Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G102600 Carya illinoinensis HOM05D005869 ORTHO05D007229 1.1e-189 666.4 321 100.0
Prupe.1G217100 Prunus persica HOM05D005869 ORTHO05D007229 1.1e-112 410.6 317 66.2
RcHm_v2.0_Chr4g0429061 Rosa chinensis HOM05D005869 ORTHO05D007229 5.5e-112 408.3 319 65.5
MD13G1129300 Malus domestica HOM05D005869 ORTHO05D007229 6.0e-111 404.8 312 66.0
GSVIVG01004938001 Vitis vinifera HOM05D005869 ORTHO05D007229 6.0e-111 404.8 317 65.6
Atru.chr11.2424 Acer truncatum HOM05D005869 ORTHO05D007229 4.3e-109 398.7 317 64.7
Ciclev10032244m.g Citrus clementina HOM05D005869 ORTHO05D007229 9.7e-109 397.5 316 63.0
FvH4_4g22830 Fragaria vesca HOM05D005869 ORTHO05D007229 3.1e-107 392.5 311 64.6
Potri.001G066000 Populus trichocarpa HOM05D005869 ORTHO05D007229 9.0e-107 391.0 316 62.7
Sabra01G0045900 Salix brachista HOM05D005869 ORTHO05D007229 1.2e-106 390.6 321 62.6
Potri.003G163800 Populus trichocarpa HOM05D005869 ORTHO05D007229 4.5e-106 388.7 316 64.6
MD16G1129300 Malus domestica HOM05D005869 ORTHO05D007229 8.5e-105 384.4 315 62.9
Duzib132G0160 Durio zibethinus HOM05D005869 ORTHO05D007229 1.4e-104 383.6 319 62.7
Thecc.02G194400 Theobroma cacao HOM05D005869 ORTHO05D007229 9.4e-104 380.9 317 63.4
Gohir.D02G175000 Gossypium hirsutum HOM05D005869 ORTHO05D007229 3.6e-103 379.0 317 63.1
Gohir.A03G152800 Gossypium hirsutum HOM05D005869 ORTHO05D007229 6.1e-103 378.3 317 63.1
Gorai.005G196600 Gossypium raimondii HOM05D005869 ORTHO05D007229 1.1e-101 374.0 320 62.2
Hma1.2p1_1834F.1_g304595 Hydrangea macrophylla HOM05D005869 ORTHO05D007229 7.4e-101 371.3 319 62.7
Manes.08G102300 Manihot esculenta HOM05D005869 ORTHO05D007229 8.2e-100 367.9 317 59.6
TPR.G35001 Trifolium pratense HOM05D005869 ORTHO05D007229 1.8e-99 366.7 319 60.5
PSO017G3988 Papaver somniferum HOM05D005869 ORTHO05D007229 6.9e-99 364.8 319 58.3
Duzib052G0289 Durio zibethinus HOM05D005869 ORTHO05D007229 2.0e-98 363.2 319 60.5
TWI36G0175 Tripterygium wilfordii HOM05D005869 ORTHO05D007229 2.6e-98 362.8 320 57.5
TAR622G0237 Trochodendron aralioides HOM05D005869 ORTHO05D007229 4.5e-98 362.1 311 61.1
Glyma.13G264200 Glycine max HOM05D005869 ORTHO05D007229 1.3e-97 360.5 318 59.4
CSS0039203 Camellia sinensis var. sinensis HOM05D005869 ORTHO05D007229 2.2e-97 359.8 323 58.5
PSO478G4440 Papaver somniferum HOM05D005869 ORTHO05D007229 3.8e-97 359.0 317 57.7
AL1G41620 Arabidopsis lyrata HOM05D005869 ORTHO05D007229 8.5e-97 357.8 313 58.1
Actinidia09599 Actinidia chinensis HOM05D005869 ORTHO05D007229 4.2e-96 355.5 310 59.0
AT1G28100 Arabidopsis thaliana HOM05D005869 ORTHO05D007229 2.7e-95 352.8 312 57.7
Lalb_Chr25g0285611 Lupinus albus HOM05D005869 ORTHO05D007229 2.7e-95 352.8 317 59.3
Medtr2g072940 Medicago truncatula HOM05D005869 ORTHO05D007229 7.9e-95 351.3 311 59.8
CARHR027570 Cardamine hirsuta HOM05D005869 ORTHO05D007229 1.0e-94 350.9 313 57.5
Sp1g24290 Schrenkiella parvula HOM05D005869 ORTHO05D007229 1.0e-94 350.9 318 57.9
Carub.0001s2653 Capsella rubella HOM05D005869 ORTHO05D007229 1.8e-94 350.1 312 56.1
Lj3g0004461 Lotus japonicus HOM05D005869 ORTHO05D007229 1.8e-94 350.1 317 58.0
CsaV3_4G002340 Cucumis sativus L. HOM05D005869 ORTHO05D007229 3.0e-94 349.4 311 59.2
ClCG07G011870 Citrullus lanatus HOM05D005869 ORTHO05D007229 3.9e-94 349.0 310 59.4
BcaC06g35333 Brassica carinata HOM05D005869 ORTHO05D007229 5.1e-94 348.6 313 58.1
Nn4g22166 Nelumbo nucifera HOM05D005869 ORTHO05D007229 5.1e-94 348.6 316 56.6
THA.LOC104820535 Tarenaya hassleriana HOM05D005869 ORTHO05D007229 8.8e-94 347.8 317 58.4
Eucgr.B03550 Eucalyptus grandis HOM05D005869 ORTHO05D007229 2.0e-93 346.7 291 62.5
Phvul.005G075700 Phaseolus vulgaris HOM05D005869 ORTHO05D007229 3.3e-93 345.9 318 56.6
MELO3C017808.2 Cucumis melo HOM05D005869 ORTHO05D007229 2.2e-92 343.2 313 58.8
PGR102G3220 Punica granatum HOM05D005869 ORTHO05D007229 2.2e-92 343.2 318 58.2
Sopen12g020650 Solanum pennellii HOM05D005869 ORTHO05D007229 4.8e-92 342.0 318 57.2
A07p11480 Brassica napus HOM05D005869 ORTHO05D007229 1.1e-91 340.9 322 56.5
Haze_12488 Corylus avellana HOM05D005869 ORTHO05D007229 1.8e-91 340.1 282 64.2
Solyc12g041880.2 Solanum lycopersicum HOM05D005869 ORTHO05D007229 1.8e-91 340.1 318 57.2
PGSC0003DMG400014477 Solanum tuberosum HOM05D005869 ORTHO05D007229 1.8e-91 340.1 321 57.0
Sed0007329 Sechium edule HOM05D005869 ORTHO05D007229 2.4e-91 339.7 311 57.9
Rhsim12G0098100 Rhododendron simsii HOM05D005869 ORTHO05D007229 3.1e-91 339.3 329 56.2
Migut.K01077 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.1e-91 339.0 315 56.5
Thhalv10008411m.g Eutrema salsugineum HOM05D005869 ORTHO05D007229 1.5e-90 337.0 312 57.1
Psat1g007680 Pisum sativum HOM05D005869 ORTHO05D007229 2.6e-90 336.3 317 57.1
Cc11_g15130 Coffea canephora HOM05D005869 ORTHO05D007229 3.5e-90 335.9 310 56.1
C07p17290 Brassica napus HOM05D005869 ORTHO05D007229 5.9e-90 335.1 313 56.9
Oeu044507.2 Olea europaea HOM05D005869 ORTHO05D007229 1.0e-89 334.3 333 54.7
BraA07t28937Z Brassica rapa HOM05D005869 ORTHO05D007229 2.2e-89 333.2 331 55.0
vmacro16076 Vaccinium macrocarpon HOM05D005869 ORTHO05D007229 2.5e-88 329.7 344 53.8
BolC7t42232H Brassica oleracea HOM05D005869 ORTHO05D007229 1.2e-87 327.4 322 55.3
arahy.Tifrunner.gnm1.ann1.WRPQ8T Arachis hypogaea HOM05D005869 ORTHO05D007229 3.6e-87 325.9 309 57.0
BcaB07g32415 Brassica carinata HOM05D005869 ORTHO05D007229 3.6e-87 325.9 313 55.9
Nitab4.5_0002899g0010 Nicotiana tabacum HOM05D005869 ORTHO05D007229 6.1e-87 325.1 308 57.1
Aqoxy5G03171 Aquilegia oxysepala HOM05D005869 ORTHO05D007229 8.0e-87 324.7 312 54.8
arahy.Tifrunner.gnm1.ann1.3C70LE Arachis hypogaea HOM05D005869 ORTHO05D007229 8.0e-87 324.7 309 57.0
MSTRG.8047 Avicennia marina HOM05D005869 ORTHO05D007229 9.7e-85 317.8 319 53.3
EL10Ac6g13596 Beta vulgaris HOM05D005869 ORTHO05D007229 2.8e-84 316.2 307 53.1
CDE05G0434 Ceratophyllum demersum HOM05D005869 ORTHO05D007229 8.2e-84 314.7 322 52.2
A09p37960 Brassica napus HOM05D005869 ORTHO05D007229 9.1e-83 311.2 315 53.7
VMungo1080G1469 Vigna mungo HOM05D005869 ORTHO05D007229 3.5e-82 309.3 297 56.6
Ah.03g135600 Amaranthus hybridus HOM05D005869 ORTHO05D007229 5.9e-82 308.5 310 53.5
ECA233G2015 Erigeron canadensis HOM05D005869 ORTHO05D007229 7.7e-82 308.1 318 53.1
C05p26800 Brassica napus HOM05D005869 ORTHO05D007229 1.3e-81 307.4 325 52.0
Manes.09G187100 Manihot esculenta HOM05D005869 ORTHO05D007229 1.5e-80 303.9 239 62.8
BraA09t39308Z Brassica rapa HOM05D005869 ORTHO05D007229 1.9e-80 303.5 332 51.2
Peaxi162Scf00128g01773 Petunia axillaris HOM05D005869 ORTHO05D007229 4.7e-79 298.9 295 54.9
ATR0829G022 Amborella trichopoda HOM05D005869 ORTHO05D007229 8.0e-79 298.1 315 51.4
HanXRQChr12g0363371 Helianthus annuus HOM05D005869 ORTHO05D007229 2.3e-78 296.6 316 53.5
QL03p049767 Quercus lobata HOM05D005869 ORTHO05D007229 5.2e-78 295.4 197 74.6
HanXRQChr08g0210441 Helianthus annuus HOM05D005869 ORTHO05D007229 3.4e-77 292.7 316 50.9
BcaC05g26814 Brassica carinata HOM05D005869 ORTHO05D007229 7.5e-77 291.6 292 53.8
Sed0028093 Sechium edule HOM05D005869 ORTHO05D007229 7.5e-77 291.6 313 55.3
HPP92_000723 Vanilla planifolia HOM05D005869 ORTHO05D007229 8.3e-76 288.1 314 49.0
BolC5t31401H Brassica oleracea HOM05D005869 ORTHO05D007229 1.6e-74 283.9 301 52.8
Zm00001eb044420 Zea mays HOM05D005869 ORTHO05D007229 3.0e-70 269.6 314 47.8
Aa31sc1106G20 Aethionema arabicum HOM05D005869 ORTHO05D007229 5.7e-69 265.4 367 41.4
Lj6A836G36 Lonicera japonica HOM05D005869 ORTHO05D007229 2.8e-68 263.1 303 49.2
CANSAT01G1948 Cannabis sativa HOM05D005869 ORTHO05D007229 1.6e-66 257.3 275 53.1
MBI11_g11870_MAGBIO Magnolia biondii HOM05D000422 ORTHO05D001248 2.3e-62 243.4 318 45.3
BcaB03g13954 Brassica carinata HOM05D005869 ORTHO05D007229 6.8e-62 241.9 196 61.2
HanXRQChr08g0210391 Helianthus annuus HOM05D005869 ORTHO05D007229 1.5e-61 240.7 316 45.9
Cpa.g.sc498.3 Carica papaya HOM05D005869 ORTHO05D007229 2.6e-61 240.0 194 61.9
Pp3c14_12070 Physcomitrium patens HOM05D005869 ORTHO05D007229 1.1e-59 234.6 301 46.2
AagrBONN_evm.TU.Sc2ySwM_368.1764 Anthoceros agrestis HOM05D005869 ORTHO05D007229 2.3e-57 226.9 325 42.2
Migut.K01075 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.5e-56 221.5 321 40.8
Sabra03G0119100 Salix brachista HOM05D005869 ORTHO05D007229 6.8e-54 215.3 173 64.7
Mapoly0153s0008 Marchantia polymorpha HOM05D005869 ORTHO05D007229 2.2e-52 210.3 301 40.9
Migut.K01074 Erythranthe guttata HOM05D005869 ORTHO05D007229 4.9e-52 209.1 179 58.7
Oeu019435.1 Olea europaea HOM05D005869 ORTHO05D007229 3.2e-51 206.5 301 46.2
AUR62005704 Chenopodium quinoa HOM05D005869 ORTHO05D007229 2.0e-50 203.8 292 44.5
MSTRG.8048 Avicennia marina HOM05D005869 ORTHO05D007229 6.6e-49 198.7 314 40.4
SGA_v2.0_scaffold201G41354 Striga asiatica HOM05D005869 ORTHO05D007229 6.6e-49 198.7 315 43.2
Sc04g0000040 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.5e-48 197.6 140 69.3
Sc04g0000100 Simmondsia chinensis HOM05D005869 ORTHO05D007229 1.5e-48 197.6 140 69.3
FAN07G2435 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.2e-47 192.2 314 41.7
FAN12G1770 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.2e-47 192.2 315 41.9
Dinv19137 Davidia involucrata HOM05D005869 ORTHO05D007229 8.0e-47 191.8 175 57.7
FAN17G1058 Fragaria x ananassa HOM05D000001 ORTHO05D010470 6.8e-46 188.7 314 42.0
SalBow2G1918 Salvia bowleyana HOM05D005869 ORTHO05D007229 8.9e-46 188.3 346 39.0
SalBow7G3994 Salvia bowleyana HOM05D005869 ORTHO05D007229 5.8e-45 185.7 327 39.4
Hund16126 Selenicereus undatus HOM05D005869 ORTHO05D007229 2.4e-43 180.3 224 46.4
MCO09G131 Micromonas commoda HOM05D005869 ORTHO05D007229 2.7e-42 176.8 320 35.0
Cre03.g194450 Chlamydomonas reinhardtii HOM05D005869 ORTHO05D007229 3.5e-42 176.4 311 37.0
Nitab4.5_0000608g0060 Nicotiana tabacum HOM05D005869 ORTHO05D007229 1.7e-41 174.1 190 50.5
QL03p049770 Quercus lobata HOM05D005869 ORTHO05D007229 1.9e-40 170.6 115 72.2
BcaC05g26813 Brassica carinata HOM05D005869 ORTHO05D007229 3.3e-40 169.9 123 69.9
PRCOL_00000815 Prasinoderma coloniale HOM05D005869 ORTHO05D007229 1.4e-38 164.5 312 34.0
Lsat_1_v5_gn_4_151180 Lactuca sativa HOM05D005869 ORTHO05D007229 2.6e-37 160.2 228 42.5
COL.COLO4_06415 Corchorus olitorius HOM05D005869 ORTHO05D007229 7.6e-37 158.7 159 53.5
Ca_03922_v3 Cicer arietinum L. HOM05D005869 ORTHO05D007229 1.3e-36 157.9 158 55.1
Os10g0499600 Oryza sativa ssp. japonica HOM05D005869 ORTHO05D007229 1.7e-36 157.5 123 62.6
CBR_g3946 Chara braunii HOM05D005869 ORTHO05D007229 1.4e-35 154.5 316 34.5
Migut.K01072 Erythranthe guttata HOM05D005869 ORTHO05D007229 7.8e-34 148.7 139 53.2
SMO115G0111 Selaginella moellendorffii HOM05D005869 ORTHO05D007229 3.9e-33 146.4 116 63.8
Migut.O00624 Erythranthe guttata HOM05D005869 ORTHO05D007229 6.6e-33 145.6 230 38.7
Sc04g0000090 Simmondsia chinensis HOM05D005869 ORTHO05D007229 3.5e-26 123.2 153 46.4
Sc04g0000050 Simmondsia chinensis HOM05D005869 ORTHO05D007229 4.6e-26 122.9 153 45.8
unitig_26.g10430 Utricularia gibba HOM05D005869 ORTHO05D007229 1.6e-23 114.4 214 36.9
Migut.K01076 Erythranthe guttata HOM05D005869 ORTHO05D007229 9.0e-22 108.6 123 46.3
Hund16125 Selenicereus undatus HOM05D005869 ORTHO05D007229 7.8e-18 95.5 50 88.0
Glyma.12G234900 Glycine max HOM05D005869 ORTHO05D007229 4.0e-14 83.2 53 71.7
Actinidia34002 Actinidia chinensis HOM05D005869 ORTHO05D007229 2.0e-13 80.9 71 57.7
Migut.K01073 Erythranthe guttata HOM05D005869 ORTHO05D007229 5.4e-11 72.8 117 39.3
SEGI_05009 Sequoiadendron giganteum HOM05D005869 ORTHO05D007229 6.0e-10 69.3 93 41.9
arahy.Tifrunner.gnm1.ann1.6GV0UE Arachis hypogaea HOM05D001662 ORTHO05D005318 2.3e-09 67.4 76 51.3
COL.COLO4_06414 Corchorus olitorius HOM05D005869 ORTHO05D007229 3.9e-09 66.6 71 50.7
arahy.Tifrunner.gnm1.ann1.G1CRI5 Arachis hypogaea HOM05D000992 ORTHO05D001928 6.9e-06 55.8 52 59.6


User provided reference genes

Program Settings