Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G122000 Carya illinoinensis HOM05D004085 ORTHO05D005189 1.4e-189 666.0 318 100.0
Cfa008850 Carpinus fangiana HOM05D004085 ORTHO05D005189 7.0e-160 567.4 303 88.8
Haze_11859 Corylus avellana HOM05D004085 ORTHO05D005189 2.2e-158 562.4 369 75.3
Duzib251G0046 Durio zibethinus HOM05D004085 ORTHO05D005189 7.2e-157 557.4 316 82.6
TWI75G0426 Tripterygium wilfordii HOM05D004085 ORTHO05D005189 8.0e-156 553.9 317 82.0
Dinv34021 Davidia involucrata HOM05D004085 ORTHO05D005189 2.3e-155 552.4 316 81.3
Ciclev10032152m.g Citrus clementina HOM05D004085 ORTHO05D005189 4.0e-155 551.6 316 82.0
CANSAT64G3016 Cannabis sativa HOM05D004085 ORTHO05D005189 1.2e-154 550.1 316 81.6
Phvul.003G280600 Phaseolus vulgaris HOM05D004085 ORTHO05D005189 3.4e-154 548.5 316 80.7
Gohir.A03G106500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 9.8e-154 547.0 319 79.9
Atru.chr11.1559 Acer truncatum HOM05D004085 ORTHO05D005189 2.8e-153 545.4 316 81.0
Prupe.1G293400 Prunus persica HOM05D004085 ORTHO05D005189 4.8e-153 544.7 318 80.8
MD16G1055900 Malus domestica HOM05D004085 ORTHO05D005189 1.1e-152 543.5 321 80.1
Gorai.005G147600 Gossypium raimondii HOM05D004085 ORTHO05D005189 1.4e-152 543.1 319 79.6
Gohir.D02G131700 Gossypium hirsutum HOM05D004085 ORTHO05D005189 4.1e-152 541.6 319 79.3
Medtr8g066120 Medicago truncatula HOM05D004085 ORTHO05D005189 4.1e-152 541.6 316 80.1
Manes.05G115200 Manihot esculenta HOM05D004085 ORTHO05D005189 5.4e-152 541.2 316 79.1
Glyma.05G183800 Glycine max HOM05D004085 ORTHO05D005189 2.0e-151 539.3 316 78.5
Ca_22870_v3 Cicer arietinum L. HOM05D004085 ORTHO05D005189 7.7e-151 537.3 318 79.6
MD13G1056600 Malus domestica HOM05D004085 ORTHO05D005189 7.7e-151 537.3 321 80.1
Psat4g118760 Pisum sativum HOM05D004085 ORTHO05D005189 7.7e-151 537.3 316 79.1
Thecc.02G322800 Theobroma cacao HOM05D004085 ORTHO05D005189 1.0e-150 537.0 316 79.1
arahy.Tifrunner.gnm1.ann1.34XV9Z Arachis hypogaea HOM05D004085 ORTHO05D005189 1.3e-150 536.6 316 79.7
VMungo0251G3520 Vigna mungo HOM05D004085 ORTHO05D005189 1.7e-150 536.2 338 75.4
CsaV3_6G033900 Cucumis sativus L. HOM05D004085 ORTHO05D005189 2.3e-150 535.8 317 79.8
Psat4g122760 Pisum sativum HOM05D004085 ORTHO05D005189 6.5e-150 534.3 316 78.8
Lj4g0023791 Lotus japonicus HOM05D004085 ORTHO05D005189 8.6e-150 533.9 316 79.4
Lalb_Chr20g0117031 Lupinus albus HOM05D004085 ORTHO05D005189 7.2e-149 530.8 314 78.7
PGR102G0161 Punica granatum HOM05D004085 ORTHO05D005189 7.2e-149 530.8 316 78.8
ClCG08G010600 Citrullus lanatus HOM05D004085 ORTHO05D005189 1.0e-147 526.9 317 77.9
Hma1.2p1_0428F.1_g150850 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 4.0e-147 525.0 318 77.7
MELO3C011402.2 Cucumis melo HOM05D004085 ORTHO05D005189 6.8e-147 524.2 317 78.5
Lalb_Chr15g0084991 Lupinus albus HOM05D004085 ORTHO05D005189 2.6e-146 522.3 316 77.2
Rhsim09G0122200 Rhododendron simsii HOM05D004085 ORTHO05D005189 2.6e-146 522.3 316 77.2
Eucgr.J01102 Eucalyptus grandis HOM05D004085 ORTHO05D005189 4.4e-146 521.5 316 77.2
Cpa.g.sc1.168 Carica papaya HOM05D004085 ORTHO05D005189 5.7e-146 521.2 319 76.2
Nn4g23533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 7.5e-146 520.8 316 75.3
THA.LOC104805212 Tarenaya hassleriana HOM05D004085 ORTHO05D005189 1.1e-144 516.9 318 77.0
vmacro10475 Vaccinium macrocarpon HOM05D004085 ORTHO05D005189 1.4e-144 516.5 316 76.6
Actinidia07768 Actinidia chinensis HOM05D004085 ORTHO05D005189 4.1e-144 515.0 321 76.0
Migut.D01616 Erythranthe guttata HOM05D004085 ORTHO05D005189 5.4e-144 514.6 316 74.7
Sed0007813 Sechium edule HOM05D004085 ORTHO05D005189 1.2e-143 513.5 320 76.9
DCAR_011575 Daucus carota HOM05D004085 ORTHO05D005189 2.0e-143 512.7 316 72.5
Aqoxy3G03746 Aquilegia oxysepala HOM05D004085 ORTHO05D005189 2.7e-143 512.3 316 74.1
Sc14g0007770 Simmondsia chinensis HOM05D004085 ORTHO05D005189 7.8e-143 510.8 319 75.9
AL5G13590 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 2.3e-142 509.2 318 74.8
Peaxi162Scf00873g00113 Petunia axillaris HOM05D004085 ORTHO05D005189 2.9e-142 508.8 320 73.4
DCAR_007209 Daucus carota HOM05D004085 ORTHO05D005189 3.8e-142 508.4 316 75.0
GSVIVG01008152001 Vitis vinifera HOM05D004085 ORTHO05D005189 3.8e-142 508.4 316 74.1
CSS0028863 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-141 506.9 316 74.7
Carub.0005s0294 Capsella rubella HOM05D004085 ORTHO05D005189 1.1e-141 506.9 318 74.5
Nitab4.5_0001071g0010 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.1e-141 506.9 318 73.3
Sopen04g001280 Solanum pennellii HOM05D004085 ORTHO05D005189 1.5e-141 506.5 316 74.4
Nitab4.5_0000591g0050 Nicotiana tabacum HOM05D004085 ORTHO05D005189 1.9e-141 506.1 313 74.1
BcaC06g31165 Brassica carinata HOM05D004085 ORTHO05D005189 4.3e-141 505.0 318 75.2
RcHm_v2.0_Chr4g0437351 Rosa chinensis HOM05D004085 ORTHO05D005189 9.5e-141 503.8 317 74.4
Sp2g14620 Schrenkiella parvula HOM05D004085 ORTHO05D005189 1.6e-140 503.1 318 75.2
PGSC0003DMG400001937 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.6e-140 503.1 318 73.3
Aa31LG2G6920 Aethionema arabicum HOM05D004085 ORTHO05D005189 2.1e-140 502.7 333 71.2
Hma1.2p1_0595F.1_g186285 Hydrangea macrophylla HOM05D004085 ORTHO05D005189 2.1e-140 502.7 316 75.0
Thhalv10004640m.g Eutrema salsugineum HOM05D004085 ORTHO05D005189 2.8e-140 502.3 318 75.2
Cc11_g11560 Coffea canephora HOM05D004085 ORTHO05D005189 1.0e-139 500.4 320 73.8
TAR629G1999 Trochodendron aralioides HOM05D004085 ORTHO05D005189 1.0e-139 500.4 316 73.7
AL3G42500 Arabidopsis lyrata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 318 74.2
Dinv07974 Davidia involucrata HOM05D004085 ORTHO05D005189 1.4e-139 500.0 320 74.7
BcaC06g31143 Brassica carinata HOM05D004085 ORTHO05D005189 1.8e-139 499.6 318 74.2
Nitab4.5_0002863g0020 Nicotiana tabacum HOM05D004085 ORTHO05D005189 4.0e-139 498.4 316 72.8
C07p34240 Brassica napus HOM05D004085 ORTHO05D005189 5.2e-139 498.0 318 73.9
BolC7t43952H Brassica oleracea HOM05D004085 ORTHO05D005189 5.2e-139 498.0 318 73.9
Lj3A1027G87 Lonicera japonica HOM05D004085 ORTHO05D005189 5.2e-139 498.0 368 65.8
BcaC03g17242 Brassica carinata HOM05D004085 ORTHO05D005189 8.9e-139 497.3 318 74.2
A06p42850 Brassica napus HOM05D004085 ORTHO05D005189 2.6e-138 495.7 318 73.6
BolC2t11263H Brassica oleracea HOM05D004085 ORTHO05D005189 2.6e-138 495.7 318 73.9
CAN.G587.59 Capsicum annuum HOM05D004085 ORTHO05D005189 3.4e-138 495.4 316 72.8
Ah.03g138610 Amaranthus hybridus HOM05D004085 ORTHO05D005189 4.4e-138 495.0 316 73.7
AT2G03800 Arabidopsis thaliana HOM05D004085 ORTHO05D005189 4.4e-138 495.0 318 73.0
BraA06t27197Z Brassica rapa HOM05D004085 ORTHO05D005189 5.8e-138 494.6 318 73.6
CARHR146210 Cardamine hirsuta HOM05D004085 ORTHO05D005189 7.5e-138 494.2 316 73.7
FAN12G2772 Fragaria x ananassa HOM05D004085 ORTHO05D005189 7.5e-138 494.2 316 74.1
A02p33630 Brassica napus HOM05D004085 ORTHO05D005189 9.8e-138 493.8 318 73.6
HanXRQChr12g0365061 Helianthus annuus HOM05D004085 ORTHO05D005189 9.8e-138 493.8 316 72.8
PGSC0003DMG402004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 9.8e-138 493.8 316 73.1
PGR044G1995 Punica granatum HOM05D004085 ORTHO05D005189 1.3e-137 493.4 323 70.9
FAN22G1834 Fragaria x ananassa HOM05D004085 ORTHO05D005189 2.9e-137 492.3 316 73.7
PSO063G3410 Papaver somniferum HOM05D004085 ORTHO05D005189 3.7e-137 491.9 319 72.1
BcaB07g30279 Brassica carinata HOM05D004085 ORTHO05D005189 4.9e-137 491.5 318 74.2
C02p51780 Brassica napus HOM05D004085 ORTHO05D005189 6.4e-137 491.1 318 73.3
ECA233G2807 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.1e-136 490.3 316 71.8
PSO409G0049 Papaver somniferum HOM05D004085 ORTHO05D005189 1.1e-136 490.3 319 71.8
Solyc06g069390.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.4e-136 490.0 316 72.5
Sopen06g026660 Solanum pennellii HOM05D004085 ORTHO05D005189 1.8e-136 489.6 316 72.2
Duzib248G1362 Durio zibethinus HOM05D004085 ORTHO05D005189 2.4e-136 489.2 316 73.7
MSTRG.779 Avicennia marina HOM05D004085 ORTHO05D005189 4.1e-136 488.4 317 73.2
Gorai.007G040300 Gossypium raimondii HOM05D004085 ORTHO05D005189 4.1e-136 488.4 316 71.2
Gohir.D11G037500 Gossypium hirsutum HOM05D004085 ORTHO05D005189 5.4e-136 488.0 316 71.2
HanXRQChr05g0157451 Helianthus annuus HOM05D004085 ORTHO05D005189 3.5e-135 485.3 318 71.4
MSTRG.7728 Avicennia marina HOM05D004085 ORTHO05D005189 2.3e-134 482.6 317 71.6
ATR0691G189 Amborella trichopoda HOM05D004085 ORTHO05D005189 5.0e-134 481.5 316 71.5
Potri.015G048700 Populus trichocarpa HOM05D004085 ORTHO05D005189 1.9e-133 479.6 318 70.1
Peaxi162Scf00013g00834 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-133 479.2 309 72.5
ECA246G2852 Erigeron canadensis HOM05D004085 ORTHO05D005189 1.6e-132 476.5 316 69.6
Sabra15G0078600 Salix brachista HOM05D004085 ORTHO05D005189 2.8e-132 475.7 318 70.1
Manes.06G081100 Manihot esculenta HOM05D004085 ORTHO05D005189 3.6e-132 475.3 318 69.5
CSS0006421 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 4.7e-132 474.9 316 70.6
Hund25155 Selenicereus undatus HOM05D004085 ORTHO05D005189 8.0e-132 474.2 392 61.0
Os08g0339200 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 1.8e-131 473.0 318 70.8
SalBow2G2246 Salvia bowleyana HOM05D004085 ORTHO05D005189 3.1e-131 472.2 317 70.0
Lsat_1_v5_gn_5_23401 Lactuca sativa HOM05D004085 ORTHO05D005189 4.0e-131 471.9 316 69.3
CDE01G0369 Ceratophyllum demersum HOM05D004085 ORTHO05D005189 5.8e-130 468.0 316 68.7
CSS0016924 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 3.7e-129 465.3 316 70.9
Lsat_1_v5_gn_8_36601 Lactuca sativa HOM05D004085 ORTHO05D005189 6.4e-129 464.5 316 70.6
Zm00001eb276680 Zea mays HOM05D004085 ORTHO05D005189 1.2e-127 460.3 321 68.2
FAN07G2517 Fragaria x ananassa HOM05D004085 ORTHO05D005189 1.6e-127 459.9 404 58.4
Nitab4.5_0002449g0030 Nicotiana tabacum HOM05D004085 ORTHO05D005189 6.6e-126 454.5 316 68.7
CSS0030921 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.9e-125 453.0 320 69.4
COL.COLO4_27493 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.9e-125 453.0 293 69.6
AUR62007873 Chenopodium quinoa HOM05D004085 ORTHO05D005189 7.3e-125 451.1 316 68.4
EL10Ac6g14673 Beta vulgaris HOM05D004085 ORTHO05D005189 1.6e-124 449.9 339 64.6
AUR62003058 Chenopodium quinoa HOM05D004085 ORTHO05D005189 2.8e-124 449.1 316 67.4
MBI14_g08107_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 1.9e-120 436.4 268 75.7
HPP92_003714 Vanilla planifolia HOM05D004085 ORTHO05D005189 1.9e-120 436.4 289 71.6
SGA_v2.0_scaffold36G14490 Striga asiatica HOM05D004085 ORTHO05D005189 2.4e-120 436.0 317 66.9
Gohir.A11G034100 Gossypium hirsutum HOM05D004085 ORTHO05D005189 1.9e-117 426.4 316 64.9
Migut.L01162 Erythranthe guttata HOM05D004085 ORTHO05D005189 2.1e-116 422.9 284 70.4
Mapoly0007s0171 Marchantia polymorpha HOM05D004085 ORTHO05D005189 8.1e-116 421.0 325 61.5
Lj5A137T62 Lonicera japonica HOM05D004085 ORTHO05D005189 1.2e-114 417.2 290 70.0
COL.COLO4_27802 Corchorus olitorius HOM05D004085 ORTHO05D005189 1.2e-111 407.1 322 64.3
SHI14335 Sapria himalayana HOM05D004085 ORTHO05D005189 1.6e-111 406.8 333 60.1
MD16G1055500 Malus domestica HOM05D004085 ORTHO05D005189 1.0e-110 404.1 305 67.2
Cpa.g.sc3.236 Carica papaya HOM05D004085 ORTHO05D005189 1.1e-109 400.6 337 57.3
SMO146G0350 Selaginella moellendorffii HOM05D004085 ORTHO05D005189 4.0e-107 392.1 323 58.5
Pp3c3_10070 Physcomitrium patens HOM05D004085 ORTHO05D005189 6.9e-107 391.3 318 61.0
Pp3c4_31680 Physcomitrium patens HOM05D004085 ORTHO05D005189 9.0e-107 391.0 318 59.1
AagrBONN_evm.TU.Sc2ySwM_344.2928 Anthoceros agrestis HOM05D004085 ORTHO05D005189 9.3e-104 380.9 318 56.9
Eucgr.K02549 Eucalyptus grandis HOM05D004085 ORTHO05D005189 1.9e-101 373.2 316 57.6
Nn3g17533 Nelumbo nucifera HOM05D004085 ORTHO05D005189 4.5e-98 362.1 293 60.1
Oeu045347.1 Olea europaea HOM05D004085 ORTHO05D005189 2.9e-97 359.4 244 69.7
BraA02t08382Z Brassica rapa HOM05D004085 ORTHO05D005189 6.4e-97 358.2 225 74.2
CBR_g34346 Chara braunii HOM05D004085 ORTHO05D005189 9.3e-88 327.8 354 46.6
FvH4_4g29300 Fragaria vesca HOM05D004085 ORTHO05D005189 2.1e-84 316.6 200 74.5
arahy.Tifrunner.gnm1.ann1.A9XC2E Arachis hypogaea HOM05D004085 ORTHO05D005189 6.9e-83 311.6 185 78.4
unitig_22.g6891 Utricularia gibba HOM05D004085 ORTHO05D005189 1.9e-77 293.5 218 64.2
PGSC0003DMG401004079 Solanum tuberosum HOM05D004085 ORTHO05D005189 1.5e-74 283.9 183 74.3
C07p34190 Brassica napus HOM05D004085 ORTHO05D005189 4.8e-68 262.3 187 68.4
TPR.G27985 Trifolium pratense HOM05D004085 ORTHO05D005189 1.0e-65 254.6 151 78.8
Os09g0248000 Oryza sativa ssp. japonica HOM05D004085 ORTHO05D005189 5.0e-65 252.3 165 71.5
CSS0002590 Camellia sinensis var. sinensis HOM05D004085 ORTHO05D005189 1.1e-61 241.1 305 47.2
Oeu045348.1 Olea europaea HOM05D004085 ORTHO05D005189 1.2e-58 231.1 145 73.8
Solyc04g005300.4 Solanum lycopersicum HOM05D004085 ORTHO05D005189 1.6e-55 220.7 140 72.1
MBI10_g36395_MAGBIO Magnolia biondii HOM05D004085 ORTHO05D005189 3.8e-49 199.5 147 63.3
BolC7t43946H Brassica oleracea HOM05D004085 ORTHO05D005189 5.0e-41 172.6 100 77.0
Peaxi162Scf00098g00096 Petunia axillaris HOM05D004085 ORTHO05D005189 2.5e-40 170.2 122 66.4
HPP92_003722 Vanilla planifolia HOM05D004085 ORTHO05D005189 2.6e-37 160.2 118 66.1
MD05G1127700 Malus domestica HOM05D004085 ORTHO05D005189 1.4e-35 154.5 93 78.5
SEGI_05680 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 2.9e-33 146.7 106 65.1
TPR.G3316 Trifolium pratense HOM05D004085 ORTHO05D026373 7.2e-32 142.1 91 74.7
BolC7t43934H Brassica oleracea HOM05D004085 ORTHO05D005189 4.0e-30 136.3 105 64.8
TPR.G40588 Trifolium pratense HOM05D004085 ORTHO05D005189 5.7e-29 132.5 69 82.6
Lj3C737G8 Lonicera japonica HOM05D004085 ORTHO05D005189 1.6e-26 124.4 75 69.3
Thecc.03G108100 Theobroma cacao HOM05D004085 ORTHO05D026373 1.0e-25 121.7 86 64.0
Duzib068G1264 Durio zibethinus HOM05D004085 ORTHO05D005189 6.6e-25 119.0 67 77.6
Lj5A720T31 Lonicera japonica HOM05D004085 ORTHO05D026373 6.1e-23 112.5 165 40.0
Actinidia04797 Actinidia chinensis HOM05D004085 ORTHO05D026373 7.5e-21 105.5 74 63.5
SEGI_34269 Sequoiadendron giganteum HOM05D004085 ORTHO05D005189 1.7e-20 104.4 58 75.9
BcaC06g31148 Brassica carinata HOM05D004085 ORTHO05D005189 4.3e-16 89.7 72 59.7
CANSAT64G2585 Cannabis sativa HOM05D004085 ORTHO05D043374 3.2e-11 73.6 55 61.8
Ciclev10024148m.g Citrus clementina HOM05D004085 ORTHO05D043374 5.4e-11 72.8 43 79.1
HPP92_003723 Vanilla planifolia HOM05D004085 ORTHO05D005189 3.0e-09 67.0 80 48.8
Eucgr.B03119 Eucalyptus grandis HOM05D004085 ORTHO05D195170 3.9e-09 66.6 56 58.9
PGR102G2199 Punica granatum HOM05D004085 ORTHO05D000487 2.8e-07 60.5 54 55.6
Medtr8g066150 Medicago truncatula HOM05D004085 ORTHO05D263454 6.8e-06 55.8 81 42.0


User provided reference genes

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