Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G137400 Carya illinoinensis HOM05D005097 ORTHO05D006186 4.2e-77 291.6 181 100.0
Haze_12031 Corylus avellana HOM05D005097 ORTHO05D006186 2.6e-58 229.2 182 84.1
CiPaw.06G083100 Carya illinoinensis HOM05D005097 ORTHO05D006186 6.3e-57 224.6 184 83.2
Cfa009001 Carpinus fangiana HOM05D005097 ORTHO05D006186 2.4e-56 222.6 182 80.2
QL03p064734 Quercus lobata HOM05D005097 ORTHO05D006186 5.7e-50 201.4 188 74.5
Atru.chr11.1825 Acer truncatum HOM05D005097 ORTHO05D006186 7.5e-42 174.5 186 58.6
Prupe.1G272000 Prunus persica HOM05D005097 ORTHO05D006186 6.3e-41 171.4 193 61.1
Dinv34170 Davidia involucrata HOM05D005097 ORTHO05D006186 8.3e-41 171.0 186 56.5
Manes.01G187400 Manihot esculenta HOM05D005097 ORTHO05D006186 1.6e-39 166.8 195 71.8
Thecc.02G349700 Theobroma cacao HOM05D005097 ORTHO05D006186 1.6e-39 166.8 195 68.7
CiPaw.05G214900 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.0e-39 166.4 147 76.9
Duzib251G0564 Durio zibethinus HOM05D005097 ORTHO05D006186 1.7e-38 163.3 189 57.7
Gohir.A03G099800 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.7e-38 163.3 191 57.1
Gorai.005G140300 Gossypium raimondii HOM05D005097 ORTHO05D006186 1.5e-37 160.2 190 55.3
Gohir.A13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 1.9e-37 159.8 203 55.7
Gohir.D13G073300 Gossypium hirsutum HOM05D005097 ORTHO05D006186 2.5e-37 159.5 204 53.9
Gorai.013G084000 Gossypium raimondii HOM05D005097 ORTHO05D006186 2.5e-37 159.5 204 53.9
Manes.05G099600 Manihot esculenta HOM05D005097 ORTHO05D006186 4.3e-37 158.7 195 65.1
COL.COLO4_22981 Corchorus olitorius HOM05D005097 ORTHO05D006186 5.6e-37 158.3 188 60.6
TAR629G2181 Trochodendron aralioides HOM05D005097 ORTHO05D006186 5.6e-37 158.3 189 55.6
Gohir.D02G124700 Gossypium hirsutum HOM05D005097 ORTHO05D006186 9.5e-37 157.5 190 54.7
Cpa.g.c36484 Carica papaya HOM05D005097 ORTHO05D006186 1.5e-34 150.2 188 62.8
Hma1.2p1_0265F.1_g106660 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 8.3e-33 144.4 186 53.2
Hma1.2p1_0598F.1_g186730 Hydrangea macrophylla HOM05D005097 ORTHO05D006186 1.1e-32 144.1 186 52.7
CiPaw.13G150200 Carya illinoinensis HOM05D005097 ORTHO05D006186 2.0e-31 139.8 132 82.6
FAN22G0952 Fragaria x ananassa HOM05D005097 ORTHO05D006186 3.5e-31 139.0 174 60.9
FAN07G0101 Fragaria x ananassa HOM05D005097 ORTHO05D006186 6.0e-31 138.3 182 54.9
FAN12G0365 Fragaria x ananassa HOM05D005097 ORTHO05D006186 1.0e-30 137.5 175 60.6
FAN17G3076 Fragaria x ananassa HOM05D005097 ORTHO05D006186 2.3e-30 136.3 181 54.7
TAR371G0839 Trochodendron aralioides HOM05D005097 ORTHO05D006186 3.9e-30 135.6 182 52.2
RcHm_v2.0_Chr4g0440081 Rosa chinensis HOM05D005097 ORTHO05D006186 6.6e-30 134.8 187 59.9
TAR622G0694 Trochodendron aralioides HOM05D005097 ORTHO05D006186 1.1e-29 134.0 173 54.3
Ciclev10032896m.g Citrus clementina HOM05D005097 ORTHO05D006186 8.0e-28 127.9 193 60.1
Nn4g23108 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.8e-27 126.7 189 45.5
CSS0049826 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 4.0e-27 125.6 185 48.6
Lj2g0000799 Lotus japonicus HOM05D005097 ORTHO05D006186 8.9e-27 124.4 187 47.6
Phvul.002G088000 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 9.8e-26 120.9 181 52.5
Rhsim12G0061600 Rhododendron simsii HOM05D005097 ORTHO05D006186 2.2e-25 119.8 185 47.0
Glyma.01G045200 Glycine max HOM05D005097 ORTHO05D006186 6.4e-25 118.2 196 44.4
Glyma.08G299000 Glycine max HOM05D005097 ORTHO05D006186 2.4e-24 116.3 188 56.9
Ca_04768_v3 Cicer arietinum L. HOM05D005097 ORTHO05D006186 2.1e-23 113.2 192 44.8
Psat2g121760 Pisum sativum HOM05D005097 ORTHO05D006186 1.0e-22 110.9 191 46.6
VMungo1215G0414 Vigna mungo HOM05D005097 ORTHO05D006186 2.3e-22 109.8 188 52.7
Oeu027980.1 Olea europaea HOM05D005097 ORTHO05D006186 3.9e-22 109.0 188 57.4
MBI05_g00383_MAGBIO Magnolia biondii HOM05D005097 ORTHO05D006186 5.1e-22 108.6 190 51.6
Cc11_g13240 Coffea canephora HOM05D005097 ORTHO05D006186 6.6e-22 108.2 184 46.2
MD16G1075200 Malus domestica HOM05D005097 ORTHO05D006186 6.6e-22 108.2 156 49.4
Nn3g17188 Nelumbo nucifera HOM05D005097 ORTHO05D006186 1.5e-21 107.1 188 55.9
Phvul.003G067200 Phaseolus vulgaris HOM05D005097 ORTHO05D006186 2.5e-21 106.3 167 43.7
Glyma.18G121900 Glycine max HOM05D005097 ORTHO05D006186 3.3e-21 105.9 191 55.0
Oeu054897.1 Olea europaea HOM05D005097 ORTHO05D006186 3.3e-21 105.9 186 50.0
A07p36180 Brassica napus HOM05D005097 ORTHO05D006186 7.3e-21 104.8 204 44.6
BraA07t31193Z Brassica rapa HOM05D005097 ORTHO05D006186 7.3e-21 104.8 204 44.6
BcaC08g46423 Brassica carinata HOM05D005097 ORTHO05D006186 9.5e-21 104.4 204 46.1
MSTRG.689 Avicennia marina HOM05D005097 ORTHO05D006186 1.2e-20 104.0 195 43.6
BcaB03g14754 Brassica carinata HOM05D005097 ORTHO05D006186 1.6e-20 103.6 200 41.5
C06p43570 Brassica napus HOM05D005097 ORTHO05D006186 1.6e-20 103.6 204 45.6
VMungo0251G1975 Vigna mungo HOM05D005097 ORTHO05D006186 1.6e-20 103.6 191 48.7
MSTRG.13412 Avicennia marina HOM05D005097 ORTHO05D006186 2.8e-20 102.8 194 45.9
Dinv16629 Davidia involucrata HOM05D001598 ORTHO05D002757 2.8e-20 102.8 185 40.0
BolC6t39429H Brassica oleracea HOM05D005097 ORTHO05D006186 4.7e-20 102.1 205 45.4
Oeu013625.1 Olea europaea HOM05D005097 ORTHO05D006186 6.2e-20 101.7 188 50.5
PSO832G2020 Papaver somniferum HOM05D005097 ORTHO05D006186 6.2e-20 101.7 210 46.7
MSTRG.7812 Avicennia marina HOM05D005097 ORTHO05D006186 8.1e-20 101.3 211 39.8
CARHR025020 Cardamine hirsuta HOM05D005097 ORTHO05D006186 8.1e-20 101.3 193 43.0
BcaC08g45866 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-19 100.9 199 42.7
C06p36640 Brassica napus HOM05D005097 ORTHO05D006186 1.1e-19 100.9 199 40.7
BolC6t38773H Brassica oleracea HOM05D005097 ORTHO05D006186 1.1e-19 100.9 199 42.7
Aqoxy3G03339 Aquilegia oxysepala HOM05D005097 ORTHO05D006186 1.8e-19 100.1 143 62.2
Migut.E00105 Erythranthe guttata HOM05D005097 ORTHO05D006186 2.3e-19 99.8 196 47.4
Sp5g24880 Schrenkiella parvula HOM05D005097 ORTHO05D006186 2.3e-19 99.8 205 50.7
A07p31380 Brassica napus HOM05D005097 ORTHO05D006186 3.1e-19 99.4 199 42.2
BraA07t30773Z Brassica rapa HOM05D005097 ORTHO05D006186 3.1e-19 99.4 199 42.2
Ah.03g135230 Amaranthus hybridus HOM05D005097 ORTHO05D006186 5.2e-19 98.6 198 50.5
BcaB05g24483 Brassica carinata HOM05D005097 ORTHO05D006186 5.2e-19 98.6 193 47.2
Oeu045409.1 Olea europaea HOM05D005097 ORTHO05D006186 5.2e-19 98.6 189 49.2
Sp1g21860 Schrenkiella parvula HOM05D005097 ORTHO05D006186 5.2e-19 98.6 198 39.9
BcaC03g15115 Brassica carinata HOM05D005097 ORTHO05D006186 8.9e-19 97.8 202 46.0
BolC2t08749H Brassica oleracea HOM05D005097 ORTHO05D006186 8.9e-19 97.8 202 46.0
ClCG05G024410 Citrullus lanatus HOM05D005097 ORTHO05D006186 8.9e-19 97.8 183 46.4
DCAR_007146 Daucus carota HOM05D005097 ORTHO05D006186 8.9e-19 97.8 206 38.8
Carub.0001s2406 Capsella rubella HOM05D005097 ORTHO05D006186 1.2e-18 97.4 198 51.0
Thhalv10019695m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 1.2e-18 97.4 204 48.0
PSO063G6767 Papaver somniferum HOM05D005097 ORTHO05D006186 1.5e-18 97.1 165 51.5
Sed0019373 Sechium edule HOM05D005097 ORTHO05D006186 1.5e-18 97.1 182 41.8
A08p27630 Brassica napus HOM05D005097 ORTHO05D006186 2.0e-18 96.7 198 41.4
BraA08t34700Z Brassica rapa HOM05D005097 ORTHO05D006186 2.0e-18 96.7 198 41.4
Lsat_1_v5_gn_3_52761 Lactuca sativa HOM05D005097 ORTHO05D006186 2.0e-18 96.7 197 40.1
BcaB03g15503 Brassica carinata HOM05D005097 ORTHO05D006186 4.4e-18 95.5 200 43.0
Eucgr.B03425 Eucalyptus grandis HOM05D005097 ORTHO05D006186 5.8e-18 95.1 189 50.3
BcaC07g39258 Brassica carinata HOM05D005097 ORTHO05D006186 7.5e-18 94.7 204 39.7
C08p22680 Brassica napus HOM05D005097 ORTHO05D006186 7.5e-18 94.7 204 39.7
BolC8t49906H Brassica oleracea HOM05D005097 ORTHO05D006186 7.5e-18 94.7 204 39.7
A02p16130 Brassica napus HOM05D005097 ORTHO05D006186 2.2e-17 93.2 202 43.1
BraA02t06672Z Brassica rapa HOM05D005097 ORTHO05D006186 2.2e-17 93.2 202 43.1
THA.LOC104822921 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 2.2e-17 93.2 168 54.8
C02p26790 Brassica napus HOM05D005097 ORTHO05D006186 2.9e-17 92.8 202 44.1
Nitab4.5_0002151g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 2.9e-17 92.8 198 42.9
Thhalv10008900m.g Eutrema salsugineum HOM05D005097 ORTHO05D006186 3.7e-17 92.4 213 36.6
Lsat_1_v5_gn_4_9981 Lactuca sativa HOM05D005097 ORTHO05D006186 3.7e-17 92.4 193 39.4
MD13G1074000 Malus domestica HOM05D005097 ORTHO05D006186 3.7e-17 92.4 147 43.5
DCAR_027404 Daucus carota HOM05D005097 ORTHO05D006186 4.9e-17 92.0 184 37.5
Eucgr.G02516 Eucalyptus grandis HOM05D005097 ORTHO05D006186 4.9e-17 92.0 191 51.3
MSTRG.2351 Avicennia marina HOM05D005097 ORTHO05D006186 8.3e-17 91.3 182 42.3
Peaxi162Scf00541g00067 Petunia axillaris HOM05D005097 ORTHO05D006186 1.4e-16 90.5 193 38.3
PGR102G3149 Punica granatum HOM05D005097 ORTHO05D006186 1.4e-16 90.5 140 43.6
AL2G28940 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.9e-16 90.1 168 49.4
MELO3C012082.2 Cucumis melo HOM05D005097 ORTHO05D006186 1.9e-16 90.1 180 45.0
SalBow2G3468 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.9e-16 90.1 197 41.1
Solyc05g007240.1 Solanum lycopersicum HOM05D005097 ORTHO05D006186 4.1e-16 89.0 203 39.4
THA.LOC104822110 Tarenaya hassleriana HOM05D005097 ORTHO05D006186 4.1e-16 89.0 209 45.9
Aa31LG7G8220 Aethionema arabicum HOM05D005097 ORTHO05D006186 7.1e-16 88.2 200 39.0
Migut.L01312 Erythranthe guttata HOM05D005097 ORTHO05D006186 7.1e-16 88.2 197 40.1
SalBow2G0279 Salvia bowleyana HOM05D005097 ORTHO05D006186 7.1e-16 88.2 197 40.1
Sopen05g003200 Solanum pennellii HOM05D005097 ORTHO05D006186 7.1e-16 88.2 200 39.0
BcaB03g12015 Brassica carinata HOM05D005097 ORTHO05D006186 9.2e-16 87.8 191 37.7
Carub.0002s1644 Capsella rubella HOM05D005097 ORTHO05D006186 3.5e-15 85.9 78 64.1
PGSC0003DMG400023051 Solanum tuberosum HOM05D005097 ORTHO05D006186 4.6e-15 85.5 193 39.4
SGA_v2.0_scaffold389G50580 Striga asiatica HOM05D005097 ORTHO05D006186 4.6e-15 85.5 199 37.2
Nitab4.5_0007561g0010 Nicotiana tabacum HOM05D005097 ORTHO05D006186 6.0e-15 85.1 202 41.6
Actinidia07840 Actinidia chinensis HOM05D005097 ORTHO05D006186 2.3e-14 83.2 138 39.9
A09p40330 Brassica napus HOM05D005097 ORTHO05D006186 2.3e-14 83.2 204 38.2
BraA09t39531Z Brassica rapa HOM05D005097 ORTHO05D006186 2.3e-14 83.2 204 38.2
CARHR062830 Cardamine hirsuta HOM05D005097 ORTHO05D006186 3.9e-14 82.4 77 63.6
Eucgr.G02514 Eucalyptus grandis HOM05D005097 ORTHO05D006186 3.9e-14 82.4 192 40.1
Aa31LG4G11040 Aethionema arabicum HOM05D005097 ORTHO05D006186 6.6e-14 81.6 65 64.6
EL10Ac6g13179 Beta vulgaris HOM05D005097 ORTHO05D006186 8.6e-14 81.3 199 39.7
BcaC05g26373 Brassica carinata HOM05D005097 ORTHO05D006186 8.6e-14 81.3 204 37.7
BolC5t31142H Brassica oleracea HOM05D005097 ORTHO05D006186 8.6e-14 81.3 204 37.7
Sc04g0008280 Simmondsia chinensis HOM05D005097 ORTHO05D006186 8.6e-14 81.3 184 40.8
Ah.02g131220 Amaranthus hybridus HOM05D005097 ORTHO05D006186 1.1e-13 80.9 189 46.0
AT1G26920 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 1.9e-13 80.1 143 44.1
AT1G69760 Arabidopsis thaliana HOM05D005097 ORTHO05D006186 2.5e-13 79.7 76 60.5
ECA234G2746 Erigeron canadensis HOM05D005097 ORTHO05D006186 2.5e-13 79.7 71 66.2
PGR119G1789 Punica granatum HOM05D005097 ORTHO05D006186 4.3e-13 79.0 70 62.9
AL1G38630 Arabidopsis lyrata HOM05D005097 ORTHO05D006186 1.6e-12 77.0 75 60.0
SalBow8G4444 Salvia bowleyana HOM05D005097 ORTHO05D006186 1.6e-12 77.0 196 34.7
CSS0023945 Camellia sinensis var. sinensis HOM05D005097 ORTHO05D006186 4.0e-11 72.4 187 36.9
ATR0564G527 Amborella trichopoda HOM05D005097 ORTHO05D006186 6.8e-11 71.6 191 37.2
AUR62028807 Chenopodium quinoa HOM05D005097 ORTHO05D006186 1.7e-09 67.0 75 53.3
BcaC08g45865 Brassica carinata HOM05D005097 ORTHO05D006186 1.1e-08 64.3 149 38.3
HanXRQChr17g0545191 Helianthus annuus HOM05D005097 ORTHO05D006186 1.4e-08 63.9 68 61.8
BNapus_Darmor_BZH_scaffold_256p00010 Brassica napus HOM05D005097 ORTHO05D006186 3.5e-07 59.3 176 38.6


User provided reference genes

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