Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G149300 Carya illinoinensis HOM05D005184 ORTHO05D006222 1.5e-95 352.8 180 100.0
Cfa009129 Carpinus fangiana HOM05D005184 ORTHO05D006222 1.1e-82 310.1 180 86.7
Manes.01G197300 Manihot esculenta HOM05D005184 ORTHO05D006222 8.1e-81 303.9 180 82.8
CsaV3_5G031800 Cucumis sativus L. HOM05D005184 ORTHO05D006222 2.2e-78 295.8 180 83.3
COL.COLO4_19542 Corchorus olitorius HOM05D005184 ORTHO05D006222 4.9e-78 294.7 173 85.0
HanXRQChr04g0103681 Helianthus annuus HOM05D005184 ORTHO05D006222 4.9e-78 294.7 182 80.8
Thecc.02G243600 Theobroma cacao HOM05D005184 ORTHO05D006222 8.4e-78 293.9 173 85.0
Atru.chr11.1971 Acer truncatum HOM05D005184 ORTHO05D006222 1.1e-77 293.5 180 80.6
FvH4_4g34930 Fragaria vesca HOM05D005184 ORTHO05D006222 2.5e-77 292.4 182 80.2
Lsat_1_v5_gn_4_6340 Lactuca sativa HOM05D005184 ORTHO05D006222 3.2e-77 292.0 182 80.2
Cpa.g.sc5.359 Carica papaya HOM05D005184 ORTHO05D006222 5.5e-77 291.2 176 83.0
Nn4g22873 Nelumbo nucifera HOM05D005184 ORTHO05D006222 5.5e-77 291.2 171 83.6
Ciclev10032867m.g Citrus clementina HOM05D005184 ORTHO05D006222 2.7e-76 288.9 174 82.2
Gohir.D01G129700 Gossypium hirsutum HOM05D005184 ORTHO05D006222 2.7e-76 288.9 173 83.2
CANSAT01G1514 Cannabis sativa HOM05D005184 ORTHO05D006222 3.5e-76 288.5 180 81.1
Duzib268G0446 Durio zibethinus HOM05D005184 ORTHO05D006222 3.5e-76 288.5 180 81.7
Potri.008G146200 Populus trichocarpa HOM05D005184 ORTHO05D006222 3.5e-76 288.5 177 80.2
PGR119G0379 Punica granatum HOM05D005184 ORTHO05D006222 6.0e-76 287.7 177 79.1
Gohir.A01G139200 Gossypium hirsutum HOM05D005184 ORTHO05D006222 1.0e-75 287.0 173 82.7
Ca_22770_v3 Cicer arietinum L. HOM05D005184 ORTHO05D006222 3.9e-75 285.0 178 81.5
MD13G1087800 Malus domestica HOM05D005184 ORTHO05D006222 3.9e-75 285.0 190 76.8
Phvul.003G054400 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 3.9e-75 285.0 174 82.8
Potri.010G095601 Populus trichocarpa HOM05D005184 ORTHO05D006222 6.7e-75 284.3 176 80.1
VMungo0251G1371 Vigna mungo HOM05D005184 ORTHO05D006222 1.5e-74 283.1 173 82.7
TWI18G1303 Tripterygium wilfordii HOM05D005184 ORTHO05D006222 3.3e-74 282.0 180 77.8
TAR374G1061 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.3e-74 282.0 177 78.5
Actinidia27771 Actinidia chinensis HOM05D005184 ORTHO05D006222 4.3e-74 281.6 175 81.7
MELO3C012019.2 Cucumis melo HOM05D005184 ORTHO05D006222 4.3e-74 281.6 161 87.6
Cc11_g14330 Coffea canephora HOM05D005184 ORTHO05D006222 5.7e-74 281.2 189 76.2
Sabra10G0068200 Salix brachista HOM05D005184 ORTHO05D006222 1.3e-73 280.0 183 77.6
MD16G1088100 Malus domestica HOM05D005184 ORTHO05D006222 1.6e-73 279.6 180 79.4
MSTRG.614 Avicennia marina HOM05D005184 ORTHO05D006222 3.7e-73 278.5 182 78.6
Medtr8g063230 Medicago truncatula HOM05D005184 ORTHO05D006222 4.8e-73 278.1 173 79.8
Migut.E00145 Erythranthe guttata HOM05D005184 ORTHO05D006222 8.2e-73 277.3 180 75.6
Lj4g0016473 Lotus japonicus HOM05D005184 ORTHO05D006222 1.1e-72 276.9 178 77.5
Glyma.08G290400 Glycine max HOM05D005184 ORTHO05D006222 1.4e-72 276.6 174 79.9
arahy.Tifrunner.gnm1.ann1.GIV1JF Arachis hypogaea HOM05D005184 ORTHO05D006222 1.8e-72 276.2 180 79.4
PSO478G1620 Papaver somniferum HOM05D005184 ORTHO05D006222 2.4e-72 275.8 176 77.3
Glyma.18G133800 Glycine max HOM05D005184 ORTHO05D006222 4.1e-72 275.0 173 79.8
Lalb_Chr11g0071121 Lupinus albus HOM05D005184 ORTHO05D006222 5.3e-72 274.6 179 77.7
RcHm_v2.0_Chr5g0030111 Rosa chinensis HOM05D005184 ORTHO05D006222 6.9e-72 274.2 171 80.7
PSO017G3562 Papaver somniferum HOM05D005184 ORTHO05D006222 4.5e-71 271.6 176 76.1
Gorai.002G161300 Gossypium raimondii HOM05D005184 ORTHO05D006222 5.9e-71 271.2 208 69.2
Oeu039485.1 Olea europaea HOM05D005184 ORTHO05D006222 1.7e-70 269.6 174 77.6
Oeu040755.2 Olea europaea HOM05D005184 ORTHO05D006222 1.7e-70 269.6 177 76.3
Haze_12160 Corylus avellana HOM05D005184 ORTHO05D006222 2.9e-70 268.9 180 77.8
ClCG05G025100 Citrullus lanatus HOM05D005184 ORTHO05D006222 3.8e-70 268.5 164 82.3
Aqoxy3G03072 Aquilegia oxysepala HOM05D005184 ORTHO05D006222 6.5e-70 267.7 170 76.5
TPR.G32980 Trifolium pratense HOM05D005184 ORTHO05D006222 8.5e-70 267.3 170 78.8
Rhsim12G0048500 Rhododendron simsii HOM05D005184 ORTHO05D006222 1.4e-69 266.5 190 74.7
ECA234G0428 Erigeron canadensis HOM05D005184 ORTHO05D003386 1.9e-69 266.2 172 76.7
Eucgr.B02549 Eucalyptus grandis HOM05D005184 ORTHO05D006222 6.1e-68 261.2 169 75.1
FAN17G0007 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-67 260.4 182 74.7
FAN22G1244 Fragaria x ananassa HOM05D005184 ORTHO05D006222 1.0e-67 260.4 182 74.7
Sc04g0008930 Simmondsia chinensis HOM05D005184 ORTHO05D006222 1.8e-67 259.6 175 75.4
FAN12G2936 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.0e-67 258.8 182 73.6
FAN07G0314 Fragaria x ananassa HOM05D005184 ORTHO05D006222 3.9e-67 258.5 182 73.6
Mapoly0065s0085 Marchantia polymorpha HOM05D005184 ORTHO05D006222 9.7e-66 253.8 176 69.3
CSS0049337 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-65 252.7 170 74.7
Psat4g125480 Pisum sativum HOM05D005184 ORTHO05D006222 3.7e-65 251.9 171 77.2
arahy.Tifrunner.gnm1.ann1.G4BVC6 Arachis hypogaea HOM05D005184 ORTHO05D006222 4.8e-65 251.5 239 60.3
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 1.8e-64 249.6 190 68.4
Medtr8g461280 Medicago truncatula HOM05D005184 ORTHO05D006222 3.4e-63 245.4 170 72.4
Zm00001eb194690 Zea mays HOM05D005184 ORTHO05D006222 7.7e-63 244.2 175 68.6
Os02g0741900 Oryza sativa ssp. japonica HOM05D005184 ORTHO05D006222 1.7e-62 243.0 175 69.1
Zm00001eb254250 Zea mays HOM05D005184 ORTHO05D006222 1.7e-62 243.0 175 68.0
CSS0033197 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-62 242.7 175 70.9
CSS0034024 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 6.5e-62 241.1 169 72.2
TAR622G1169 Trochodendron aralioides HOM05D005184 ORTHO05D006222 3.2e-61 238.8 162 75.3
GSVIVG01020163001 Vitis vinifera HOM05D005184 ORTHO05D006222 6.1e-60 234.6 138 86.2
CSS0002866 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 1.0e-59 233.8 163 71.8
unitig_749.g13268 Utricularia gibba HOM05D005184 ORTHO05D006222 5.1e-59 231.5 194 62.4
CSS0009826 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 5.7e-58 228.0 161 72.0
DCAR_007099 Daucus carota HOM05D005184 ORTHO05D006222 9.7e-58 227.3 188 66.0
CDE06G1803 Ceratophyllum demersum HOM05D005184 ORTHO05D006222 3.7e-57 225.3 171 69.0
AUR62005318 Chenopodium quinoa HOM05D005184 ORTHO05D006222 4.1e-56 221.9 140 79.3
RcHm_v2.0_Chr1g0347741 Rosa chinensis HOM05D005184 ORTHO05D006222 1.2e-55 220.3 149 75.8
SGA_v2.0_scaffold166G38348 Striga asiatica HOM05D005184 ORTHO05D006222 1.5e-55 219.9 145 77.9
Lj3A1049G57 Lonicera japonica HOM05D005184 ORTHO05D006222 2.6e-55 219.2 133 84.2
RcHm_v2.0_Chr3g0467191 Rosa chinensis HOM05D005184 ORTHO05D006222 2.6e-55 219.2 166 68.1
HPP92_015265 Vanilla planifolia HOM05D000076 ORTHO05D002949 4.5e-55 218.4 173 66.5
Pp3c1_7410 Physcomitrium patens HOM05D005184 ORTHO05D006222 3.2e-53 212.2 168 62.5
CBR_g30806 Chara braunii HOM05D005184 ORTHO05D006222 5.5e-53 211.5 173 59.0
CBR_g30798 Chara braunii HOM05D005184 ORTHO05D006222 9.4e-53 210.7 173 59.0
ATR1149G050 Amborella trichopoda HOM05D005184 ORTHO05D006222 3.0e-51 205.7 135 76.3
RcHm_v2.0_Chr2g0143691 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-50 203.8 149 71.1
Nitab4.5_0000031g0060 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.3e-49 200.3 235 51.9
THA.LOC104822060 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 4.8e-49 198.4 172 58.1
RcHm_v2.0_Chr4g0444381 Rosa chinensis HOM05D005184 ORTHO05D006222 1.1e-48 197.2 113 86.7
AagrBONN_evm.TU.Sc2ySwM_344.3206 Anthoceros agrestis HOM05D005184 ORTHO05D006222 1.8e-48 196.4 160 57.5
Hund05960 Selenicereus undatus HOM05D005184 ORTHO05D006222 3.1e-48 195.7 121 80.2
Carub.0001s2347 Capsella rubella HOM05D005184 ORTHO05D006222 9.1e-48 194.1 174 58.0
THA.LOC104808902 Tarenaya hassleriana HOM05D005184 ORTHO05D006222 1.6e-47 193.4 171 56.7
Aa31LG7G7840 Aethionema arabicum HOM05D005184 ORTHO05D006222 3.5e-47 192.2 171 59.1
RcHm_v2.0_Chr7g0224821 Rosa chinensis HOM05D005184 ORTHO05D006222 4.5e-47 191.8 126 77.0
SMO117G0191 Selaginella moellendorffii HOM05D005184 ORTHO05D006222 7.7e-47 191.0 175 57.7
AL1G37810 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 1.7e-46 189.9 171 58.5
Sp1g21380 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.8e-46 188.7 171 57.9
AT1G24050 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 1.1e-45 187.2 171 57.9
BcaC05g26302 Brassica carinata HOM05D005184 ORTHO05D006222 2.5e-45 186.0 174 57.5
Sed0020204 Sechium edule HOM05D005184 ORTHO05D006222 7.2e-45 184.5 124 75.8
Thhalv10009785m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 1.6e-44 183.3 171 59.1
BolC5t31020H Brassica oleracea HOM05D005184 ORTHO05D006222 6.1e-44 181.4 175 57.1
Phvul.003G054101 Phaseolus vulgaris HOM05D005184 ORTHO05D006222 4.0e-43 178.7 118 76.3
BcaB07g32379 Brassica carinata HOM05D005184 ORTHO05D006222 6.7e-43 177.9 171 57.3
BraA09t39575Z Brassica rapa HOM05D005184 ORTHO05D006222 6.7e-43 177.9 175 56.6
BraA07t29118Z Brassica rapa HOM05D005184 ORTHO05D006222 5.7e-42 174.9 176 53.4
Duzib248G0500 Durio zibethinus HOM05D005184 ORTHO05D006222 1.3e-41 173.7 134 68.7
C07p20080 Brassica napus HOM05D005184 ORTHO05D006222 1.7e-41 173.3 176 52.3
BolC7t42528H Brassica oleracea HOM05D005184 ORTHO05D006222 1.7e-41 173.3 176 52.3
C05p23190 Brassica napus HOM05D001690 ORTHO05D009096 3.1e-40 169.1 164 56.7
A09p40800 Brassica napus HOM05D001690 ORTHO05D009096 5.3e-40 168.3 164 56.7
Pp3c7_23840 Physcomitrium patens HOM05D005184 ORTHO05D006222 7.7e-39 164.5 138 61.6
Prupe.1G258500 Prunus persica HOM05D005184 ORTHO05D006222 7.7e-39 164.5 123 69.1
EL10Ac6g13619 Beta vulgaris HOM05D005184 ORTHO05D006222 6.1e-36 154.8 166 54.8
Sp5g25350 Schrenkiella parvula HOM05D005184 ORTHO05D006222 3.4e-34 149.1 180 43.9
AL2G29520 Arabidopsis lyrata HOM05D005184 ORTHO05D006222 4.4e-34 148.7 174 46.6
BcaB03g14122 Brassica carinata HOM05D005184 ORTHO05D006222 4.4e-34 148.7 121 63.6
Carub.0002s1692 Capsella rubella HOM05D005184 ORTHO05D006222 1.3e-33 147.1 174 46.6
CSS0000441 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 2.2e-33 146.4 116 64.7
Cc02_g24860 Coffea canephora HOM05D005184 ORTHO05D006222 3.7e-33 145.6 118 64.4
CARHR024350 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.4e-32 143.7 136 55.9
Thhalv10019170m.g Eutrema salsugineum HOM05D005184 ORTHO05D006222 5.4e-32 141.7 186 44.6
BraA02t06699Z Brassica rapa HOM05D005184 ORTHO05D006222 7.0e-32 141.4 173 43.9
A02p16400 Brassica napus HOM05D005184 ORTHO05D006222 2.7e-31 139.4 191 41.4
BcaC03g15168 Brassica carinata HOM05D005184 ORTHO05D006222 1.3e-30 137.1 174 44.3
C02p27410 Brassica napus HOM05D005184 ORTHO05D006222 2.9e-30 136.0 174 44.3
BolC2t08801H Brassica oleracea HOM05D005184 ORTHO05D006222 3.8e-30 135.6 174 44.3
CARHR063340 Cardamine hirsuta HOM05D005184 ORTHO05D006222 1.5e-29 133.7 175 43.4
AT1G70220 Arabidopsis thaliana HOM05D005184 ORTHO05D006222 4.2e-29 132.1 175 41.7
BcaC06g35075 Brassica carinata HOM05D005184 ORTHO05D006222 9.5e-29 131.0 176 44.9
vmacro22616 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 6.8e-27 124.8 83 77.1
Cc00_g31660 Coffea canephora HOM05D005184 ORTHO05D006222 3.5e-23 112.5 131 49.6
Cre10.g421850 Chlamydomonas reinhardtii HOM05D005184 ORTHO05D006222 2.3e-22 109.8 178 33.1
BcaB05g24540 Brassica carinata HOM05D005184 ORTHO05D006222 7.3e-21 104.8 129 46.5
Prupe.1G258600 Prunus persica HOM05D005184 ORTHO05D006222 7.3e-21 104.8 57 91.2
QL03p062286 Quercus lobata HOM05D005184 ORTHO05D006222 1.2e-20 104.0 63 81.0
Solyc04g025670.4 Solanum lycopersicum HOM05D005184 ORTHO05D006222 4.7e-20 102.1 57 89.5
vmacro22617 Vaccinium macrocarpon HOM05D005184 ORTHO05D006222 4.7e-20 102.1 57 89.5
A07p13470 Brassica napus HOM05D005184 ORTHO05D006222 1.0e-19 100.9 165 37.6
Nitab4.5_0000925g0110 Nicotiana tabacum HOM05D005184 ORTHO05D006222 1.0e-19 100.9 57 89.5
MCO16G256 Micromonas commoda HOM05D005184 ORTHO05D006222 2.6e-18 96.3 168 35.7
CSS0046251 Camellia sinensis var. sinensis HOM05D005184 ORTHO05D006222 4.4e-18 95.5 57 82.5
Cc00_g05590 Coffea canephora HOM05D005184 ORTHO05D006222 2.4e-16 89.7 89 51.7
BcaB02g09680 Brassica carinata HOM05D000630 ORTHO05D014858 5.0e-14 82.0 83 53.0
Peaxi162Scf00792g00021 Petunia axillaris HOM05D005184 ORTHO05D006222 9.5e-13 77.8 41 90.2
Cc00_g11840 Coffea canephora HOM05D001087 ORTHO05D006222 1.1e-11 74.3 73 50.7
PRCOL_00005775 Prasinoderma coloniale HOM05D005184 ORTHO05D006222 2.3e-11 73.2 87 46.0
RcHm_v2.0_Chr4g0444371 Rosa chinensis HOM05D005184 ORTHO05D006222 3.2e-08 62.8 44 70.5
BolC5t28869H Brassica oleracea HOM05D000630 ORTHO05D014858 2.3e-06 56.6 66 45.5


User provided reference genes

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