Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G124500 Carya illinoinensis HOM05D005523 ORTHO05D007089 0.0e+00 1378.2 688 100.0
QL03p074443 Quercus lobata HOM05D005523 ORTHO05D007089 1.8e-309 1065.4 693 78.4
QL03p074024 Quercus lobata HOM05D005523 ORTHO05D007089 7.4e-308 1060.1 693 77.9
Cfa008872 Carpinus fangiana HOM05D005523 ORTHO05D007089 2.9e-288 995.0 652 77.1
Haze_11899 Corylus avellana HOM05D005523 ORTHO05D007089 8.6e-280 966.8 646 75.7
MD13G1061700 Malus domestica HOM05D005523 ORTHO05D007089 4.0e-253 878.2 692 66.6
Prupe.1G288300 Prunus persica HOM05D005523 ORTHO05D007089 2.0e-252 875.9 686 67.3
Thecc.02G329500 Theobroma cacao HOM05D005523 ORTHO05D007089 3.4e-252 875.2 687 66.4
Potri.010G157700 Populus trichocarpa HOM05D005523 ORTHO05D007089 4.4e-252 874.8 683 66.8
GSVIVG01012228001 Vitis vinifera HOM05D005523 ORTHO05D007089 9.9e-252 873.6 688 66.0
CANSAT64G1787 Cannabis sativa HOM05D005523 ORTHO05D007089 4.1e-250 868.2 691 64.8
Ciclev10033727m.g Citrus clementina HOM05D005523 ORTHO05D007089 4.1e-250 868.2 684 66.2
MD16G1060200 Malus domestica HOM05D005523 ORTHO05D007089 1.2e-249 866.7 684 66.8
Glyma.20G025400 Glycine max HOM05D005523 ORTHO05D007089 2.5e-247 859.0 685 64.5
RcHm_v2.0_Chr4g0438141 Rosa chinensis HOM05D005523 ORTHO05D007089 2.1e-246 855.9 683 66.8
COL.COLO4_27873 Corchorus olitorius HOM05D005523 ORTHO05D007089 1.8e-245 852.8 688 65.6
TWI79G0260 Tripterygium wilfordii HOM05D005523 ORTHO05D007089 7.6e-244 847.4 690 63.9
Lalb_Chr05g0219911 Lupinus albus HOM05D005523 ORTHO05D007089 6.0e-241 837.8 681 64.0
FAN22G0589 Fragaria x ananassa HOM05D005523 ORTHO05D007089 7.8e-241 837.4 683 64.9
FAN07G2138 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.0e-240 837.0 683 64.9
FvH4_4g29880 Fragaria vesca HOM05D005523 ORTHO05D007089 2.3e-240 835.9 682 64.7
CsaV3_5G033360 Cucumis sativus L. HOM05D005523 ORTHO05D007089 3.3e-239 832.0 688 62.5
Atru.chr11.1618 Acer truncatum HOM05D005523 ORTHO05D007089 2.1e-238 829.3 680 64.7
Phvul.002G101900 Phaseolus vulgaris HOM05D005523 ORTHO05D007089 3.6e-238 828.6 686 63.6
FAN17G1793 Fragaria x ananassa HOM05D005523 ORTHO05D007089 6.2e-238 827.8 705 62.7
MELO3C012156.2 Cucumis melo HOM05D005523 ORTHO05D007089 1.1e-237 827.0 690 62.6
Rhsim02G0238300 Rhododendron simsii HOM05D005523 ORTHO05D007089 4.0e-237 825.1 727 60.8
Gorai.008G176600 Gossypium raimondii HOM05D005523 ORTHO05D007089 9.0e-237 823.9 688 62.9
Psat7g133840 Pisum sativum HOM05D005523 ORTHO05D007089 2.9e-235 818.9 688 62.8
Gohir.D12G164000 Gossypium hirsutum HOM05D005523 ORTHO05D007089 4.9e-235 818.1 688 62.6
Medtr4g083180 Medicago truncatula HOM05D005523 ORTHO05D007089 4.9e-235 818.1 685 63.4
Lj4g0005251 Lotus japonicus HOM05D005523 ORTHO05D007089 6.4e-235 817.8 688 63.5
Duzib251G0966 Durio zibethinus HOM05D005523 ORTHO05D007089 8.4e-235 817.4 687 63.6
Sed0024899 Sechium edule HOM05D005523 ORTHO05D007089 8.4e-235 817.4 696 61.8
FAN12G2921 Fragaria x ananassa HOM05D005523 ORTHO05D007089 1.4e-234 816.6 719 61.5
Nn4g23450 Nelumbo nucifera HOM05D005523 ORTHO05D007089 1.7e-232 809.7 724 60.2
Solyc05g012200.3 Solanum lycopersicum HOM05D005523 ORTHO05D007089 3.3e-231 805.4 684 62.3
Peaxi162Scf00175g00035 Petunia axillaris HOM05D005523 ORTHO05D007089 1.6e-230 803.1 683 61.9
PGSC0003DMG400028314 Solanum tuberosum HOM05D005523 ORTHO05D007089 8.1e-230 800.8 684 61.5
arahy.Tifrunner.gnm1.ann1.5T11RT Arachis hypogaea HOM05D005523 ORTHO05D007089 2.4e-229 799.3 698 61.7
TPR.G34024 Trifolium pratense HOM05D005523 ORTHO05D007089 3.4e-228 795.4 685 62.3
arahy.Tifrunner.gnm1.ann1.1A68HA Arachis hypogaea HOM05D005523 ORTHO05D007089 2.4e-226 789.3 689 62.0
Ca_18798_v3 Cicer arietinum L. HOM05D005523 ORTHO05D007089 7.1e-226 787.7 676 62.0
CAN.G707.6 Capsicum annuum HOM05D005523 ORTHO05D007089 1.9e-223 779.6 685 60.9
Nitab4.5_0007061g0020 Nicotiana tabacum HOM05D005523 ORTHO05D007089 1.9e-223 779.6 684 60.2
BolC7t43916H Brassica oleracea HOM05D005523 ORTHO05D007089 3.7e-222 775.4 683 60.5
Cc11_g11910 Coffea canephora HOM05D005523 ORTHO05D007089 2.4e-221 772.7 689 60.5
Sp2g14490 Schrenkiella parvula HOM05D005523 ORTHO05D007089 2.4e-221 772.7 684 59.1
Aqoxy3G00520 Aquilegia oxysepala HOM05D005523 ORTHO05D007089 3.1e-221 772.3 713 58.8
Thhalv10003838m.g Eutrema salsugineum HOM05D005523 ORTHO05D007089 4.0e-221 771.9 685 59.4
C07p34020 Brassica napus HOM05D005523 ORTHO05D007089 6.9e-221 771.2 683 59.7
EL10Ac6g15006 Beta vulgaris HOM05D005523 ORTHO05D007089 3.4e-220 768.8 686 58.3
vmacro10430 Vaccinium macrocarpon HOM05D005523 ORTHO05D007089 3.4e-220 768.8 697 59.1
AL5G13440 Arabidopsis lyrata HOM05D005523 ORTHO05D007089 5.8e-220 768.1 688 58.9
Lj6A778G61 Lonicera japonica HOM05D005523 ORTHO05D007089 9.9e-220 767.3 756 56.2
THA.LOC104805203 Tarenaya hassleriana HOM05D005523 ORTHO05D007089 1.7e-219 766.5 684 59.1
SalBow2G2481 Salvia bowleyana HOM05D005523 ORTHO05D007089 2.2e-219 766.1 706 58.2
Migut.L01183 Erythranthe guttata HOM05D005523 ORTHO05D007089 8.4e-219 764.2 689 58.1
Carub.0005s0279 Capsella rubella HOM05D005523 ORTHO05D007089 1.1e-218 763.8 686 59.3
CARHR145990 Cardamine hirsuta HOM05D005523 ORTHO05D007089 4.2e-218 761.9 686 58.0
Manes.05G109800 Manihot esculenta HOM05D005523 ORTHO05D007089 4.2e-218 761.9 654 61.9
PSO478G5042 Papaver somniferum HOM05D005523 ORTHO05D007089 2.7e-217 759.2 685 58.8
Sopen05g007030 Solanum pennellii HOM05D005523 ORTHO05D007089 2.7e-217 759.2 565 68.0
A06p43010 Brassica napus HOM05D005523 ORTHO05D007089 4.6e-217 758.4 686 59.0
AUR62003091 Chenopodium quinoa HOM05D005523 ORTHO05D007089 3.3e-215 752.3 652 59.2
AT2G03667 Arabidopsis thaliana HOM05D005523 ORTHO05D007089 2.1e-214 749.6 686 57.6
PSO017G3752 Papaver somniferum HOM05D005523 ORTHO05D007089 1.4e-213 746.9 690 57.7
Rhsim09G0126700 Rhododendron simsii HOM05D005523 ORTHO05D007089 1.4e-213 746.9 691 58.6
ECA234G2689 Erigeron canadensis HOM05D005523 ORTHO05D007089 4.0e-213 745.3 678 59.7
Aa31LG2G7010 Aethionema arabicum HOM05D005523 ORTHO05D007089 1.3e-211 740.3 666 58.1
HanXRQChr17g0552771 Helianthus annuus HOM05D005523 ORTHO05D007089 3.8e-211 738.8 685 59.0
Lsat_1_v5_gn_4_11761 Lactuca sativa HOM05D005523 ORTHO05D007089 9.3e-210 734.2 685 58.4
Hund25171 Selenicereus undatus HOM05D005523 ORTHO05D007089 3.5e-209 732.3 681 57.0
DCAR_026677 Daucus carota HOM05D005523 ORTHO05D007089 1.8e-208 729.9 650 60.8
Oeu021803.1 Olea europaea HOM05D005523 ORTHO05D007089 9.0e-205 717.6 651 58.5
PGR119G1690 Punica granatum HOM05D005523 ORTHO05D007089 1.5e-204 716.8 681 58.1
Sc14g0007970 Simmondsia chinensis HOM05D005523 ORTHO05D007089 2.9e-203 712.6 634 59.5
Nitab4.5_0000231g0170 Nicotiana tabacum HOM05D005523 ORTHO05D007089 6.5e-203 711.4 686 58.2
BcaB07g30661 Brassica carinata HOM05D005523 ORTHO05D007089 1.2e-201 707.2 700 55.0
Cc03_g11190 Coffea canephora HOM05D005523 ORTHO05D007089 8.8e-200 701.0 548 65.0
AUR62007908 Chenopodium quinoa HOM05D005523 ORTHO05D007089 7.7e-196 688.0 648 55.4
HPP92_001825 Vanilla planifolia HOM05D005523 ORTHO05D007089 3.7e-190 669.1 693 54.1
SGA_v2.0_scaffold16G07795 Striga asiatica HOM05D005523 ORTHO05D007089 1.3e-187 660.6 686 51.7
CSS0034602 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 1.0e-171 607.8 421 71.7
unitig_26.g10286 Utricularia gibba HOM05D005523 ORTHO05D007089 2.2e-166 590.1 689 49.6
TAR374G1461 Trochodendron aralioides HOM05D005523 ORTHO05D007089 5.9e-164 582.0 448 67.9
Zm00001eb029510 Zea mays HOM05D005523 ORTHO05D007089 2.3e-163 580.1 561 55.1
Eucgr.G02442 Eucalyptus grandis HOM05D005523 ORTHO05D007089 8.6e-163 578.2 439 66.7
Pp3c13_5080 Physcomitrium patens HOM05D005523 ORTHO05D007089 1.4e-160 570.9 703 46.5
Gohir.A12G160700 Gossypium hirsutum HOM05D005523 ORTHO05D007089 8.9e-152 541.6 393 69.2
AagrBONN_evm.TU.Sc2ySwM_228.676 Anthoceros agrestis HOM05D005523 ORTHO05D007089 5.4e-149 532.3 720 45.6
SMO364G0955 Selaginella moellendorffii HOM05D005523 ORTHO05D007089 3.9e-147 526.2 656 46.5
MBI19_g25293_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.5e-138 496.9 645 46.4
VMungo0251G0731 Vigna mungo HOM05D005523 ORTHO05D007089 9.5e-130 468.4 292 78.8
Oeu021804.1 Olea europaea HOM05D005523 ORTHO05D007089 6.2e-129 465.7 494 52.4
Mapoly0013s0146 Marchantia polymorpha HOM05D005523 ORTHO05D007089 1.1e-128 464.9 505 49.1
Actinidia28650 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.6e-122 441.8 469 54.2
ClCG05G023660 Citrullus lanatus HOM05D005523 ORTHO05D007089 5.8e-119 432.6 470 51.1
ATR0177G042 Amborella trichopoda HOM05D005523 ORTHO05D007089 1.3e-99 368.2 566 42.8
Actinidia36738 Actinidia chinensis HOM05D005523 ORTHO05D007089 2.3e-99 367.5 261 73.2
VMungo0251G1186 Vigna mungo HOM05D005523 ORTHO05D007089 1.1e-96 358.6 413 49.2
CDE10G0904 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 9.0e-96 355.5 263 70.3
BcaC04g21469 Brassica carinata HOM05D000070 ORTHO05D006344 4.3e-90 336.7 358 53.9
MBI19_g44450_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 2.2e-89 334.3 265 67.9
BcaC06g31164 Brassica carinata HOM05D005523 ORTHO05D006344 5.9e-87 326.2 197 78.7
PRCOL_00003408 Prasinoderma coloniale HOM05D005523 ORTHO05D007089 8.5e-86 322.4 573 36.3
CBR_g50115 Chara braunii HOM05D005523 ORTHO05D007089 5.1e-83 313.2 450 39.6
Actinidia12916 Actinidia chinensis HOM05D005523 ORTHO05D007089 1.5e-82 311.6 666 36.3
Actinidia14169 Actinidia chinensis HOM05D005523 ORTHO05D007089 9.7e-82 308.9 187 79.1
BolC9t56002H Brassica oleracea HOM05D005523 ORTHO05D007089 4.2e-77 293.5 354 48.6
RcHm_v2.0_Chr7g0182531 Rosa chinensis HOM05D005523 ORTHO05D007089 4.2e-77 293.5 174 83.3
C09p31430 Brassica napus HOM05D000070 ORTHO05D006344 2.1e-76 291.2 354 48.6
Lsat_1_v5_gn_7_112061 Lactuca sativa HOM05D005523 ORTHO05D007089 8.2e-73 279.3 312 53.8
Lsat_1_v5_gn_5_143020 Lactuca sativa HOM05D005523 ORTHO05D007089 5.9e-71 273.1 183 72.1
Lsat_1_v5_gn_5_70240 Lactuca sativa HOM05D005523 ORTHO05D007089 1.3e-70 271.9 187 73.8
Cpa.g.sc1.132 Carica papaya HOM05D005523 ORTHO05D007089 9.4e-69 265.8 468 40.0
Cpa.g.sc1.134 Carica papaya HOM05D005523 ORTHO05D007089 4.4e-66 256.9 150 77.3
Cre07.g321050 Chlamydomonas reinhardtii HOM05D005523 ORTHO05D007089 6.3e-65 253.1 363 39.7
CDE10G0400 Ceratophyllum demersum HOM05D005523 ORTHO05D007089 1.0e-59 235.7 361 41.0
BcaB03g12091 Brassica carinata HOM05D005523 ORTHO05D007089 1.4e-51 208.8 130 75.4
TAR374G1311 Trochodendron aralioides HOM05D005523 ORTHO05D007089 1.4e-48 198.7 211 52.1
CSS0024141 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.8e-42 176.0 231 43.7
CSS0004547 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 3.7e-33 147.5 244 39.8
CSS0023178 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D007089 9.5e-29 132.9 131 51.1
Os12g0574900 Oryza sativa ssp. japonica HOM05D005523 ORTHO05D007089 1.2e-28 132.5 243 35.8
Lsat_1_v5_gn_7_82480 Lactuca sativa HOM05D005523 ORTHO05D007089 4.1e-24 117.5 151 51.0
CiPaw.04G124200 Carya illinoinensis HOM05D005523 ORTHO05D007089 9.2e-24 116.3 72 79.2
SEGI_10872 Sequoiadendron giganteum HOM05D005523 ORTHO05D007089 1.0e-22 112.8 98 51.0
EL10Ac6g15009 Beta vulgaris HOM05D005523 ORTHO05D007089 2.3e-22 111.7 229 31.0
CSS0028074 Camellia sinensis var. sinensis HOM05D005523 ORTHO05D026295 4.3e-21 107.5 131 44.3
HanXRQChr15g0470871 Helianthus annuus HOM05D005523 ORTHO05D007089 8.3e-17 93.2 77 54.5
CAN.G553.8 Capsicum annuum HOM05D001766 ORTHO05D043404 1.2e-15 89.4 86 53.5
MBI19_g26864_MAGBIO Magnolia biondii HOM05D005523 ORTHO05D007089 6.6e-14 83.6 200 36.0
Cpa.g.sc1.135 Carica papaya HOM05D005523 ORTHO05D007089 8.6e-14 83.2 53 81.1
CAN.G602.9 Capsicum annuum HOM05D005523 ORTHO05D007089 4.4e-10 70.9 56 62.5
HanXRQChr16g0520621 Helianthus annuus HOM05D005523 ORTHO05D007089 1.7e-06 58.9 44 56.8
SEGI_20523 Sequoiadendron giganteum HOM05D005523 ORTHO05D000001 8.7e-06 56.6 69 39.1


User provided reference genes

Program Settings