Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G148900 Carya illinoinensis HOM05D006231 ORTHO05D007857 6.3e-166 587.4 308 100.0
Cfa009127 Carpinus fangiana HOM05D006231 ORTHO05D007857 2.3e-128 462.6 312 79.2
QL03p062170 Quercus lobata HOM05D006231 ORTHO05D007857 1.9e-122 443.0 318 79.6
Haze_12158 Corylus avellana HOM05D006231 ORTHO05D007857 1.9e-106 389.8 286 73.8
CSS0044234 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.6e-105 386.7 314 70.1
CSS0002380 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 1.4e-104 383.6 312 69.6
ClCG05G025120 Citrullus lanatus HOM05D006231 ORTHO05D007857 2.4e-101 372.9 304 66.1
TAR629G0133 Trochodendron aralioides HOM05D006231 ORTHO05D007857 1.8e-99 366.7 317 66.6
CANSAT01G1818 Cannabis sativa HOM05D006231 ORTHO05D007857 5.1e-99 365.2 316 65.5
MELO3C012017.2 Cucumis melo HOM05D006231 ORTHO05D007857 2.5e-98 362.8 304 64.1
CsaV3_5G031780 Cucumis sativus L. HOM05D006231 ORTHO05D007857 3.3e-98 362.5 304 64.5
Dinv24894 Davidia involucrata HOM05D006231 ORTHO05D007857 3.3e-98 362.5 301 66.1
Prupe.1G258300 Prunus persica HOM05D006231 ORTHO05D007857 7.4e-98 361.3 349 62.8
RcHm_v2.0_Chr4g0444351 Rosa chinensis HOM05D006231 ORTHO05D007857 2.8e-97 359.4 345 63.5
FvH4_4g34910 Fragaria vesca HOM05D006231 ORTHO05D007857 4.8e-97 358.6 328 63.7
MD16G1088300 Malus domestica HOM05D006231 ORTHO05D007857 8.1e-97 357.8 343 62.4
PGSC0003DMG400004132 Solanum tuberosum HOM05D006231 ORTHO05D007857 4.0e-96 355.5 310 64.8
Manes.01G197500 Manihot esculenta HOM05D006231 ORTHO05D007857 5.3e-96 355.1 330 63.0
MD13G1088000 Malus domestica HOM05D006231 ORTHO05D007857 9.0e-96 354.4 356 60.4
Ciclev10032202m.g Citrus clementina HOM05D006231 ORTHO05D007857 3.4e-95 352.4 312 62.5
Sed0009573 Sechium edule HOM05D006231 ORTHO05D007857 3.4e-95 352.4 305 62.3
FAN12G2615 Fragaria x ananassa HOM05D006231 ORTHO05D007857 4.5e-95 352.1 316 64.6
TWI36G0577 Tripterygium wilfordii HOM05D006231 ORTHO05D007857 1.3e-94 350.5 312 62.2
Nn4g22867 Nelumbo nucifera HOM05D006231 ORTHO05D007857 1.7e-94 350.1 322 62.4
Sopen05g001920 Solanum pennellii HOM05D006231 ORTHO05D007857 6.4e-94 348.2 310 63.2
THA.LOC104822056 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 8.4e-94 347.8 305 64.6
Eucgr.B02548 Eucalyptus grandis HOM05D006231 ORTHO05D007857 1.1e-93 347.4 284 64.4
Thecc.02G247800 Theobroma cacao HOM05D006231 ORTHO05D007857 1.4e-93 347.1 307 63.8
Nitab4.5_0004963g0030 Nicotiana tabacum HOM05D006231 ORTHO05D007857 3.2e-93 345.9 309 60.8
vmacro16274 Vaccinium macrocarpon HOM05D006231 ORTHO05D007857 4.2e-93 345.5 287 69.0
COL.COLO4_19536 Corchorus olitorius HOM05D006231 ORTHO05D007857 7.1e-93 344.7 271 68.3
Gorai.009G344200 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.6e-92 343.6 314 62.4
CAN.G505.18 Capsicum annuum HOM05D006231 ORTHO05D007857 2.1e-92 343.2 293 63.8
Carub.0001s2346 Capsella rubella HOM05D006231 ORTHO05D007857 4.6e-92 342.0 323 57.9
Gohir.D05G320900 Gossypium hirsutum HOM05D006231 ORTHO05D007857 4.6e-92 342.0 314 62.1
arahy.Tifrunner.gnm1.ann1.XK2UET Arachis hypogaea HOM05D006231 ORTHO05D007857 7.9e-92 341.3 311 61.4
Hma1.2p1_1017F.1_g248270 Hydrangea macrophylla HOM05D006231 ORTHO05D007857 7.9e-92 341.3 320 63.4
Gohir.A05G318600 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.0e-91 340.9 313 62.3
THA.LOC104822957 Tarenaya hassleriana HOM05D006231 ORTHO05D007857 1.3e-91 340.5 265 67.5
arahy.Tifrunner.gnm1.ann1.FQS9XH Arachis hypogaea HOM05D006231 ORTHO05D007857 1.8e-91 340.1 311 62.1
FAN07G0090 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.8e-91 340.1 330 61.8
FAN22G0458 Fragaria x ananassa HOM05D006231 ORTHO05D007857 1.8e-91 340.1 347 59.7
FAN17G2958 Fragaria x ananassa HOM05D006231 ORTHO05D007857 2.3e-91 339.7 340 60.9
Nitab4.5_0001474g0130 Nicotiana tabacum HOM05D006231 ORTHO05D007857 3.0e-91 339.3 309 60.2
Atru.chr11.1975 Acer truncatum HOM05D006231 ORTHO05D007857 1.9e-90 336.7 320 64.4
Thhalv10008192m.g Eutrema salsugineum HOM05D006231 ORTHO05D007857 2.1e-89 333.2 317 57.7
AL1G37790 Arabidopsis lyrata HOM05D006231 ORTHO05D007857 3.7e-89 332.4 303 59.4
Potri.008G146000 Populus trichocarpa HOM05D006231 ORTHO05D007857 3.7e-89 332.4 242 70.2
Lalb_Chr09g0326451 Lupinus albus HOM05D006231 ORTHO05D007857 8.2e-89 331.3 309 63.8
Aa31LG7G7830 Aethionema arabicum HOM05D006231 ORTHO05D007857 1.1e-88 330.9 320 60.3
PGR119G0912 Punica granatum HOM05D006231 ORTHO05D007857 1.4e-88 330.5 270 62.6
C05p23180 Brassica napus HOM05D006231 ORTHO05D007857 1.8e-88 330.1 239 69.0
Duzib248G0169 Durio zibethinus HOM05D006231 ORTHO05D007857 1.8e-88 330.1 315 60.6
Sp1g21370 Schrenkiella parvula HOM05D006231 ORTHO05D007857 9.0e-88 327.8 307 57.3
BcaC05g26301 Brassica carinata HOM05D006231 ORTHO05D007857 1.2e-87 327.4 244 68.4
BolC5t31019H Brassica oleracea HOM05D006231 ORTHO05D007857 1.2e-87 327.4 244 68.4
AT1G24040 Arabidopsis thaliana HOM05D006231 ORTHO05D007857 1.5e-87 327.0 320 56.9
Cc11_g14350 Coffea canephora HOM05D006231 ORTHO05D007857 2.0e-87 326.6 293 58.0
Oeu046714.1 Olea europaea HOM05D006231 ORTHO05D007857 4.5e-87 325.5 322 56.5
CARHR024340 Cardamine hirsuta HOM05D006231 ORTHO05D007857 7.6e-87 324.7 319 57.4
Actinidia15012 Actinidia chinensis HOM05D006231 ORTHO05D007857 1.0e-86 324.3 310 58.4
BcaB07g32378 Brassica carinata HOM05D006231 ORTHO05D007857 1.3e-86 323.9 321 57.9
Potri.010G095800 Populus trichocarpa HOM05D006231 ORTHO05D007857 2.2e-86 323.2 328 59.8
Gohir.D02G165000 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.4e-85 320.5 310 59.7
Lj2g0015887 Lotus japonicus HOM05D006231 ORTHO05D007857 2.1e-84 316.6 320 59.1
MSTRG.613 Avicennia marina HOM05D006231 ORTHO05D007857 6.0e-84 315.1 310 57.1
Aqoxy3G00933 Aquilegia oxysepala HOM05D006231 ORTHO05D007857 7.9e-84 314.7 313 58.1
Peaxi162Scf00421g00419 Petunia axillaris HOM05D006231 ORTHO05D007857 3.9e-83 312.4 312 56.7
Lsat_1_v5_gn_8_158260 Lactuca sativa HOM05D006231 ORTHO05D007857 8.7e-83 311.2 320 57.5
Psat2g109920 Pisum sativum HOM05D006231 ORTHO05D007857 8.7e-83 311.2 308 56.5
A09p40810 Brassica napus HOM05D006231 ORTHO05D007857 1.1e-82 310.8 214 70.6
BraA09t39576Z Brassica rapa HOM05D006231 ORTHO05D007857 1.1e-82 310.8 214 70.6
SalBow2G0481 Salvia bowleyana HOM05D006231 ORTHO05D007857 2.5e-82 309.7 263 62.0
CSS0037524 Camellia sinensis var. sinensis HOM05D006231 ORTHO05D007857 5.7e-82 308.5 238 65.1
AUR62005324 Chenopodium quinoa HOM05D006231 ORTHO05D007857 7.4e-82 308.1 306 55.2
Glyma.01G034200 Glycine max HOM05D006231 ORTHO05D007857 7.4e-82 308.1 243 66.7
ECA233G1652 Erigeron canadensis HOM05D006231 ORTHO05D007857 2.8e-81 306.2 299 56.9
PSO017G5161 Papaver somniferum HOM05D006231 ORTHO05D007857 6.3e-81 305.1 311 54.0
Hund25325 Selenicereus undatus HOM05D006231 ORTHO05D007857 4.1e-80 302.4 303 58.1
EL10Ac6g13629 Beta vulgaris HOM05D006231 ORTHO05D007857 6.9e-80 301.6 322 54.7
Rhsim12G0123300 Rhododendron simsii HOM05D000030 ORTHO05D000009 6.9e-80 301.6 282 59.6
PSO478G5064 Papaver somniferum HOM05D006231 ORTHO05D007857 9.0e-80 301.2 316 53.8
Sabra10G0068400 Salix brachista HOM05D006231 ORTHO05D007857 2.0e-79 300.1 367 48.0
HanXRQChr08g0208971 Helianthus annuus HOM05D006231 ORTHO05D007857 1.0e-78 297.7 231 65.8
AUR62013974 Chenopodium quinoa HOM05D006231 ORTHO05D007857 1.3e-78 297.4 302 55.3
Migut.L01438 Erythranthe guttata HOM05D006231 ORTHO05D007857 6.5e-78 295.0 217 68.7
Sc11g0001330 Simmondsia chinensis HOM05D006231 ORTHO05D007857 1.4e-77 293.9 307 53.7
Ca_04621_v3 Cicer arietinum L. HOM05D006231 ORTHO05D007857 1.9e-77 293.5 308 57.5
Medtr5g035060 Medicago truncatula HOM05D006231 ORTHO05D007857 9.4e-77 291.2 296 56.8
Glyma.02G032100 Glycine max HOM05D006231 ORTHO05D007857 2.1e-76 290.0 311 54.3
Ah.03g132450 Amaranthus hybridus HOM05D006231 ORTHO05D007857 2.3e-75 286.6 235 63.8
Lj3A1049T58 Lonicera japonica HOM05D006231 ORTHO05D007857 3.0e-75 286.2 244 64.8
TPR.G4354 Trifolium pratense HOM05D006231 ORTHO05D007857 1.5e-74 283.9 239 62.8
unitig_22.g6476 Utricularia gibba HOM05D006231 ORTHO05D007857 6.3e-73 278.5 218 65.1
DCAR_024529 Daucus carota HOM05D006231 ORTHO05D007857 1.4e-72 277.3 195 69.2
Phvul.002G073400 Phaseolus vulgaris HOM05D006231 ORTHO05D007857 9.1e-72 274.6 255 57.6
VMungo1215G3085 Vigna mungo HOM05D006231 ORTHO05D007857 1.2e-71 274.2 326 50.6
Sabra08G0111000 Salix brachista HOM05D006231 ORTHO05D007857 7.7e-71 271.6 197 69.5
CDE10G0954 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 1.6e-68 263.8 258 54.7
MBI15_g12952_MAGBIO Magnolia biondii HOM05D006231 ORTHO05D007857 6.7e-67 258.5 232 58.6
Gorai.005G184900 Gossypium raimondii HOM05D006231 ORTHO05D007857 1.4e-64 250.8 310 51.9
SGA_v2.0_scaffold166G38349 Striga asiatica HOM05D006231 ORTHO05D007857 7.0e-64 248.4 345 45.2
CDE10G0637 Ceratophyllum demersum HOM05D006231 ORTHO05D007857 7.2e-61 238.4 179 67.6
ATR1149G099 Amborella trichopoda HOM05D006231 ORTHO05D007857 5.7e-58 228.8 189 61.9
GSVIVG01020181001 Vitis vinifera HOM05D006231 ORTHO05D007857 5.7e-58 228.8 134 82.1
Medtr5g035040 Medicago truncatula HOM05D006231 ORTHO05D007857 2.6e-55 219.9 229 55.9
Solyc05g005890.2 Solanum lycopersicum HOM05D006231 ORTHO05D007857 7.7e-55 218.4 146 76.7
HPP92_010904 Vanilla planifolia HOM05D006231 ORTHO05D007857 1.7e-54 217.2 291 47.1
SEGI_07841 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 5.0e-54 215.7 240 49.2
Zm00001eb424460 Zea mays HOM05D006231 ORTHO05D007857 2.3e-51 206.8 248 48.4
Os04g0465500 Oryza sativa ssp. japonica HOM05D006231 ORTHO05D007857 4.4e-50 202.6 246 47.6
Psat2g109880 Pisum sativum HOM05D006231 ORTHO05D007857 3.1e-48 196.4 223 49.8
Gohir.A03G141850 Gossypium hirsutum HOM05D006231 ORTHO05D007857 1.2e-47 194.5 221 54.3
SEGI_36756 Sequoiadendron giganteum HOM05D006231 ORTHO05D007857 6.1e-44 182.2 211 47.4
Zm00001eb348680 Zea mays HOM05D006231 ORTHO05D007857 3.4e-42 176.4 245 44.9
Pp3c2_6130 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.1e-40 168.3 213 46.0
Pp3c2_6132 Physcomitrium patens HOM05D006231 ORTHO05D007857 9.1e-40 168.3 213 46.0
Mapoly0005s0071 Marchantia polymorpha HOM05D006231 ORTHO05D007857 2.0e-39 167.2 213 45.1
SMO365G0079 Selaginella moellendorffii HOM05D006231 ORTHO05D007857 3.7e-33 146.4 199 41.7
Dinv31098 Davidia involucrata HOM05D006231 ORTHO05D007857 2.5e-29 133.7 94 75.5
Medtr5g035050 Medicago truncatula HOM05D006231 ORTHO05D007857 2.2e-25 120.6 86 74.4
AagrBONN_evm.TU.Sc2ySwM_368.2752 Anthoceros agrestis HOM05D006231 ORTHO05D007857 1.1e-24 118.2 183 41.5
CBR_g40430 Chara braunii HOM05D017800 ORTHO05D019665 9.2e-24 115.2 208 36.5
TAR622G0489 Trochodendron aralioides HOM05D006231 ORTHO05D007857 2.7e-15 87.0 81 59.3
Cre10.g464750 Chlamydomonas reinhardtii HOM05D006231 ORTHO05D007857 1.0e-06 58.5 239 21.8


User provided reference genes

Program Settings