EL10Ac6g15381 Beta vulgaris HOM05D003290 ORTHO05D003866 1.7e-140 503.4 420 61.7
PGSC0003DMG400022786 Solanum tuberosum HOM05D003290 ORTHO05D003866 2.2e-140 503.1 420 61.9
CSS0011262 Camellia sinensis var. sinensis HOM05D003290 ORTHO05D003866 2.8e-140 502.7 420 64.5
Haze_10795 Corylus avellana HOM05D003290 ORTHO05D003866 3.7e-140 502.3 317 79.8
Ah.03g147350 Amaranthus hybridus HOM05D003290 ORTHO05D003866 4.8e-140 501.9 445 58.9
ATR0598G076 Amborella trichopoda HOM05D003290 ORTHO05D003866 6.3e-140 501.5 420 61.9
AUR62003491 Chenopodium quinoa HOM05D003290 ORTHO05D003866 6.3e-140 501.5 420 61.4
Lj6C728G5 Lonicera japonica HOM05D003290 ORTHO05D003866 1.8e-139 500.0 422 63.3
AUR62017800 Chenopodium quinoa HOM05D003290 ORTHO05D003866 3.4e-138 495.7 419 61.8
SGA_v2.0_scaffold348G49593 Striga asiatica HOM05D003290 ORTHO05D003866 1.0e-137 494.2 420 61.9
CAN.G282.94 Capsicum annuum HOM05D003290 ORTHO05D003866 1.3e-137 493.8 420 60.7
PSO017G1263 Papaver somniferum HOM05D003290 ORTHO05D003866 3.8e-137 492.3 423 60.5
Manes.17G091100 Manihot esculenta HOM05D003290 ORTHO05D003866 1.9e-136 490.0 432 60.0
CDE06G1581 Ceratophyllum demersum HOM05D003290 ORTHO05D003866 1.6e-135 486.9 421 60.8
BcaB07g30722 Brassica carinata HOM05D003290 ORTHO05D003866 6.1e-135 485.0 426 60.8
MSTRG.2101 Avicennia marina HOM05D003290 ORTHO05D003866 7.9e-135 484.6 421 61.0
HanXRQChr15g0469331 Helianthus annuus HOM05D003290 ORTHO05D003866 7.9e-135 484.6 420 60.5
Aa31LG2G7940 Aethionema arabicum HOM05D003290 ORTHO05D003866 1.8e-134 483.4 424 58.7
Carub.0005s0099 Capsella rubella HOM05D003290 ORTHO05D003866 5.1e-134 481.9 425 60.0
AT2G01980 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 6.7e-134 481.5 425 60.9
BolC9t55917H Brassica oleracea HOM05D003290 ORTHO05D003866 1.5e-133 480.3 426 60.3
Lsat_1_v5_gn_5_35481 Lactuca sativa HOM05D003290 ORTHO05D003866 2.0e-133 479.9 427 61.4
A09p23700 Brassica napus HOM05D003290 ORTHO05D003866 5.7e-133 478.4 426 60.3
C09p30540 Brassica napus HOM05D003290 ORTHO05D003866 5.7e-133 478.4 426 60.1
BcaC04g21541 Brassica carinata HOM05D003290 ORTHO05D003866 7.4e-133 478.0 426 60.1
Lj4g0008630 Lotus japonicus HOM05D003290 ORTHO05D003866 9.7e-133 477.6 415 59.3
BraA09t37969Z Brassica rapa HOM05D003290 ORTHO05D003866 1.3e-132 477.2 426 60.3
AL5G11170 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 1.7e-132 476.9 426 60.3
Thhalv10003547m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 2.2e-132 476.5 425 60.2
QL03p039662 Quercus lobata HOM05D003290 ORTHO05D003866 1.8e-131 473.4 817 39.5
Aqoxy4G00109 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 1.5e-130 470.3 418 59.3
Sp2g13410 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.5e-130 470.3 426 59.2
Cpa.g.sc2.68 Carica papaya HOM05D003290 ORTHO05D003866 2.2e-129 466.5 318 72.6
DCAR_030318 Daucus carota HOM05D003290 ORTHO05D003866 2.9e-129 466.1 420 57.4
HPP92_016411 Vanilla planifolia HOM05D003290 ORTHO05D003866 8.8e-126 454.5 419 58.0
unitig_699.g19544 Utricularia gibba HOM05D003290 ORTHO05D003866 4.8e-124 448.7 414 59.2
CARHR144580 Cardamine hirsuta HOM05D003290 ORTHO05D003866 2.4e-123 446.4 425 56.9
PSO170G6380 Papaver somniferum HOM05D003290 ORTHO05D003866 3.1e-123 446.0 393 58.3
PSO170G2638 Papaver somniferum HOM05D003290 ORTHO05D003866 1.6e-122 443.7 397 57.9
CAN.G282.93 Capsicum annuum HOM05D003290 ORTHO05D003866 2.6e-122 443.0 388 59.8
Ciclev10015265m.g Citrus clementina HOM05D003290 ORTHO05D003866 1.7e-121 440.3 345 65.8
PSO339G1388 Papaver somniferum HOM05D003290 ORTHO05D003866 2.2e-121 439.9 398 56.3
PSO729G0139 Papaver somniferum HOM05D003290 ORTHO05D003866 1.1e-120 437.6 397 56.9
Zm00001eb033240 Zea mays HOM05D003290 ORTHO05D003866 6.7e-118 428.3 417 54.9
Os12g0641100 Oryza sativa ssp. japonica HOM05D003290 ORTHO05D003866 1.3e-116 424.1 420 55.0
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 6.5e-113 411.8 341 63.0
ECA246G3356 Erigeron canadensis HOM05D003290 ORTHO05D003866 1.9e-96 357.1 384 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1085 Anthoceros agrestis HOM05D003290 ORTHO05D003866 2.3e-94 350.1 425 45.2
HanXRQChr12g0381631 Helianthus annuus HOM05D003290 ORTHO05D003866 9.2e-91 338.2 342 52.6
Mapoly0206s0002 Marchantia polymorpha HOM05D003290 ORTHO05D003866 7.8e-90 335.1 421 45.6
unitig_27.g25301 Utricularia gibba HOM05D003290 ORTHO05D003866 2.8e-87 326.6 422 46.2
Pp3c16_14280 Physcomitrium patens HOM05D003290 ORTHO05D003866 4.7e-87 325.9 423 44.0
Pp3c22_9570 Physcomitrium patens HOM05D003290 ORTHO05D003866 1.5e-85 320.9 432 41.7
SMO367G0872 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 3.7e-84 316.2 306 51.0
Mapoly0062s0025 Marchantia polymorpha HOM05D003290 ORTHO05D003866 6.4e-84 315.5 425 42.6
Eucgr.B02635 Eucalyptus grandis HOM05D003290 ORTHO05D003866 6.6e-81 305.4 348 45.4
SMO367G0300 Selaginella moellendorffii HOM05D003290 ORTHO05D003866 4.7e-79 299.3 363 44.1
AagrBONN_evm.TU.Sc2ySwM_344.5331 Anthoceros agrestis HOM05D003290 ORTHO05D003866 1.5e-77 294.3 342 46.2
Hma1.2p1_0068F.1_g037320 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 5.4e-75 285.8 217 65.9
SEGI_17003 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 1.0e-73 281.6 225 61.3
PGR102G1943 Punica granatum HOM05D003290 ORTHO05D003866 5.2e-70 269.2 342 45.0
CAN.G1237.29 Capsicum annuum HOM05D003290 ORTHO05D003866 4.4e-69 266.2 348 42.0
Peaxi162Scf00130g01216 Petunia axillaris HOM05D003290 ORTHO05D003866 3.8e-68 263.1 350 41.1
MD16G1011300 Malus domestica HOM05D003290 ORTHO05D003866 1.1e-67 261.5 198 66.7
Nitab4.5_0009873g0010 Nicotiana tabacum HOM05D003290 ORTHO05D003866 6.6e-65 252.3 332 42.5
Solyc04g018100.4 Solanum lycopersicum HOM05D003290 ORTHO05D003866 1.2e-63 248.1 348 39.4
Aa31LG2G2650 Aethionema arabicum HOM05D003290 ORTHO05D003866 2.2e-60 237.3 186 61.8
MD13G1014100 Malus domestica HOM05D003290 ORTHO05D003866 1.3e-52 211.5 178 63.5
Aqoxy3G04046 Aquilegia oxysepala HOM05D003290 ORTHO05D003866 7.1e-51 205.7 192 59.9
Nitab4.5_0005031g0060 Nicotiana tabacum HOM05D003290 ORTHO05D003866 1.0e-49 201.8 253 42.7
Thhalv10006906m.g Eutrema salsugineum HOM05D003290 ORTHO05D003866 1.3e-36 158.3 117 66.7
BcaC05g25381 Brassica carinata HOM05D003290 ORTHO05D003866 2.2e-36 157.5 118 66.9
CARHR015150 Cardamine hirsuta HOM05D003290 ORTHO05D003866 1.9e-35 154.5 120 64.2
BcaC05g25383 Brassica carinata HOM05D003290 ORTHO05D003866 2.5e-35 154.1 118 64.4
BolC5t30005H Brassica oleracea HOM05D003290 ORTHO05D003866 2.5e-35 154.1 118 64.4
Sp1g13020 Schrenkiella parvula HOM05D003290 ORTHO05D003866 1.2e-34 151.8 114 64.9
C05p12620 Brassica napus HOM05D003290 ORTHO05D003866 1.6e-34 151.4 118 63.6
MD16G1011400 Malus domestica HOM05D003290 ORTHO05D003866 2.1e-34 151.0 108 69.4
AT1G14660 Arabidopsis thaliana HOM05D003290 ORTHO05D003866 2.7e-34 150.6 114 65.8
Sp1g13040 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.7e-34 150.6 117 63.2
A06p10710 Brassica napus HOM05D003290 ORTHO05D003866 4.6e-34 149.8 118 62.7
BraA06t24252Z Brassica rapa HOM05D003290 ORTHO05D003866 4.6e-34 149.8 118 62.7
AL1G26630 Arabidopsis lyrata HOM05D003290 ORTHO05D003866 3.9e-33 146.7 114 64.0
Carub.0001s1442 Capsella rubella HOM05D003290 ORTHO05D003866 1.5e-32 144.8 114 62.3
Sp1g13030 Schrenkiella parvula HOM05D003290 ORTHO05D003866 2.2e-31 141.0 129 57.4
Lsat_1_v5_gn_6_55260 Lactuca sativa HOM05D003290 ORTHO05D003866 5.9e-29 132.9 123 55.3
BcaB02g06535 Brassica carinata HOM05D003290 ORTHO05D003866 3.8e-28 130.2 118 59.3
Haze_10794 Corylus avellana HOM05D003290 ORTHO05D003866 1.6e-26 124.8 104 69.2
SEGI_28338 Sequoiadendron giganteum HOM05D003290 ORTHO05D003866 7.9e-26 122.5 192 39.1
arahy.Tifrunner.gnm1.ann1.DQT168 Arachis hypogaea HOM05D003290 ORTHO05D003866 9.7e-24 115.5 125 51.2
Potri.007G100500 Populus trichocarpa HOM05D003290 ORTHO05D003866 4.1e-22 110.2 101 61.4
Cpa.g.sc2.70 Carica papaya HOM05D003290 ORTHO05D003866 1.5e-21 108.2 102 58.8
Sopen04g009310 Solanum pennellii HOM05D003290 ORTHO05D003866 2.1e-18 97.8 104 48.1
HanXRQChr13g0400621 Helianthus annuus HOM05D003290 ORTHO05D003866 3.5e-13 80.5 110 45.5
Sopen00g005880 Solanum pennellii HOM05D003290 ORTHO05D003866 1.0e-12 79.0 125 37.6
Sopen04g009320 Solanum pennellii HOM05D000004 ORTHO05D000002 1.0e-12 79.0 138 34.8
Dinv02702 Davidia involucrata HOM05D003290 ORTHO05D003866 5.2e-09 66.6 44 72.7
Hma1.2p1_0068F.1_g037310 Hydrangea macrophylla HOM05D003290 ORTHO05D003866 3.3e-08 63.9 62 54.8
CAN.G282.92 Capsicum annuum HOM05D003290 ORTHO05D003866 9.7e-08 62.4 80 45.0
Ah.03g147340 Amaranthus hybridus HOM05D003290 ORTHO05D003866 1.3e-07 62.0 145 33.8


User provided reference genes

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