Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G123100 Carya illinoinensis HOM05D007776 ORTHO05D009812 1.4e-63 246.1 122 100.0
CiPaw.07G236300 Carya illinoinensis HOM05D007776 ORTHO05D009812 7.5e-62 240.4 122 97.5
Haze_21304 Corylus avellana HOM05D007776 ORTHO05D009812 4.3e-41 171.4 128 71.9
Cfa012949 Carpinus fangiana HOM05D007776 ORTHO05D009812 2.1e-40 169.1 128 72.7
CANSAT25G0596 Cannabis sativa HOM05D007776 ORTHO05D009812 2.9e-29 132.1 117 64.1
MD15G1406800 Malus domestica HOM05D007776 ORTHO05D009812 1.7e-26 122.9 120 59.2
TWI59G0674 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 2.3e-26 122.5 107 63.6
TWI14G0313 Tripterygium wilfordii HOM05D007776 ORTHO05D009812 1.9e-25 119.4 124 56.5
Prupe.1G555000 Prunus persica HOM05D007776 ORTHO05D009812 3.3e-25 118.6 107 62.6
Manes.02G198100 Manihot esculenta HOM05D007776 ORTHO05D009812 7.3e-25 117.5 126 57.1
FAN04G1877 Fragaria x ananassa HOM05D007776 ORTHO05D009812 9.6e-25 117.1 132 55.3
AT1G35430 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 2.8e-24 115.5 118 53.4
Ciclev10002690m.g Citrus clementina HOM05D007776 ORTHO05D009812 2.8e-24 115.5 104 60.6
FAN04G0521 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.8e-24 115.5 132 55.3
FAN08G2421 Fragaria x ananassa HOM05D007776 ORTHO05D009812 2.8e-24 115.5 132 54.5
FvH4_5g31870 Fragaria vesca HOM05D007776 ORTHO05D009812 1.8e-23 112.8 132 53.8
Gohir.D05G288000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 1.8e-23 112.8 123 59.3
Gorai.009G303100 Gossypium raimondii HOM05D007776 ORTHO05D009812 1.8e-23 112.8 123 59.3
AL1G50270 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 3.1e-23 112.1 100 55.0
RcHm_v2.0_Chr7g0227891 Rosa chinensis HOM05D007776 ORTHO05D009812 3.1e-23 112.1 133 54.1
Sp1g30150 Schrenkiella parvula HOM05D007776 ORTHO05D009812 4.0e-23 111.7 119 52.9
FAN18G1270 Fragaria x ananassa HOM05D007776 ORTHO05D009812 9.0e-23 110.5 124 54.0
Carub.0001s3303 Capsella rubella HOM05D007776 ORTHO05D009812 1.5e-22 109.8 105 54.3
THA.LOC104806792 Tarenaya hassleriana HOM05D007776 ORTHO05D009812 1.5e-22 109.8 126 52.4
VMungo1080G1686 Vigna mungo HOM05D007776 ORTHO05D009812 2.6e-22 109.0 111 53.2
Nn5g27525 Nelumbo nucifera HOM05D007776 ORTHO05D009812 3.4e-22 108.6 134 50.7
Aa31LG6G8730 Aethionema arabicum HOM05D007776 ORTHO05D009812 9.9e-22 107.1 115 55.7
Ca_14480_v3 Cicer arietinum L. HOM05D007776 ORTHO05D009812 9.9e-22 107.1 107 52.3
BcaB01g02801 Brassica carinata HOM05D007776 ORTHO05D009812 1.3e-21 106.7 121 53.7
Gohir.A05G287000 Gossypium hirsutum HOM05D007776 ORTHO05D009812 1.3e-21 106.7 124 56.5
Potri.013G107300 Populus trichocarpa HOM05D007776 ORTHO05D009812 1.3e-21 106.7 130 53.1
Sed0008767 Sechium edule HOM05D007776 ORTHO05D009812 1.3e-21 106.7 113 56.6
Thhalv10029064m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 2.2e-21 105.9 128 52.3
QL02p026198 Quercus lobata HOM05D007776 ORTHO05D009812 2.9e-21 105.5 121 51.2
CARHR034200 Cardamine hirsuta HOM05D007776 ORTHO05D009812 8.4e-21 104.0 99 54.5
Psat5g210040 Pisum sativum HOM05D007776 ORTHO05D009812 1.1e-20 103.6 124 50.0
BcaC01g04727 Brassica carinata HOM05D007776 ORTHO05D009812 1.9e-20 102.8 124 54.0
BraA09t38716Z Brassica rapa HOM05D007776 ORTHO05D009812 1.9e-20 102.8 100 55.0
Sabra19G0091100 Salix brachista HOM05D007776 ORTHO05D009812 3.2e-20 102.1 131 51.1
A09p31800 Brassica napus HOM05D007776 ORTHO05D009812 4.2e-20 101.7 100 55.0
C06p11140 Brassica napus HOM05D007776 ORTHO05D009812 5.4e-20 101.3 100 54.0
BolC6t36249H Brassica oleracea HOM05D007776 ORTHO05D009812 5.4e-20 101.3 100 54.0
Medtr0045s0130 Medicago truncatula HOM05D007776 ORTHO05D009812 7.1e-20 100.9 106 52.8
BcaC08g43737 Brassica carinata HOM05D007776 ORTHO05D009812 1.2e-19 100.1 100 53.0
TPR.G27845 Trifolium pratense HOM05D000479 ORTHO05D009812 1.2e-19 100.1 126 48.4
PGR042G2621 Punica granatum HOM05D007776 ORTHO05D009812 1.6e-19 99.8 134 49.3
C03p34420 Brassica napus HOM05D007776 ORTHO05D009812 2.1e-19 99.4 124 53.2
BolC3t15751H Brassica oleracea HOM05D007776 ORTHO05D009812 2.1e-19 99.4 124 53.2
Lalb_Chr25g0282901 Lupinus albus HOM05D007776 ORTHO05D009812 4.6e-19 98.2 112 51.8
Dinv41753 Davidia involucrata HOM05D000238 ORTHO05D002999 7.9e-19 97.4 106 57.5
Duzib177G0943 Durio zibethinus HOM05D007776 ORTHO05D009812 7.9e-19 97.4 104 54.8
Phvul.005G023800 Phaseolus vulgaris HOM05D007776 ORTHO05D009812 7.9e-19 97.4 103 52.4
Potri.019G079800 Populus trichocarpa HOM05D007776 ORTHO05D009812 1.3e-18 96.7 129 51.9
Sabra13G0092600 Salix brachista HOM05D007776 ORTHO05D009812 3.0e-18 95.5 124 50.8
Sp6g08370 Schrenkiella parvula HOM05D007776 ORTHO05D009812 5.1e-18 94.7 127 46.5
A03p28480 Brassica napus HOM05D007776 ORTHO05D009812 1.5e-17 93.2 124 52.4
BraA03t12053Z Brassica rapa HOM05D007776 ORTHO05D009812 1.5e-17 93.2 124 52.4
Thhalv10001838m.g Eutrema salsugineum HOM05D007776 ORTHO05D009812 1.5e-17 93.2 100 53.0
Solyc01g087860.2 Solanum lycopersicum HOM05D007776 ORTHO05D009812 4.3e-17 91.7 127 48.0
Glyma.15G276200 Glycine max HOM05D007776 ORTHO05D009812 1.6e-16 89.7 77 57.1
ClCG11G008540 Citrullus lanatus HOM05D007776 ORTHO05D009812 2.1e-16 89.4 139 46.8
Sopen01g034790 Solanum pennellii HOM05D007776 ORTHO05D009812 4.8e-16 88.2 121 48.8
PGSC0003DMG400006837 Solanum tuberosum HOM05D007776 ORTHO05D009812 1.4e-15 86.7 116 48.3
Lj3g0020626 Lotus japonicus HOM05D007776 ORTHO05D009812 2.4e-15 85.9 102 52.0
Duzib116G0238 Durio zibethinus HOM05D007776 ORTHO05D009812 3.1e-15 85.5 106 47.2
Thecc.08G190700 Theobroma cacao HOM05D007776 ORTHO05D009812 2.0e-14 82.8 119 46.2
CSS0049282 Camellia sinensis var. sinensis HOM05D007776 ORTHO05D009812 2.6e-14 82.4 103 52.4
Cpa.g.sc507.3 Carica papaya HOM05D007776 ORTHO05D009812 4.5e-14 81.6 111 45.0
Glyma.10G090400 Glycine max HOM05D007776 ORTHO05D009812 4.5e-14 81.6 106 48.1
MD08G1218400 Malus domestica HOM05D007776 ORTHO05D009812 4.5e-14 81.6 83 56.6
CARHR260240 Cardamine hirsuta HOM05D007776 ORTHO05D009812 1.3e-13 80.1 123 47.2
Ah.05g178510 Amaranthus hybridus HOM05D007776 ORTHO05D009812 2.9e-13 79.0 113 48.7
Rhsim12G0006900 Rhododendron simsii HOM05D007776 ORTHO05D009812 4.2e-12 75.1 98 53.1
Migut.C01313 Erythranthe guttata HOM05D007776 ORTHO05D009812 9.3e-12 73.9 108 46.3
TAR628G0395 Trochodendron aralioides HOM05D007776 ORTHO05D009812 1.2e-11 73.6 119 42.0
AL6G42920 Arabidopsis lyrata HOM05D007776 ORTHO05D009812 6.0e-11 71.2 124 41.9
Lsat_1_v5_gn_3_48301 Lactuca sativa HOM05D007776 ORTHO05D009812 3.3e-09 65.5 107 42.1
AT4G09170 Arabidopsis thaliana HOM05D007776 ORTHO05D009812 2.8e-08 62.4 124 36.3
unitig_46.g17995 Utricularia gibba HOM05D007776 ORTHO05D009812 4.8e-08 61.6 92 42.4
EL10Ac1g00128 Beta vulgaris HOM05D007776 ORTHO05D009812 6.2e-08 61.2 117 41.0
Cc10_g10000 Coffea canephora HOM05D007776 ORTHO05D009812 8.1e-08 60.8 108 43.5
SalBow7G1484 Salvia bowleyana HOM05D007776 ORTHO05D009812 8.1e-08 60.8 92 45.7
Lsat_1_v5_gn_8_157180 Lactuca sativa HOM05D007776 ORTHO05D009812 1.8e-07 59.7 51 58.8
ECA233G5618 Erigeron canadensis HOM05D007776 ORTHO05D009812 2.4e-07 59.3 52 55.8
HanXRQChr05g0130261 Helianthus annuus HOM05D007776 ORTHO05D009812 2.4e-07 59.3 89 42.7
COL.COLO4_25869 Corchorus olitorius HOM05D007776 ORTHO05D009812 5.8e-06 54.7 52 55.8


User provided reference genes

Program Settings