Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G135100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.7e-45 185.7 95 100.0
CiPaw.06G085100 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.3e-29 132.9 95 73.7
Cfa008979 Carpinus fangiana HOM05D007096 ORTHO05D008288 1.1e-28 129.8 95 73.7
Haze_12011 Corylus avellana HOM05D007096 ORTHO05D008288 4.2e-28 127.9 95 72.6
Manes.05G101400 Manihot esculenta HOM05D007096 ORTHO05D008288 1.6e-22 109.4 95 60.0
Ciclev10033178m.g Citrus clementina HOM05D007096 ORTHO05D008288 2.2e-21 105.5 96 60.4
Nn4g23168 Nelumbo nucifera HOM05D007096 ORTHO05D008288 6.5e-21 104.0 93 58.1
Sabra08G0063800 Salix brachista HOM05D007096 ORTHO05D008288 2.5e-20 102.1 93 59.1
Nn3g17242 Nelumbo nucifera HOM05D007096 ORTHO05D008288 4.2e-20 101.3 93 57.0
TAR622G0633 Trochodendron aralioides HOM05D000618 ORTHO05D000454 9.4e-20 100.1 92 59.8
Potri.008G086100 Populus trichocarpa HOM05D007096 ORTHO05D008288 4.7e-19 97.8 95 56.8
RcHm_v2.0_Chr4g0439851 Rosa chinensis HOM05D007096 ORTHO05D008288 1.0e-18 96.7 96 58.3
CSS0030953 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 3.0e-18 95.1 96 56.2
Prupe.1G274800 Prunus persica HOM05D007096 ORTHO05D008288 5.2e-18 94.4 98 55.1
Thecc.02G346100 Theobroma cacao HOM05D007096 ORTHO05D008288 1.5e-17 92.8 97 54.6
TAR629G1384 Trochodendron aralioides HOM05D000618 ORTHO05D000454 1.5e-17 92.8 88 62.5
TAR371G0768 Trochodendron aralioides HOM05D007096 ORTHO05D008288 2.0e-17 92.4 94 53.2
Ah.02g129680 Amaranthus hybridus HOM05D007096 ORTHO05D008288 2.6e-17 92.0 95 52.6
Manes.01G185500 Manihot esculenta HOM05D007096 ORTHO05D008288 4.4e-17 91.3 95 50.5
Duzib268G0913 Durio zibethinus HOM05D007096 ORTHO05D008288 5.7e-17 90.9 97 57.7
Potri.010G169300 Populus trichocarpa HOM05D007096 ORTHO05D008288 5.7e-17 90.9 95 52.6
TAR374G0516 Trochodendron aralioides HOM05D007096 ORTHO05D008288 5.7e-17 90.9 92 52.2
CSS0036898 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.3e-16 89.7 92 56.5
CSS0038022 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 1.3e-16 89.7 92 56.5
DCAR_031024 Daucus carota HOM05D007096 ORTHO05D008288 2.2e-16 89.0 95 53.7
Lalb_Chr04g0256051 Lupinus albus HOM05D015099 ORTHO05D008288 6.3e-16 87.4 96 49.0
Gohir.D12G168200 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.1e-15 86.7 95 55.8
Gorai.008G181100 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.1e-15 86.7 95 55.8
Gohir.D05G304900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.4e-15 86.3 97 53.6
Sabra10G0129100 Salix brachista HOM05D007096 ORTHO05D008288 2.4e-15 85.5 95 49.5
Gorai.009G324600 Gossypium raimondii HOM05D007096 ORTHO05D008288 3.1e-15 85.1 97 52.6
Lalb_Chr10g0098271 Lupinus albus HOM05D015099 ORTHO05D008288 3.1e-15 85.1 88 46.6
Gohir.D02G125800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.0e-15 84.0 95 52.6
Gohir.A12G165100 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.2e-14 83.2 95 53.7
Gorai.005G141500 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.2e-14 83.2 95 51.6
Gohir.A05G183700 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.7e-14 80.5 97 51.5
Atru.chr9.225 Acer truncatum HOM05D007096 ORTHO05D008288 1.3e-13 79.7 84 53.6
QL10p017020 Quercus lobata HOM05D007096 ORTHO05D008288 1.7e-13 79.3 90 52.2
Rhsim12G0063900 Rhododendron simsii HOM05D007096 ORTHO05D008288 1.7e-13 79.3 104 48.1
ClCG11G009950 Citrullus lanatus HOM05D007096 ORTHO05D008288 2.9e-13 78.6 96 49.0
CSS0038065 Camellia sinensis var. sinensis HOM05D007096 ORTHO05D008288 6.5e-13 77.4 88 53.4
Nitab4.5_0000145g0050 Nicotiana tabacum HOM05D007096 ORTHO05D008288 8.6e-13 77.0 85 51.8
Glyma.02G107400 Glycine max HOM05D015099 ORTHO05D008288 1.5e-12 76.3 108 44.4
Gohir.A03G101000 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.5e-12 76.3 95 49.5
CiPaw.11G044600 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.9e-12 75.9 88 52.3
Ciclev10023845m.g Citrus clementina HOM05D007096 ORTHO05D008288 1.9e-12 75.9 89 47.2
PGSC0003DMG400023201 Solanum tuberosum HOM05D007096 ORTHO05D008288 1.9e-12 75.9 88 47.7
CsaV3_2G010680 Cucumis sativus L. HOM05D007096 ORTHO05D008288 3.2e-12 75.1 98 51.0
Lsat_1_v5_gn_5_19601 Lactuca sativa HOM05D007096 ORTHO05D008288 9.5e-12 73.6 90 47.8
CiPaw.12G013300 Carya illinoinensis HOM05D007096 ORTHO05D008288 1.2e-11 73.2 90 48.9
Eucgr.B03446 Eucalyptus grandis HOM05D007096 ORTHO05D008288 1.2e-11 73.2 89 51.7
Thecc.03G087500 Theobroma cacao HOM05D007096 ORTHO05D008288 1.2e-11 73.2 94 50.0
Cc00_g23090 Coffea canephora HOM05D007096 ORTHO05D008288 1.6e-11 72.8 94 46.8
Gohir.D04G191800 Gossypium hirsutum HOM05D007096 ORTHO05D008288 1.6e-11 72.8 96 46.9
Lsat_1_v5_gn_9_15420 Lactuca sativa HOM05D007096 ORTHO05D008288 1.6e-11 72.8 96 41.7
Prupe.5G193600 Prunus persica HOM05D007096 ORTHO05D008288 1.6e-11 72.8 94 43.6
Gohir.A04G147500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.1e-11 72.4 96 47.9
PGSC0003DMG400018456 Solanum tuberosum HOM05D007096 ORTHO05D008288 2.1e-11 72.4 96 46.9
Manes.14G078100 Manihot esculenta HOM05D007096 ORTHO05D008288 3.6e-11 71.6 87 48.3
Sp5g24710 Schrenkiella parvula HOM05D009494 ORTHO05D011604 3.6e-11 71.6 117 39.3
Lj4g0000471 Lotus japonicus HOM05D007096 ORTHO05D008288 4.7e-11 71.2 88 48.9
Peaxi162Scf00222g00814 Petunia axillaris HOM05D007096 ORTHO05D008288 4.7e-11 71.2 78 51.3
Gorai.012G187200 Gossypium raimondii HOM05D007096 ORTHO05D008288 8.0e-11 70.5 96 45.8
Peaxi162Scf00911g00042 Petunia axillaris HOM05D007096 ORTHO05D008288 1.0e-10 70.1 93 40.9
RcHm_v2.0_Chr7g0181441 Rosa chinensis HOM05D007096 ORTHO05D008288 1.0e-10 70.1 90 45.6
Solyc05g007650.1 Solanum lycopersicum HOM05D007096 ORTHO05D008288 2.3e-10 68.9 96 46.9
Phvul.009G187200 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 3.0e-10 68.6 88 46.6
Eucgr.G02504 Eucalyptus grandis HOM05D007096 ORTHO05D008288 4.0e-10 68.2 89 46.1
Manes.06G092300 Manihot esculenta HOM05D007096 ORTHO05D008288 4.0e-10 68.2 94 44.7
Sed0016779 Sechium edule HOM05D007096 ORTHO05D008288 5.2e-10 67.8 92 47.8
AT1G69588 Arabidopsis thaliana HOM05D009494 ORTHO05D011604 1.2e-09 66.6 112 39.3
Sed0002990 Sechium edule HOM05D007096 ORTHO05D008288 1.2e-09 66.6 95 45.3
Phvul.002G085300 Phaseolus vulgaris HOM05D015099 ORTHO05D008288 1.5e-09 66.2 110 40.9
FAN13G0716 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.0e-09 65.9 89 43.8
Glyma.17G100200 Glycine max HOM05D007096 ORTHO05D008288 2.0e-09 65.9 90 47.8
FAN08G2460 Fragaria x ananassa HOM05D007096 ORTHO05D008288 2.6e-09 65.5 89 43.8
COL.COLO4_09292 Corchorus olitorius HOM05D007096 ORTHO05D008288 4.4e-09 64.7 95 42.1
Glyma.04G169400 Glycine max HOM05D007096 ORTHO05D008288 5.7e-09 64.3 88 46.6
VMungo1215G2026 Vigna mungo HOM05D015099 ORTHO05D008288 5.7e-09 64.3 111 41.4
BcaC03g15096 Brassica carinata HOM05D009494 ORTHO05D011604 9.8e-09 63.5 117 35.9
C02p26570 Brassica napus HOM05D009494 ORTHO05D011604 9.8e-09 63.5 117 35.9
BolC2t08728H Brassica oleracea HOM05D009494 ORTHO05D011604 9.8e-09 63.5 117 35.9
Dinv19962 Davidia involucrata HOM05D007096 ORTHO05D008288 9.8e-09 63.5 75 53.3
Glyma.06G194000 Glycine max HOM05D007096 ORTHO05D008288 9.8e-09 63.5 89 46.1
Ah.03g135070 Amaranthus hybridus HOM05D007096 ORTHO05D008288 1.3e-08 63.2 72 48.6
A07p35950 Brassica napus HOM05D009494 ORTHO05D011604 1.3e-08 63.2 113 37.2
DCAR_016556 Daucus carota HOM05D007096 ORTHO05D008288 1.3e-08 63.2 90 44.4
Migut.L01293 Erythranthe guttata HOM05D007096 ORTHO05D008288 1.3e-08 63.2 92 46.7
Oeu047297.1 Olea europaea HOM05D007096 ORTHO05D008288 1.7e-08 62.8 95 42.1
BraA07t31178Z Brassica rapa HOM05D009494 ORTHO05D011604 2.8e-08 62.0 113 37.2
Oeu054876.1 Olea europaea HOM05D007096 ORTHO05D008288 3.7e-08 61.6 99 42.4
Thhalv10019320m.g Eutrema salsugineum HOM05D009494 ORTHO05D011604 4.9e-08 61.2 113 38.1
Lj1g0007220 Lotus japonicus HOM05D007096 ORTHO05D008288 4.9e-08 61.2 85 47.1
Carub.0002s1626 Capsella rubella HOM05D009494 ORTHO05D011604 8.3e-08 60.5 112 36.6
COL.COLO4_23015 Corchorus olitorius HOM05D007096 ORTHO05D008288 8.3e-08 60.5 79 49.4
CARHR062540 Cardamine hirsuta HOM05D009494 ORTHO05D011604 1.1e-07 60.1 106 36.8
Os08g0438701 Oryza sativa ssp. japonica HOM05D007096 ORTHO05D008288 1.1e-07 60.1 93 41.9
Phvul.003G190100 Phaseolus vulgaris HOM05D007096 ORTHO05D008288 1.1e-07 60.1 90 42.2
BcaC08g46400 Brassica carinata HOM05D009494 ORTHO05D011604 1.4e-07 59.7 113 36.3
BcaNung06224 Brassica carinata HOM05D009494 ORTHO05D011604 1.4e-07 59.7 113 36.3
BolC6t39409H Brassica oleracea HOM05D009494 ORTHO05D011604 1.4e-07 59.7 113 36.3
BraA02t06659Z Brassica rapa HOM05D009494 ORTHO05D011604 1.4e-07 59.7 111 36.0
Gorai.008G193000 Gossypium raimondii HOM05D007096 ORTHO05D008288 1.4e-07 59.7 88 42.0
BcaB03g14731 Brassica carinata HOM05D009494 ORTHO05D011604 1.8e-07 59.3 113 36.3
Lalb_Chr13g0303241 Lupinus albus HOM05D007096 ORTHO05D008288 1.8e-07 59.3 89 43.8
BcaB03g15485 Brassica carinata HOM05D009494 ORTHO05D011604 2.4e-07 58.9 112 34.8
Gohir.D12G179900 Gossypium hirsutum HOM05D007096 ORTHO05D008288 2.4e-07 58.9 88 40.9
ClCG04G012240 Citrullus lanatus HOM05D007096 ORTHO05D008288 3.1e-07 58.5 89 41.6
Lsat_1_v5_gn_4_108521 Lactuca sativa HOM05D007096 ORTHO05D008288 3.1e-07 58.5 92 41.3
THA.LOC104822126 Tarenaya hassleriana HOM05D009494 ORTHO05D011604 3.1e-07 58.5 113 38.1
A07p31500 Brassica napus HOM05D009494 ORTHO05D011604 4.1e-07 58.2 108 35.2
Glyma.01G047800 Glycine max HOM05D015099 ORTHO05D008288 4.1e-07 58.2 108 38.9
C06p36810 Brassica napus HOM05D009494 ORTHO05D011604 5.4e-07 57.8 111 32.4
Aa31LG4G11160 Aethionema arabicum HOM05D009494 ORTHO05D011604 7.0e-07 57.4 113 37.2
A02p15990 Brassica napus HOM05D009494 ORTHO05D011604 7.0e-07 57.4 117 34.2
BraA07t30782Z Brassica rapa HOM05D009494 ORTHO05D011604 7.0e-07 57.4 111 33.3
Gohir.A12G177500 Gossypium hirsutum HOM05D007096 ORTHO05D008288 7.0e-07 57.4 88 42.0
C06p43330 Brassica napus HOM05D009494 ORTHO05D011604 9.2e-07 57.0 109 36.7
arahy.Tifrunner.gnm1.ann1.2U9IP4 Arachis hypogaea HOM05D007096 ORTHO05D008288 1.2e-06 56.6 90 41.1
CsaV3_1G005510 Cucumis sativus L. HOM05D007096 ORTHO05D008288 1.2e-06 56.6 91 40.7
BcaC08g45881 Brassica carinata HOM05D009494 ORTHO05D011604 1.6e-06 56.2 111 32.4
BolC6t38790H Brassica oleracea HOM05D009494 ORTHO05D011604 1.6e-06 56.2 111 32.4
Lsat_1_v5_gn_8_52521 Lactuca sativa HOM05D007096 ORTHO05D008288 1.6e-06 56.2 74 41.9
Lj2g0016871 Lotus japonicus HOM05D015099 ORTHO05D008288 1.6e-06 56.2 76 39.5
SGA_v2.0_scaffold302G47820 Striga asiatica HOM05D000180 ORTHO05D000099 2.0e-06 55.8 78 41.0
BcaB05g24463 Brassica carinata HOM05D009494 ORTHO05D011604 5.9e-06 54.3 118 33.1
Medtr5g040640 Medicago truncatula HOM05D015099 ORTHO05D008288 5.9e-06 54.3 110 35.5


User provided reference genes

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