Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G131500 Carya illinoinensis HOM05D003388 ORTHO05D003616 1.1e-275 952.6 474 100.0
CiPaw.05G132000 Carya illinoinensis HOM05D003388 ORTHO05D003616 4.4e-251 870.9 526 86.3
Haze_11983 Corylus avellana HOM05D003388 ORTHO05D003616 6.2e-221 770.8 526 75.3
Cfa008954 Carpinus fangiana HOM05D003388 ORTHO05D003616 4.2e-217 758.1 527 75.0
QL03p068106 Quercus lobata HOM05D003388 ORTHO05D003616 2.3e-199 699.1 524 69.8
CSS0011500 Camellia sinensis var. sinensis HOM05D003388 ORTHO05D003616 5.0e-186 654.8 526 64.6
Atru.chr11.1747 Acer truncatum HOM05D003388 ORTHO05D003616 5.5e-185 651.4 522 64.2
Sabra08G0066900 Salix brachista HOM05D003388 ORTHO05D003616 5.5e-185 651.4 528 64.6
Potri.008G089500 Populus trichocarpa HOM05D003388 ORTHO05D003616 1.5e-182 643.3 524 64.3
COL.COLO4_27999 Corchorus olitorius HOM05D003388 ORTHO05D003616 4.3e-182 641.7 527 63.4
Duzib251G0885 Durio zibethinus HOM05D003388 ORTHO05D003616 4.3e-182 641.7 528 62.3
Gorai.013G087800 Gossypium raimondii HOM05D003388 ORTHO05D003616 9.7e-182 640.6 525 62.5
Prupe.1G278000 Prunus persica HOM05D003388 ORTHO05D003616 1.3e-181 640.2 520 63.8
Gohir.D13G076800 Gossypium hirsutum HOM05D003388 ORTHO05D003616 1.6e-181 639.8 525 62.3
Duzib248G0503 Durio zibethinus HOM05D003388 ORTHO05D003616 2.2e-178 629.4 529 61.6
TAR629G0929 Trochodendron aralioides HOM05D003388 ORTHO05D003616 1.4e-177 626.7 526 61.6
RcHm_v2.0_Chr4g0439431 Rosa chinensis HOM05D003388 ORTHO05D003616 4.2e-177 625.2 524 61.6
Manes.01G034100 Manihot esculenta HOM05D003388 ORTHO05D003616 5.5e-177 624.8 522 62.3
Thecc.02G342400 Theobroma cacao HOM05D003388 ORTHO05D003616 5.5e-177 624.8 527 61.7
Ciclev10031048m.g Citrus clementina HOM05D003388 ORTHO05D003616 9.4e-177 624.0 522 62.5
Dinv34132 Davidia involucrata HOM05D003388 ORTHO05D003616 6.1e-176 621.3 509 63.5
Rhsim10G0115600 Rhododendron simsii HOM05D003388 ORTHO05D003616 2.0e-174 616.3 530 60.8
MD13G1069000 Malus domestica HOM05D003388 ORTHO05D003616 1.8e-172 609.8 526 60.5
TWI75G1739 Tripterygium wilfordii HOM05D003388 ORTHO05D003616 9.1e-172 607.4 529 58.4
CANSAT64G0380 Cannabis sativa HOM05D003388 ORTHO05D003616 2.0e-171 606.3 524 60.5
Lj3P1035T24 Lonicera japonica HOM05D003388 ORTHO05D003616 4.5e-171 605.1 527 58.8
FAN12G0832 Fragaria x ananassa HOM05D003388 ORTHO05D003616 2.0e-166 589.7 524 59.2
FvH4_4g31050 Fragaria vesca HOM05D003388 ORTHO05D003616 7.4e-166 587.8 524 59.0
ClCG05G024100 Citrullus lanatus HOM05D003388 ORTHO05D003616 1.4e-164 583.6 528 58.1
MELO3C012115.2 Cucumis melo HOM05D003388 ORTHO05D003616 1.4e-164 583.6 528 58.7
GSVIVG01012615001 Vitis vinifera HOM05D003388 ORTHO05D003616 1.4e-164 583.6 528 59.5
AUR62005822 Chenopodium quinoa HOM05D003388 ORTHO05D003616 1.8e-164 583.2 529 57.8
AUR62032817 Chenopodium quinoa HOM05D003388 ORTHO05D003616 5.3e-164 581.6 529 57.8
CsaV3_5G032950 Cucumis sativus L. HOM05D003388 ORTHO05D003616 1.7e-162 576.6 527 58.4
AL1G38950 Arabidopsis lyrata HOM05D003388 ORTHO05D003616 4.2e-161 572.0 528 56.2
MSTRG.7787 Avicennia marina HOM05D003388 ORTHO05D003616 1.6e-160 570.1 525 56.8
Ah.03g134820 Amaranthus hybridus HOM05D003388 ORTHO05D003616 1.4e-159 567.0 528 56.6
Actinidia33214 Actinidia chinensis HOM05D003388 ORTHO05D003616 2.3e-159 566.2 532 57.1
DCAR_007170 Daucus carota HOM05D003388 ORTHO05D003616 8.8e-159 564.3 528 53.2
EL10Ac6g13243 Beta vulgaris HOM05D003388 ORTHO05D003616 2.6e-158 562.8 531 56.3
Sp1g22050 Schrenkiella parvula HOM05D003388 ORTHO05D003616 3.3e-158 562.4 531 55.7
Eucgr.B03207 Eucalyptus grandis HOM05D003388 ORTHO05D003616 4.4e-158 562.0 530 56.2
Aqoxy3G03455 Aquilegia oxysepala HOM05D003388 ORTHO05D003616 7.5e-158 561.2 527 55.0
AT1G26760 Arabidopsis thaliana HOM05D003388 ORTHO05D003616 1.4e-156 557.0 526 55.1
Carub.0001s2426 Capsella rubella HOM05D003388 ORTHO05D003616 1.4e-156 557.0 532 55.1
Ca_18822_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 2.4e-156 556.2 529 55.0
Ca_30739_v3 Cicer arietinum L. HOM05D003388 ORTHO05D003616 2.4e-156 556.2 529 55.0
FAN22G1619 Fragaria x ananassa HOM05D003388 ORTHO05D003616 3.1e-156 555.8 504 58.1
Thhalv10007288m.g Eutrema salsugineum HOM05D003388 ORTHO05D003616 4.1e-156 555.4 531 56.1
Medtr4g082140 Medicago truncatula HOM05D003388 ORTHO05D003616 4.1e-156 555.4 528 55.7
Cc11_g12730 Coffea canephora HOM05D003388 ORTHO05D003616 5.3e-156 555.1 527 53.9
THA.LOC104803358 Tarenaya hassleriana HOM05D003388 ORTHO05D003616 9.1e-156 554.3 535 55.1
Lj4g0011095 Lotus japonicus HOM05D003388 ORTHO05D003616 1.2e-155 553.9 520 55.6
Sed0018691 Sechium edule HOM05D003388 ORTHO05D003616 1.2e-155 553.9 526 56.3
Sopen05g003620 Solanum pennellii HOM05D003388 ORTHO05D003616 1.2e-155 553.9 524 53.6
PGSC0003DMG400018436 Solanum tuberosum HOM05D003388 ORTHO05D003616 7.7e-155 551.2 527 53.3
CARHR025200 Cardamine hirsuta HOM05D003388 ORTHO05D003616 1.0e-154 550.8 529 54.8
Aa31LG7G8370 Aethionema arabicum HOM05D003388 ORTHO05D003616 2.2e-154 549.7 526 56.7
Lsat_1_v5_gn_8_50121 Lactuca sativa HOM05D003388 ORTHO05D003616 2.2e-154 549.7 522 55.2
HanXRQChr08g0210711 Helianthus annuus HOM05D003388 ORTHO05D003616 3.8e-154 548.9 524 54.4
Hma1.2p1_1079F.1_g254900 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 1.1e-153 547.4 521 57.4
BraA09t39515Z Brassica rapa HOM05D003388 ORTHO05D003616 5.5e-153 545.0 529 55.8
Nn3g17299 Nelumbo nucifera HOM05D003388 ORTHO05D003616 9.4e-153 544.3 528 54.0
A09p40170 Brassica napus HOM05D003388 ORTHO05D003616 1.2e-152 543.9 529 55.4
PGR102G2155 Punica granatum HOM05D003388 ORTHO05D003616 1.4e-151 540.4 526 54.8
C05p24210 Brassica napus HOM05D003388 ORTHO05D003616 1.8e-151 540.0 531 54.4
BolC5t31157H Brassica oleracea HOM05D003388 ORTHO05D003616 1.8e-151 540.0 531 54.4
Nitab4.5_0004300g0010 Nicotiana tabacum HOM05D003388 ORTHO05D003616 1.8e-151 540.0 525 52.6
Lalb_Chr09g0329211 Lupinus albus HOM05D003388 ORTHO05D003616 1.2e-150 537.3 521 54.5
Nitab4.5_0000040g0070 Nicotiana tabacum HOM05D003388 ORTHO05D003616 1.5e-150 537.0 525 52.2
Sc14g0008080 Simmondsia chinensis HOM05D003388 ORTHO05D003616 7.7e-147 524.6 519 53.8
BcaC05g26390 Brassica carinata HOM05D003388 ORTHO05D003616 1.2e-144 517.3 505 54.1
Migut.L01268 Erythranthe guttata HOM05D003388 ORTHO05D003616 1.2e-144 517.3 540 51.5
Phvul.002G170100 Phaseolus vulgaris HOM05D003388 ORTHO05D003616 1.6e-144 516.9 523 52.8
Psat7g160040 Pisum sativum HOM05D003388 ORTHO05D003616 2.8e-144 516.2 527 51.8
SalBow2G1725 Salvia bowleyana HOM05D003388 ORTHO05D003616 5.2e-143 511.9 521 50.9
VMungo0251G1426 Vigna mungo HOM05D003388 ORTHO05D003616 5.2e-143 511.9 523 52.8
SGA_v2.0_scaffold172G38951 Striga asiatica HOM05D004340 ORTHO05D006363 7.0e-140 501.5 527 49.7
CAN.G1335.17 Capsicum annuum HOM05D003388 ORTHO05D003616 3.5e-139 499.2 527 50.3
PSO832G1848 Papaver somniferum HOM05D003388 ORTHO05D003616 3.5e-139 499.2 533 50.1
Glyma.07G229200 Glycine max HOM05D003388 ORTHO05D003616 1.0e-138 497.7 525 52.0
PSO832G3938 Papaver somniferum HOM05D003388 ORTHO05D003616 6.8e-135 485.0 533 48.8
Peaxi162Scf00222g00073 Petunia axillaris HOM05D003388 ORTHO05D003616 1.5e-134 483.8 531 48.4
PSO013G0084 Papaver somniferum HOM05D003388 ORTHO05D003616 3.7e-133 479.2 533 48.8
unitig_747.g21182 Utricularia gibba HOM05D003388 ORTHO05D003616 7.8e-131 471.5 527 48.0
Cpa.g.sc1.49 Carica papaya HOM05D003388 ORTHO05D003616 5.6e-113 412.1 396 55.1
ECA233G4218 Erigeron canadensis HOM05D003388 ORTHO05D003616 4.7e-112 409.1 413 50.8
Solyc05g007760.2 Solanum lycopersicum HOM05D003388 ORTHO05D003616 6.8e-111 405.2 377 55.2
ATR0564G546 Amborella trichopoda HOM05D003388 ORTHO05D003616 2.9e-101 373.2 527 41.0
Actinidia12300 Actinidia chinensis HOM05D003388 ORTHO05D003616 1.2e-99 367.9 443 48.5
CDE07G1327 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 3.1e-95 353.2 510 41.4
CDE04G2617 Ceratophyllum demersum HOM05D003388 ORTHO05D003616 6.9e-95 352.1 462 41.8
Zm00001eb005310 Zea mays HOM05D003388 ORTHO05D003616 3.3e-89 333.2 538 36.6
Oeu005759.1 Olea europaea HOM05D003388 ORTHO05D003616 1.1e-87 328.2 280 58.9
Hma1.2p1_1079F.1_g254910 Hydrangea macrophylla HOM05D003388 ORTHO05D003616 6.9e-87 325.5 304 56.9
Os03g0168700 Oryza sativa ssp. japonica HOM05D003388 ORTHO05D003616 6.9e-87 325.5 536 37.1
TPR.G34080 Trifolium pratense HOM05D003388 ORTHO05D003616 2.0e-78 297.4 311 52.4
MBI13_g11342_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 4.9e-77 292.7 305 51.5
HPP92_007854 Vanilla planifolia HOM05D003388 ORTHO05D003616 6.3e-64 249.2 412 37.9
HanXRQChr08g0210721 Helianthus annuus HOM05D003388 ORTHO05D003616 9.1e-63 245.4 261 51.0
Manes.05G105000 Manihot esculenta HOM05D003388 ORTHO05D003616 3.6e-59 233.4 256 50.0
Cpa.g.sc207.13 Carica papaya HOM05D003388 ORTHO05D003616 5.3e-55 219.5 171 63.7
TPR.G30244 Trifolium pratense HOM05D003388 ORTHO05D003616 3.2e-52 210.3 194 55.2
Migut.N01400 Erythranthe guttata HOM05D003388 ORTHO05D003616 2.2e-45 187.6 158 58.2
FAN17G1342 Fragaria x ananassa HOM05D003388 ORTHO05D003616 6.1e-43 179.5 234 45.3
Gohir.A13G077601 Gossypium hirsutum HOM05D003388 ORTHO05D003616 2.6e-41 174.1 342 35.7
SEGI_40344 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.7e-35 154.1 372 29.6
Rhsim10G0051800 Rhododendron simsii HOM05D003388 ORTHO05D003616 1.8e-34 151.4 158 51.9
Sabra10G0126300 Salix brachista HOM05D003388 ORTHO05D003616 1.4e-31 141.7 101 67.3
Pp3c3_37320 Physcomitrium patens HOM05D003388 ORTHO05D003616 3.1e-31 140.6 455 25.3
SEGI_08014 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 7.0e-31 139.4 401 27.7
SEGI_01292 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 7.7e-30 136.0 404 27.0
FAN17G1125 Fragaria x ananassa HOM05D003388 ORTHO05D003616 4.2e-28 130.2 121 57.0
SEGI_26309 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 7.2e-28 129.4 353 28.0
vmacro07343 Vaccinium macrocarpon HOM05D000183 ORTHO05D003616 9.5e-28 129.0 421 28.0
SEGI_15178 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.2e-27 128.6 313 29.7
SEGI_33704 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.8e-26 124.8 300 29.3
AagrBONN_evm.TU.Sc2ySwM_362.802 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.0e-25 121.3 409 25.2
Migut.J00526 Erythranthe guttata HOM05D003388 ORTHO05D003616 2.0e-25 121.3 102 56.9
Mapoly0048s0091 Marchantia polymorpha HOM05D003388 ORTHO05D003616 5.7e-25 119.8 357 27.7
SEGI_00508 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.8e-24 117.5 351 26.8
SEGI_35950 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.8e-24 117.5 351 26.8
Pp3c2_8360 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.1e-23 115.5 347 28.5
AagrBONN_evm.TU.Sc2ySwM_362.800 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.4e-23 114.4 405 26.4
Pp3c17_14770 Physcomitrium patens HOM05D003388 ORTHO05D003616 4.1e-23 113.6 398 27.9
Mapoly0052s0121 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.6e-22 111.7 396 26.8
Pp3c1_34190 Physcomitrium patens HOM05D003388 ORTHO05D003616 1.6e-22 111.7 343 27.1
Pp3c16_17020 Physcomitrium patens HOM05D003388 ORTHO05D003616 4.5e-22 110.2 407 23.8
SMO203G0010 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 7.8e-22 109.4 396 24.5
MBI13_g11341_MAGBIO Magnolia biondii HOM05D003388 ORTHO05D003616 1.7e-21 108.2 103 54.4
AagrBONN_evm.TU.Sc2ySwM_368.1893 Anthoceros agrestis HOM05D003388 ORTHO05D003616 3.8e-21 107.1 425 23.8
Mapoly0033s0081 Marchantia polymorpha HOM05D003388 ORTHO05D003616 3.3e-20 104.0 408 25.0
Lalb_Chr05g0220281 Lupinus albus HOM05D003388 ORTHO05D003616 7.3e-20 102.8 168 39.9
SMO137G0302 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 7.3e-20 102.8 351 27.4
SEGI_24693 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 3.6e-19 100.5 408 24.5
SMO228G0086 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.3e-18 97.8 336 25.9
SMO361G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.2e-17 95.5 333 25.8
Mapoly0028s0125 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.5e-17 92.8 386 23.8
MCO03G599 Micromonas commoda HOM05D003388 ORTHO05D003616 6.4e-16 89.7 378 24.6
vmacro10858 Vaccinium macrocarpon HOM05D003388 ORTHO05D003616 6.4e-16 89.7 79 58.2
SMO276G0050 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.4e-15 86.7 335 26.0
Mapoly0045s0135 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.0e-15 86.3 418 21.3
AagrBONN_evm.TU.Sc2ySwM_362.1319 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.0e-14 84.7 407 22.1
AagrBONN_evm.TU.Sc2ySwM_228.5463 Anthoceros agrestis HOM05D003388 ORTHO05D003616 2.7e-14 84.3 374 23.3
Mapoly0063s0022 Marchantia polymorpha HOM05D003388 ORTHO05D003616 4.6e-14 83.6 343 25.4
Mapoly0087s0002 Marchantia polymorpha HOM05D003388 ORTHO05D003616 1.0e-13 82.4 406 22.9
SMO201G0158 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 2.3e-13 81.3 325 25.8
Oeu047605.1 Olea europaea HOM05D003388 ORTHO05D003616 6.6e-13 79.7 162 29.6
HanXRQChr08g0210731 Helianthus annuus HOM05D003388 ORTHO05D003616 2.5e-12 77.8 72 52.8
AagrBONN_evm.TU.Sc2ySwM_362.2583 Anthoceros agrestis HOM05D003388 ORTHO05D003616 5.6e-12 76.6 337 23.7
SMO171G0130 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 3.6e-11 73.9 334 22.5
Mapoly0045s0136 Marchantia polymorpha HOM05D003388 ORTHO05D003616 4.7e-11 73.6 415 22.2
SEGI_21064 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 6.2e-11 73.2 176 29.0
AagrBONN_evm.TU.Sc2ySwM_228.5461 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.8e-10 71.6 225 25.3
AagrBONN_evm.TU.Sc2ySwM_344.118 Anthoceros agrestis HOM05D003388 ORTHO05D003616 5.2e-10 70.1 226 25.7
SEGI_34640 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 5.2e-10 70.1 58 48.3
AagrBONN_evm.TU.Sc2ySwM_362.2588 Anthoceros agrestis HOM05D003388 ORTHO05D003616 1.2e-09 68.9 285 25.3
SMO196G0261 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 1.5e-09 68.6 349 26.1
AagrBONN_evm.TU.Sc2ySwM_228.695 Anthoceros agrestis HOM05D013582 ORTHO05D003616 4.4e-09 67.0 398 22.1
SEGI_16731 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 4.4e-09 67.0 206 27.2
Mapoly0058s0063 Marchantia polymorpha HOM05D003388 ORTHO05D003616 7.5e-09 66.2 259 24.3
SEGI_10886 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 2.2e-08 64.7 112 32.1
AagrBONN_evm.TU.Sc2ySwM_362.2541 Anthoceros agrestis HOM05D003388 ORTHO05D003616 6.4e-08 63.2 238 22.7
SMO364G0834 Selaginella moellendorffii HOM05D057791 ORTHO05D003616 1.9e-07 61.6 131 32.8
Pp3c11_18790 Physcomitrium patens HOM05D003388 ORTHO05D003616 2.4e-07 61.2 226 24.3
AagrBONN_evm.TU.Sc2ySwM_344.2568 Anthoceros agrestis HOM05D003388 ORTHO05D003616 5.4e-07 60.1 435 20.9
SMO246G0012 Selaginella moellendorffii HOM05D003388 ORTHO05D003616 5.4e-07 60.1 151 29.1
SEGI_01320 Sequoiadendron giganteum HOM05D003388 ORTHO05D003616 1.2e-06 58.9 120 31.7
SMO197G0008 Selaginella moellendorffii HOM05D057791 ORTHO05D003616 1.6e-06 58.5 111 34.2
Glyma.18G238550 Glycine max HOM05D003388 ORTHO05D003616 4.6e-06 57.0 57 47.4


User provided reference genes

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