Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G130500 Carya illinoinensis HOM05D005262 ORTHO05D006590 1.8e-102 375.9 188 100.0
QL03p069106 Quercus lobata HOM05D005262 ORTHO05D006590 2.7e-95 352.1 186 92.5
QL93p1999_0168 Quercus lobata HOM05D005262 ORTHO05D006590 2.7e-95 352.1 186 92.5
CSS0022308 Camellia sinensis var. sinensis HOM05D005262 ORTHO05D006590 3.2e-88 328.6 186 86.0
Cfa008943 Carpinus fangiana HOM05D005262 ORTHO05D006590 9.4e-88 327.0 186 85.5
Dinv34128 Davidia involucrata HOM05D005262 ORTHO05D006590 1.6e-87 326.2 186 86.6
ClCG00G005120 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.7e-87 324.7 188 83.5
ClCG05G024080 Citrullus lanatus HOM05D005262 ORTHO05D006590 4.7e-87 324.7 188 83.5
TWI23G0893 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 1.4e-86 323.2 186 83.3
Nitab4.5_0001147g0090 Nicotiana tabacum HOM05D005262 ORTHO05D006590 2.6e-85 318.9 186 83.9
Nitab4.5_0005903g0020 Nicotiana tabacum HOM05D005262 ORTHO05D006590 4.4e-85 318.2 186 84.4
GSVIVG01005152001 Vitis vinifera HOM05D005262 ORTHO05D006590 4.4e-85 318.2 186 84.4
Cpa.g.sc57.36 Carica papaya HOM05D005262 ORTHO05D006590 2.8e-84 315.5 185 82.2
TWI59G0657 Tripterygium wilfordii HOM05D005262 ORTHO05D006590 2.8e-84 315.5 186 81.7
Solyc07g017410.3 Solanum lycopersicum HOM05D005262 ORTHO05D006590 4.8e-84 314.7 186 83.9
Sopen07g006120 Solanum pennellii HOM05D005262 ORTHO05D006590 4.8e-84 314.7 186 83.9
PGSC0003DMG400009555 Solanum tuberosum HOM05D005262 ORTHO05D006590 4.8e-84 314.7 186 83.9
Oeu054855.1 Olea europaea HOM05D005262 ORTHO05D006590 1.1e-83 313.5 186 82.8
Sed0024226 Sechium edule HOM05D005262 ORTHO05D006590 1.8e-83 312.8 185 82.2
TAR496G0001 Trochodendron aralioides HOM05D005262 ORTHO05D006590 2.4e-83 312.4 185 81.6
TAR629G1254 Trochodendron aralioides HOM05D005262 ORTHO05D006590 2.4e-83 312.4 185 81.6
MD07G1136300 Malus domestica HOM05D005262 ORTHO05D006590 4.1e-83 311.6 186 80.6
GSVIVG01012217001 Vitis vinifera HOM05D005262 ORTHO05D006590 5.3e-83 311.2 186 81.7
Hma1.2p1_1954F.1_g308920 Hydrangea macrophylla HOM05D005262 ORTHO05D006590 2.0e-82 309.3 205 76.1
Lj8C474T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.0e-82 309.3 184 82.6
Lj7A251G27 Lonicera japonica HOM05D005262 ORTHO05D006590 4.5e-82 308.1 184 82.1
MD01G1063000 Malus domestica HOM05D005262 ORTHO05D006590 4.5e-82 308.1 186 80.1
Sc04g0007950 Simmondsia chinensis HOM05D005262 ORTHO05D006590 4.5e-82 308.1 186 79.6
CAN.G293.9 Capsicum annuum HOM05D005262 ORTHO05D006590 1.0e-81 307.0 186 80.6
MELO3C012117.2 Cucumis melo HOM05D005262 ORTHO05D006590 2.2e-81 305.8 188 79.8
Rhsim09G0138500 Rhododendron simsii HOM05D005262 ORTHO05D006590 3.8e-81 305.1 185 81.6
Prupe.2G171300 Prunus persica HOM05D005262 ORTHO05D006590 5.0e-81 304.7 185 80.5
Thecc.10G075900 Theobroma cacao HOM05D005262 ORTHO05D006590 6.5e-81 304.3 185 81.6
Duzib114G0995 Durio zibethinus HOM05D005262 ORTHO05D006590 8.5e-81 303.9 181 82.3
Atru.chr11.1609 Acer truncatum HOM05D005262 ORTHO05D006590 1.1e-80 303.5 185 77.3
TAR365G0711 Trochodendron aralioides HOM05D005262 ORTHO05D006590 1.1e-80 303.5 190 79.5
CsaV3_5G032960 Cucumis sativus L. HOM05D005262 ORTHO05D006590 9.4e-80 300.4 186 78.5
Lj8C444T0 Lonicera japonica HOM05D005262 ORTHO05D006590 2.1e-79 299.3 206 74.3
Lj7C254T2 Lonicera japonica HOM05D005262 ORTHO05D006590 3.6e-79 298.5 185 79.5
Peaxi162Scf00320g00123 Petunia axillaris HOM05D005262 ORTHO05D006590 4.0e-78 295.0 201 75.1
QL07p005102 Quercus lobata HOM05D005262 ORTHO05D006590 8.8e-78 293.9 154 92.9
HanXRQChr15g0476911 Helianthus annuus HOM05D005262 ORTHO05D006590 2.0e-77 292.7 184 77.2
PGR102G3250 Punica granatum HOM05D005262 ORTHO05D006590 2.6e-77 292.4 185 76.8
PSO063G7616 Papaver somniferum HOM05D005262 ORTHO05D006590 9.7e-77 290.4 186 76.9
Aqoxy2G00811 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 1.3e-76 290.0 189 74.1
Gohir.D04G003700 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.8e-76 288.9 186 78.5
Gorai.012G004900 Gossypium raimondii HOM05D005262 ORTHO05D006590 2.8e-76 288.9 186 78.5
FAN26G2856 Fragaria x ananassa HOM05D005262 ORTHO05D006590 3.7e-76 288.5 187 74.3
MSTRG.11557 Avicennia marina HOM05D005262 ORTHO05D006590 4.8e-76 288.1 187 74.9
Cc00_g16620 Coffea canephora HOM05D005262 ORTHO05D006590 4.8e-76 288.1 186 73.1
FAN23G1362 Fragaria x ananassa HOM05D005262 ORTHO05D006590 4.8e-76 288.1 187 75.4
PSO832G0345 Papaver somniferum HOM05D005262 ORTHO05D006590 6.3e-76 287.7 186 75.8
SGA_v2.0_scaffold25G10746 Striga asiatica HOM05D005262 ORTHO05D006590 6.3e-76 287.7 187 73.8
Aqoxy1G02417 Aquilegia oxysepala HOM05D005262 ORTHO05D006590 8.2e-76 287.3 186 74.7
HPP92_008614 Vanilla planifolia HOM05D005262 ORTHO05D006590 1.4e-75 286.6 186 73.7
CANSAT80G0446 Cannabis sativa HOM05D005262 ORTHO05D006590 1.8e-75 286.2 176 78.4
Ciclev10032849m.g Citrus clementina HOM05D005262 ORTHO05D006590 1.8e-75 286.2 186 74.7
FAN19G1549 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.4e-75 285.8 187 74.3
Gohir.A05G412300 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.1e-75 285.4 185 78.4
Potri.010G165500 Populus trichocarpa HOM05D005262 ORTHO05D006590 4.1e-75 285.0 184 75.5
Migut.O00263 Erythranthe guttata HOM05D005262 ORTHO05D006590 1.2e-74 283.5 182 75.8
Gohir.A10G054500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 2.7e-74 282.3 185 77.8
Lj6g0009238 Lotus japonicus HOM05D005262 ORTHO05D006590 2.7e-74 282.3 186 73.7
FvH4_1g30250 Fragaria vesca HOM05D005262 ORTHO05D006590 4.5e-74 281.6 187 73.3
SGA_v2.0_scaffold90G27753 Striga asiatica HOM05D005262 ORTHO05D006590 5.9e-74 281.2 187 72.7
Os12g0209100 Oryza sativa ssp. japonica HOM05D005262 ORTHO05D006590 7.7e-74 280.8 182 72.5
HanXRQChr17g0545311 Helianthus annuus HOM05D005262 ORTHO05D006590 1.0e-73 280.4 184 74.5
DCAR_013139 Daucus carota HOM05D005262 ORTHO05D006590 1.3e-73 280.0 186 72.0
ECA246G3166 Erigeron canadensis HOM05D006399 ORTHO05D007988 1.3e-73 280.0 186 72.0
Lj2g0009005 Lotus japonicus HOM05D005262 ORTHO05D006590 1.3e-73 280.0 186 73.7
AUR62032822 Chenopodium quinoa HOM05D005262 ORTHO05D006590 1.7e-73 279.6 185 73.5
Glyma.01G052200 Glycine max HOM05D005262 ORTHO05D006590 2.2e-73 279.3 182 74.7
Gorai.011G060300 Gossypium raimondii HOM05D005262 ORTHO05D006590 6.5e-73 277.7 185 75.7
Ca_02973_v3 Cicer arietinum L. HOM05D005262 ORTHO05D006590 1.9e-72 276.2 186 74.7
Glyma.02G110400 Glycine max HOM05D005262 ORTHO05D006590 9.4e-72 273.9 182 73.1
VMungo1215G2947 Vigna mungo HOM05D005262 ORTHO05D006590 1.2e-71 273.5 188 70.7
Manes.01G033800 Manihot esculenta HOM05D005262 ORTHO05D006590 1.6e-71 273.1 190 70.0
Psat1g094200 Pisum sativum HOM05D005262 ORTHO05D006590 3.6e-71 271.9 188 73.4
Sabra10G0125800 Salix brachista HOM05D005262 ORTHO05D006590 8.0e-71 270.8 208 66.8
Haze_11969 Corylus avellana HOM05D001063 ORTHO05D000986 1.8e-70 269.6 154 84.4
Hund04408 Selenicereus undatus HOM05D005262 ORTHO05D006590 1.8e-70 269.6 271 55.0
EL10Ac8g18975 Beta vulgaris HOM05D005262 ORTHO05D006590 3.0e-70 268.9 183 71.0
TPR.G4647 Trifolium pratense HOM05D005262 ORTHO05D006590 4.0e-70 268.5 186 71.0
Lalb_Chr12g0202851 Lupinus albus HOM05D005262 ORTHO05D006590 6.8e-70 267.7 183 70.5
Phvul.003G046600 Phaseolus vulgaris HOM05D005262 ORTHO05D006590 6.8e-70 267.7 185 73.0
Lsat_1_v5_gn_3_51960 Lactuca sativa HOM05D005262 ORTHO05D006590 1.2e-69 266.9 179 70.9
Nn4g23238 Nelumbo nucifera HOM05D005262 ORTHO05D006590 3.4e-69 265.4 152 83.6
COL.COLO4_28415 Corchorus olitorius HOM05D005262 ORTHO05D006590 9.8e-69 263.8 178 72.5
Zm00001eb163570 Zea mays HOM05D005262 ORTHO05D006590 2.8e-68 262.3 185 68.6
arahy.Tifrunner.gnm1.ann1.EK09V6 Arachis hypogaea HOM05D005262 ORTHO05D006590 3.7e-68 261.9 197 67.0
arahy.Tifrunner.gnm1.ann1.XG4VM3 Arachis hypogaea HOM05D005262 ORTHO05D006590 6.3e-68 261.2 197 66.5
ATR0810G029 Amborella trichopoda HOM05D005262 ORTHO05D006590 1.2e-66 256.9 178 69.7
Medtr8g006800 Medicago truncatula HOM05D005262 ORTHO05D006590 3.5e-66 255.4 185 69.2
Medtr2g087760 Medicago truncatula HOM05D005262 ORTHO05D006590 4.5e-66 255.0 174 71.8
unitig_749.g14151 Utricularia gibba HOM05D005262 ORTHO05D006590 4.5e-66 255.0 182 65.9
CDE02G1435 Ceratophyllum demersum HOM05D005262 ORTHO05D006590 1.1e-64 250.4 188 67.6
Eucgr.I00218 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.8e-63 245.7 160 74.4
SalBow6G1526 Salvia bowleyana HOM05D005262 ORTHO05D006590 4.7e-63 245.0 182 64.3
SEGI_18406 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 4.9e-60 235.0 178 62.9
AUR62005827 Chenopodium quinoa HOM05D006399 ORTHO05D007988 2.4e-59 232.6 191 61.3
THA.LOC104818198 Tarenaya hassleriana HOM05D005262 ORTHO05D006590 1.6e-58 229.9 186 58.1
vmacro10351 Vaccinium macrocarpon HOM05D005262 ORTHO05D006590 1.9e-56 223.0 185 65.4
Aa31LG7G8380 Aethionema arabicum HOM05D005262 ORTHO05D006590 1.8e-54 216.5 185 55.7
CAN.G228.3 Capsicum annuum HOM05D005262 ORTHO05D006590 2.2e-52 209.5 207 56.5
CARHR025210 Cardamine hirsuta HOM05D005262 ORTHO05D006590 2.9e-52 209.1 182 54.4
Carub.0001s2427 Capsella rubella HOM05D005262 ORTHO05D006590 2.4e-51 206.1 185 53.0
AL1G38960 Arabidopsis lyrata HOM05D005262 ORTHO05D006590 5.4e-51 204.9 185 53.5
Thhalv10008835m.g Eutrema salsugineum HOM05D005262 ORTHO05D006590 9.2e-51 204.1 182 54.4
Sp1g22060 Schrenkiella parvula HOM05D005262 ORTHO05D006590 1.0e-49 200.7 185 53.0
AT1G26750 Arabidopsis thaliana HOM05D005262 ORTHO05D006590 5.0e-49 198.4 185 52.4
RcHm_v2.0_Chr6g0271051 Rosa chinensis HOM05D005262 ORTHO05D006590 6.6e-49 198.0 172 62.8
A07p13080 Brassica napus HOM05D005262 ORTHO05D006590 1.1e-46 190.7 182 51.6
BraA07t29079Z Brassica rapa HOM05D005262 ORTHO05D006590 5.2e-46 188.3 182 51.6
BcaC06g35126 Brassica carinata HOM05D005262 ORTHO05D006590 7.5e-45 184.5 182 50.5
BcaB03g14087 Brassica carinata HOM05D005262 ORTHO05D006590 2.2e-44 183.0 182 50.0
C07p19560 Brassica napus HOM05D005262 ORTHO05D006590 2.2e-44 183.0 182 50.0
BolC7t42473H Brassica oleracea HOM05D005262 ORTHO05D006590 2.2e-44 183.0 182 50.0
Eucgr.L00661 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.2e-44 183.0 114 81.6
C05p24220 Brassica napus HOM05D005262 ORTHO05D006590 4.1e-43 178.7 182 48.9
A09p40160 Brassica napus HOM05D005262 ORTHO05D006590 3.5e-42 175.6 182 47.8
BraA09t39514Z Brassica rapa HOM05D005262 ORTHO05D006590 3.5e-42 175.6 182 47.8
Gohir.D10G056500 Gossypium hirsutum HOM05D005262 ORTHO05D006590 3.6e-39 165.6 155 60.6
BolC5t31158H Brassica oleracea HOM05D005262 ORTHO05D006590 8.1e-39 164.5 148 54.7
ClCG08G001930 Citrullus lanatus HOM05D005262 ORTHO05D006590 1.2e-37 160.6 114 70.2
BcaC05g26391 Brassica carinata HOM05D005262 ORTHO05D006590 3.0e-33 146.0 180 44.4
Haze_01349 Corylus avellana HOM05D005262 ORTHO05D006590 1.7e-28 130.2 102 66.7
Oeu021067.1 Olea europaea HOM05D005262 ORTHO05D006590 3.8e-28 129.0 78 78.2
RcHm_v2.0_Chr7g0220341 Rosa chinensis HOM05D005262 ORTHO05D006590 1.9e-27 126.7 85 70.6
Lj3C1034G10 Lonicera japonica HOM05D006399 ORTHO05D007988 7.8e-26 121.3 79 74.7
SEGI_29332 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.5e-24 117.1 87 63.2
Glyma.11G251200 Glycine max HOM05D005262 ORTHO05D006590 9.6e-24 114.4 73 71.2
SEGI_36558 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 5.8e-21 105.1 76 63.2
SEGI_23137 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 9.9e-21 104.4 81 61.7
SEGI_39727 Sequoiadendron giganteum HOM05D005262 ORTHO05D006590 1.7e-20 103.6 76 61.8
Pp3c14_7320 Physcomitrium patens HOM05D005262 ORTHO05D006590 8.4e-20 101.3 155 38.7
AagrBONN_evm.TU.Sc2ySwM_228.1458 Anthoceros agrestis HOM05D005262 ORTHO05D006590 1.1e-19 100.9 151 40.4
RcHm_v2.0_Chr7g0220351 Rosa chinensis HOM05D005262 ORTHO05D006590 1.1e-19 100.9 61 80.3
CBR_g30169 Chara braunii HOM05D005262 ORTHO05D006590 1.3e-17 94.0 159 34.0
Mapoly0001s0053 Marchantia polymorpha HOM05D005262 ORTHO05D006590 3.9e-17 92.4 119 40.3
SHI20784 Sapria himalayana HOM05D005262 ORTHO05D006590 6.6e-17 91.7 97 51.5
Eucgr.L00657 Eucalyptus grandis HOM05D005262 ORTHO05D006590 2.6e-13 79.7 90 55.6
FAN15G0396 Fragaria x ananassa HOM05D005262 ORTHO05D006590 2.6e-13 79.7 66 63.6
Zm00001eb076020 Zea mays HOM05D005262 ORTHO05D444176 3.7e-07 59.3 45 60.0


User provided reference genes

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