Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 2.8e-274 948.0 468 100.0
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 1.7e-231 805.8 467 83.7
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 1.1e-225 786.6 468 82.9
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 7.2e-222 773.9 468 78.8
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 2.1e-221 772.3 464 79.5
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.4e-217 759.6 468 78.4
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.5e-214 749.6 463 77.3
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 8.0e-213 743.8 468 75.4
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 8.0e-213 743.8 465 77.2
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 6.8e-212 740.7 465 76.1
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 8.9e-212 740.3 472 75.0
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 7.5e-211 737.3 462 77.9
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 8.3e-210 733.8 467 74.9
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 1.1e-209 733.4 468 76.1
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 9.2e-209 730.3 465 74.6
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.2e-208 729.9 466 74.9
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 2.7e-208 728.8 465 74.4
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 1.0e-207 726.9 465 74.2
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 2.3e-207 725.7 465 74.2
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.3e-206 721.5 465 74.2
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 9.5e-206 720.3 466 73.6
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 1.8e-204 716.1 465 75.1
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 2.3e-204 715.7 485 72.6
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 2.6e-203 712.2 464 74.6
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 2.2e-202 709.1 467 72.4
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 4.9e-202 708.0 468 71.2
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 6.4e-202 707.6 440 75.5
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 1.4e-201 706.4 452 74.8
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.7e-199 699.5 469 72.7
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 5.6e-198 694.5 463 71.9
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 6.2e-197 691.0 466 71.9
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 8.9e-196 687.2 466 71.2
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 2.0e-195 686.0 465 70.5
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 9.8e-195 683.7 470 70.6
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-193 680.2 469 70.8
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.4e-193 679.9 467 69.6
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 4.1e-193 678.3 465 71.0
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 5.4e-193 677.9 465 71.2
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 1.6e-192 676.4 419 77.1
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 2.1e-192 676.0 468 70.1
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.9e-191 671.8 472 69.1
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 1.1e-190 670.2 468 69.9
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.3e-190 668.7 468 69.2
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 5.6e-190 667.9 468 69.4
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 7.3e-190 667.5 468 68.8
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 2.1e-189 666.0 442 73.3
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.6e-189 665.2 468 69.0
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 3.1e-188 662.1 441 72.3
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 4.0e-188 661.8 466 68.0
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 8.9e-188 660.6 490 71.0
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 7.5e-187 657.5 469 67.8
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 2.2e-186 656.0 468 68.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 2.9e-186 655.6 469 68.2
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 4.9e-186 654.8 463 69.1
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.4e-185 653.3 467 67.5
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 2.4e-185 652.5 464 66.8
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 3.0e-183 645.6 466 66.7
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 1.1e-182 643.7 464 66.4
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 3.1e-180 635.6 459 66.0
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 3.1e-180 635.6 462 67.1
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 5.2e-180 634.8 470 66.0
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.4e-179 631.7 464 65.3
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 2.2e-178 629.4 467 64.9
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 3.8e-178 628.6 460 65.7
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 8.4e-178 627.5 459 64.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.4e-177 626.7 461 65.9
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 1.0e-175 620.5 459 64.7
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 3.0e-175 619.0 461 65.5
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-174 617.1 461 65.1
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 2.5e-174 615.9 461 65.5
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 1.6e-173 613.2 461 64.6
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-173 613.2 461 64.6
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 3.6e-173 612.1 460 63.9
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 4.8e-173 611.7 469 64.6
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 6.2e-173 611.3 421 69.6
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 1.4e-172 610.1 464 64.4
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-172 609.4 463 64.8
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-172 609.4 460 63.0
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 4.0e-172 608.6 464 63.4
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 2.0e-171 606.3 461 64.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 2.6e-171 605.9 460 63.0
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-171 605.5 460 63.0
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 3.4e-171 605.5 460 62.0
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 4.4e-171 605.1 460 62.2
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 5.8e-171 604.7 460 62.8
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 9.9e-171 604.0 460 62.8
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 9.9e-171 604.0 460 62.4
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.4e-169 600.1 459 63.0
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.6e-168 596.7 459 63.8
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 1.6e-168 596.7 454 65.0
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 4.6e-168 595.1 465 61.7
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 4.8e-165 585.1 463 62.6
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.3e-162 577.0 462 61.0
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 2.9e-162 575.9 435 62.3
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 8.4e-162 574.3 431 62.6
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 1.4e-161 573.5 437 65.9
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 1.6e-160 570.1 438 62.6
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 2.7e-160 569.3 467 57.6
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 6.0e-160 568.2 464 64.9
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 6.7e-159 564.7 468 61.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 2.5e-158 562.8 485 57.9
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.6e-158 561.6 460 60.0
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 3.1e-156 555.8 460 60.0
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 5.3e-156 555.1 494 58.3
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 6.9e-156 554.7 460 59.6
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.2e-154 549.7 436 61.0
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 1.4e-153 547.0 344 77.0
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 2.5e-153 546.2 464 57.5
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-152 543.9 438 61.0
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 1.3e-149 533.9 420 61.7
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 1.3e-149 533.9 456 55.5
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.2e-149 531.6 445 58.4
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 1.5e-147 526.9 461 57.5
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-146 523.9 464 56.5
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.0e-143 514.2 354 69.8
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 2.6e-139 499.6 387 62.5
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 1.9e-137 493.4 433 58.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 2.3e-135 486.5 508 50.4
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 5.1e-135 485.3 365 63.3
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.8e-132 476.9 446 55.6
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 8.2e-125 451.4 503 48.7
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.8e-103 380.6 470 44.7
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 1.2e-88 331.3 474 39.7
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 1.4e-87 327.8 236 70.3
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 1.3e-82 311.2 427 41.2
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.5e-78 297.7 200 73.5
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 1.5e-78 297.7 264 57.2
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 2.6e-78 297.0 200 73.5
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 2.6e-78 297.0 198 72.7
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 4.6e-75 286.2 189 74.6
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 3.5e-67 260.0 225 57.8
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 1.7e-58 231.1 148 71.6
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-56 224.2 224 53.6
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-54 215.7 221 52.9
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 3.8e-53 213.4 377 38.2
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-50 204.1 315 40.6
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 5.8e-46 189.5 273 42.1
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 2.7e-43 180.6 110 73.6
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 8.4e-37 159.1 254 39.4
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 7.1e-36 156.0 177 49.7
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.5e-33 148.3 116 62.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.8e-32 144.1 214 40.7
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.6e-30 137.5 115 60.9
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 5.9e-30 136.3 93 78.5
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.2e-29 134.4 84 73.8
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 5.0e-29 133.3 132 50.8
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 6.5e-29 132.9 214 40.2
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.4e-28 131.7 90 73.3
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 8.7e-26 122.5 144 45.8
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.9e-25 121.3 144 46.5
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-24 118.2 109 53.2
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 4.8e-24 116.7 218 39.0
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 3.1e-23 114.0 106 53.8
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 4.1e-23 113.6 115 54.8
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-21 108.6 57 78.9
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-20 105.5 76 60.5
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.5e-20 104.4 76 60.5
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 3.2e-20 104.0 78 59.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 3.6e-19 100.5 56 78.6
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 3.0e-18 97.4 99 50.5
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 5.1e-18 96.7 119 45.4
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-16 90.9 63 61.9
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.9e-15 86.3 56 66.1
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.8e-13 80.5 183 29.0
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.9e-12 78.2 176 30.7
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 5.5e-12 76.6 176 30.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 4.7e-11 73.6 64 53.1
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.0e-10 70.9 52 57.7
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 1.1e-09 68.9 149 30.9
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 3.1e-07 60.8 49 55.1
SMO331G0015 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.1e-07 60.8 168 27.4
A09p40560 Brassica napus HOM05D004011 ORTHO05D033156 5.3e-07 60.1 51 51.0
A07p13570 Brassica napus HOM05D004011 ORTHO05D006437 9.1e-07 59.3 56 57.1
C05p23620 Brassica napus HOM05D004011 ORTHO05D033156 1.2e-06 58.9 51 52.9
SMO331G0031 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 1.6e-06 58.5 63 44.4
SMO331G0064 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 1.6e-06 58.5 63 44.4
SMO110G0012 Selaginella moellendorffii HOM05D004739 ORTHO05D005784 3.5e-06 57.4 172 26.7
Nitab4.5_0002852g0030 Nicotiana tabacum HOM05D001347 ORTHO05D001198 4.5e-06 57.0 47 53.2
RcHm_v2.0_Chr2g0130381 Rosa chinensis HOM05D000321 ORTHO05D000204 4.5e-06 57.0 61 45.9


User provided reference genes

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