Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G100600 Carya illinoinensis HOM05D002468 ORTHO05D009172 9.1e-113 410.2 202 100.0
Cfa009456 Carpinus fangiana HOM05D002468 ORTHO05D009172 2.2e-82 309.3 200 76.5
QL03p049029 Quercus lobata HOM05D002468 ORTHO05D009172 3.5e-72 275.4 180 72.8
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 3.9e-71 271.9 154 82.5
Hma1.2p1_1436F.1_g283230 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 1.9e-65 253.1 207 63.3
TWI75G1838 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 2.3e-63 246.1 200 64.5
Atru.chr12.1429 Acer truncatum HOM05D002468 ORTHO05D009172 5.0e-63 245.0 207 63.8
Potri.001G068300 Populus trichocarpa HOM05D002468 ORTHO05D009172 6.6e-63 244.6 205 65.4
TAR622G1298 Trochodendron aralioides HOM05D002468 ORTHO05D009172 1.5e-62 243.4 203 63.5
Manes.08G100500 Manihot esculenta HOM05D002468 ORTHO05D009172 1.9e-62 243.0 200 62.5
Dinv17538 Davidia involucrata HOM05D002468 ORTHO05D009172 2.1e-61 239.6 205 62.9
Prupe.1G214100 Prunus persica HOM05D002468 ORTHO05D009172 2.8e-61 239.2 215 62.8
Ciclev10005642m.g Citrus clementina HOM05D002468 ORTHO05D009172 3.6e-61 238.8 212 61.8
TWI36G1656 Tripterygium wilfordii HOM05D002468 ORTHO05D009172 4.7e-61 238.4 201 62.7
Nn4g22124 Nelumbo nucifera HOM05D002468 ORTHO05D009172 6.8e-60 234.6 206 60.7
Ca_07032_v3 Cicer arietinum L. HOM05D002468 ORTHO05D009172 1.2e-59 233.8 199 62.8
ClCG07G011930 Citrullus lanatus HOM05D002468 ORTHO05D009172 1.5e-59 233.4 199 62.8
Eucgr.G01979 Eucalyptus grandis HOM05D002468 ORTHO05D009172 1.5e-59 233.4 152 73.7
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 3.4e-59 232.3 144 75.7
Nitab4.5_0002569g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 4.4e-59 231.9 200 62.5
Thecc.02G191300 Theobroma cacao HOM05D002468 ORTHO05D009172 4.4e-59 231.9 203 61.6
MD16G1141800 Malus domestica HOM05D002468 ORTHO05D009172 5.8e-59 231.5 164 68.9
Rhsim12G0017000 Rhododendron simsii HOM05D002468 ORTHO05D009172 5.8e-59 231.5 205 60.5
Nitab4.5_0004349g0030 Nicotiana tabacum HOM05D002468 ORTHO05D009172 9.8e-59 230.7 202 61.9
Phvul.008G009400 Phaseolus vulgaris HOM05D002468 ORTHO05D009172 9.8e-59 230.7 168 64.9
Sabra01G0047500 Salix brachista HOM05D002468 ORTHO05D009172 9.8e-59 230.7 196 62.2
Actinidia30582 Actinidia chinensis HOM05D002468 ORTHO05D009172 2.2e-58 229.6 201 60.2
RcHm_v2.0_Chr4g0428781 Rosa chinensis HOM05D002468 ORTHO05D009172 2.9e-58 229.2 198 62.1
TPR.G9727 Trifolium pratense HOM05D002468 ORTHO05D009172 2.9e-58 229.2 160 69.4
GSVIVG01001099001 Vitis vinifera HOM05D002468 ORTHO05D009172 4.9e-58 228.4 203 60.6
vmacro01016 Vaccinium macrocarpon HOM05D002468 ORTHO05D009172 8.3e-58 227.6 147 71.4
Medtr7g006570 Medicago truncatula HOM05D002468 ORTHO05D009172 3.2e-57 225.7 165 66.7
CANSAT80G1997 Cannabis sativa HOM05D002468 ORTHO05D009172 5.4e-57 224.9 141 73.8
MELO3C017816.2 Cucumis melo HOM05D002468 ORTHO05D009172 5.4e-57 224.9 202 60.9
THA.LOC104825606 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 7.1e-57 224.6 201 59.2
Lj1g0015804 Lotus japonicus HOM05D002468 ORTHO05D009172 1.2e-56 223.8 198 62.1
PGR119G1456 Punica granatum HOM05D002468 ORTHO05D009172 1.2e-56 223.8 206 58.3
CsaV3_4G002230 Cucumis sativus L. HOM05D002468 ORTHO05D009172 1.6e-56 223.4 199 60.8
Sp6g30610 Schrenkiella parvula HOM05D002468 ORTHO05D009172 1.6e-56 223.4 205 59.5
Cc11_g14950 Coffea canephora HOM05D002468 ORTHO05D009172 2.7e-56 222.6 148 71.6
Peaxi162Scf00842g00418 Petunia axillaris HOM05D002468 ORTHO05D009172 2.7e-56 222.6 201 59.7
Sed0016874 Sechium edule HOM05D002468 ORTHO05D009172 2.7e-56 222.6 197 59.4
CAN.G624.2 Capsicum annuum HOM05D002468 ORTHO05D009172 3.5e-56 222.2 145 73.8
CARHR200020 Cardamine hirsuta HOM05D002468 ORTHO05D009172 6.0e-56 221.5 205 55.6
AL6G24030 Arabidopsis lyrata HOM05D002468 ORTHO05D009172 7.8e-56 221.1 203 59.1
VMungo1383G2635 Vigna mungo HOM05D002468 ORTHO05D009172 7.8e-56 221.1 198 56.6
Aa31LG3G14280 Aethionema arabicum HOM05D002468 ORTHO05D009172 1.0e-55 220.7 213 57.7
FvH4_4g22550 Fragaria vesca HOM05D002468 ORTHO05D009172 1.0e-55 220.7 200 58.0
Zm00001eb040970 Zea mays HOM05D002468 ORTHO05D009172 1.0e-55 220.7 153 70.6
Aqoxy5G03073 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 1.7e-55 219.9 201 56.2
Glyma.18G292600 Glycine max HOM05D002468 ORTHO05D009172 1.7e-55 219.9 130 77.7
Gohir.D04G141000 Gossypium hirsutum HOM05D002468 ORTHO05D009172 1.7e-55 219.9 203 60.6
Aqoxy5G03072 Aquilegia oxysepala HOM05D002468 ORTHO05D009172 2.3e-55 219.5 144 71.5
AT5G13410 Arabidopsis thaliana HOM05D002468 ORTHO05D009172 2.3e-55 219.5 205 57.6
Carub.0006s1157 Capsella rubella HOM05D002468 ORTHO05D009172 2.3e-55 219.5 205 57.1
Sopen11g017130 Solanum pennellii HOM05D002468 ORTHO05D009172 3.0e-55 219.2 143 73.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 3.9e-55 218.8 207 55.1
Migut.K01048 Erythranthe guttata HOM05D002468 ORTHO05D009172 3.9e-55 218.8 146 70.5
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.9e-55 218.8 200 58.0
PGSC0003DMG401028027 Solanum tuberosum HOM05D002468 ORTHO05D009172 3.9e-55 218.8 143 73.4
FAN07G2873 Fragaria x ananassa HOM05D002468 ORTHO05D009172 5.1e-55 218.4 200 58.0
Lalb_Chr04g0257311 Lupinus albus HOM05D002468 ORTHO05D009172 5.1e-55 218.4 158 67.7
Solyc11g033284.1 Solanum lycopersicum HOM05D002468 ORTHO05D009172 5.1e-55 218.4 143 73.4
CDE06G1087 Ceratophyllum demersum HOM05D002468 ORTHO05D009172 6.6e-55 218.0 153 67.3
Gorai.012G126000 Gossypium raimondii HOM05D002468 ORTHO05D009172 6.6e-55 218.0 203 60.1
A02p01900 Brassica napus HOM05D002468 ORTHO05D009172 8.6e-55 217.6 197 59.9
BraA02t05163Z Brassica rapa HOM05D002468 ORTHO05D009172 8.6e-55 217.6 197 59.9
Os07g0133700 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D009172 1.1e-54 217.2 168 65.5
Lsat_1_v5_gn_3_32621 Lactuca sativa HOM05D002468 ORTHO05D009172 1.5e-54 216.9 142 69.7
BcaNung01882 Brassica carinata HOM05D002468 ORTHO05D009172 2.5e-54 216.1 197 59.9
MSTRG.8059 Avicennia marina HOM05D002468 ORTHO05D009172 4.3e-54 215.3 206 56.8
PSO017G2800 Papaver somniferum HOM05D002468 ORTHO05D009172 4.3e-54 215.3 142 71.1
Sc11g0000070 Simmondsia chinensis HOM05D002468 ORTHO05D009172 5.6e-54 214.9 149 71.1
BcaNung01157 Brassica carinata HOM05D002468 ORTHO05D009172 7.3e-54 214.5 201 58.7
DCAR_026442 Daucus carota HOM05D002468 ORTHO05D009172 1.2e-53 213.8 144 70.8
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.6e-53 213.4 142 67.6
Thhalv10014743m.g Eutrema salsugineum HOM05D002468 ORTHO05D009172 1.4e-52 210.3 136 75.7
ATR0582G095 Amborella trichopoda HOM05D002468 ORTHO05D009172 1.2e-51 207.2 119 80.7
HPP92_024421 Vanilla planifolia HOM05D002468 ORTHO05D009172 1.5e-51 206.8 195 57.4
MBI11_g34559_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D009172 2.9e-50 202.6 184 62.0
BolC2t06553H Brassica oleracea HOM05D002468 ORTHO05D009172 4.9e-50 201.8 204 55.9
AUR62041001 Chenopodium quinoa HOM05D002468 ORTHO05D009172 1.9e-49 199.9 171 59.6
Oeu010258.1 Olea europaea HOM05D002468 ORTHO05D009172 3.2e-49 199.1 230 51.7
SEGI_23050 Sequoiadendron giganteum HOM05D002468 ORTHO05D009172 3.2e-49 199.1 163 60.7
EL10Ac7g17009 Beta vulgaris HOM05D002468 ORTHO05D009172 7.1e-49 198.0 111 80.2
C02p06120 Brassica napus HOM05D002468 ORTHO05D009172 7.1e-49 198.0 195 56.4
Lj6A840G36 Lonicera japonica HOM05D002468 ORTHO05D009172 3.5e-48 195.7 108 80.6
SGA_v2.0_scaffold258G45770 Striga asiatica HOM05D002468 ORTHO05D009172 7.8e-48 194.5 190 57.4
AagrBONN_evm.TU.Sc2ySwM_344.1577 Anthoceros agrestis HOM05D002468 ORTHO05D009172 1.5e-46 190.3 146 65.8
Glyma.02G090600 Glycine max HOM05D002468 ORTHO05D009172 1.5e-46 190.3 123 69.9
Pp3c16_12110 Physcomitrium patens HOM05D002468 ORTHO05D009172 1.9e-46 189.9 147 60.5
Psat3g206960 Pisum sativum HOM05D002468 ORTHO05D009172 1.9e-46 189.9 155 60.0
Mapoly0061s0100 Marchantia polymorpha HOM05D002468 ORTHO05D009172 1.4e-44 183.7 116 72.4
Ah.06g186920 Amaranthus hybridus HOM05D002468 ORTHO05D009172 2.6e-43 179.5 94 85.1
SMO137G0309 Selaginella moellendorffii HOM05D002468 ORTHO05D009172 3.4e-43 179.1 108 74.1
Cpa.g.sc38.65 Carica papaya HOM05D002468 ORTHO05D009172 4.4e-43 178.7 95 87.4
Pp3c5_13790 Physcomitrium patens HOM05D002468 ORTHO05D009172 3.8e-42 175.6 116 68.1
CBR_g38077 Chara braunii HOM05D002468 ORTHO05D009172 9.3e-41 171.0 118 64.4
Cre12.g534700 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 6.2e-37 158.3 116 60.3
Gohir.A04G101800 Gossypium hirsutum HOM05D002468 ORTHO05D009172 2.0e-35 153.3 203 49.3
arahy.Tifrunner.gnm1.ann1.PEQR69 Arachis hypogaea HOM05D002468 ORTHO05D009172 3.8e-34 149.1 133 54.9
arahy.Tifrunner.gnm1.ann1.QPD63Z Arachis hypogaea HOM05D002468 ORTHO05D009172 3.8e-34 149.1 133 54.9
Hma1.2p1_1436F.1_g283220 Hydrangea macrophylla HOM05D002468 ORTHO05D009172 5.4e-33 145.2 149 53.0
PRCOL_00000716 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 2.0e-27 126.7 109 56.0
THA.LOC104816706 Tarenaya hassleriana HOM05D002468 ORTHO05D009172 2.1e-24 116.7 65 80.0
MCO06G148 Micromonas commoda HOM05D002468 ORTHO05D009172 1.4e-17 94.0 96 50.0
QL02p011811 Quercus lobata HOM05D002468 ORTHO05D009172 4.2e-17 92.4 47 87.2
MD13G1131500 Malus domestica HOM05D002468 ORTHO05D009172 1.0e-15 87.8 47 83.0
MCO11G048 Micromonas commoda HOM05D002468 ORTHO05D009172 3.1e-12 76.3 88 42.0
PRCOL_00003949 Prasinoderma coloniale HOM05D002468 ORTHO05D009172 1.2e-11 74.3 89 44.9
Cre02.g095122 Chlamydomonas reinhardtii HOM05D002468 ORTHO05D009172 7.9e-08 61.6 94 35.1
QL01p019412 Quercus lobata HOM05D002468 ORTHO05D009172 7.9e-08 61.6 70 45.7
ATR0743G264 Amborella trichopoda HOM05D005939 ORTHO05D007412 6.7e-07 58.5 85 40.0
Gohir.A08G059200 Gossypium hirsutum HOM05D007218 ORTHO05D008812 8.7e-07 58.2 91 33.0
Gorai.004G071600 Gossypium raimondii HOM05D007218 ORTHO05D008812 8.7e-07 58.2 91 33.0
MELO3C005979.2 Cucumis melo HOM05D007218 ORTHO05D008812 1.1e-06 57.8 109 29.4
COL.COLO4_12426 Corchorus olitorius HOM05D001866 ORTHO05D001915 1.9e-06 57.0 91 33.0
CsaV3_3G007570 Cucumis sativus L. HOM05D007218 ORTHO05D008812 1.9e-06 57.0 107 29.9
Thecc.01G392800 Theobroma cacao HOM05D007218 ORTHO05D008812 1.9e-06 57.0 91 31.9
TWI38G2333 Tripterygium wilfordii HOM05D005939 ORTHO05D007412 1.9e-06 57.0 85 38.8
MELO3C017776.2 Cucumis melo HOM05D005939 ORTHO05D007412 2.5e-06 56.6 85 40.0
CsaV3_4G002650 Cucumis sativus L. HOM05D005939 ORTHO05D007412 2.5e-06 56.6 85 40.0
ECA238G2261 Erigeron canadensis HOM05D005939 ORTHO05D007412 2.5e-06 56.6 85 37.6
Sed0023662 Sechium edule HOM05D007218 ORTHO05D008812 2.5e-06 56.6 109 29.4
SGA_v2.0_scaffold19G08830 Striga asiatica HOM05D005939 ORTHO05D007412 2.5e-06 56.6 85 40.0
Ah.13g073680 Amaranthus hybridus HOM05D005939 ORTHO05D007412 3.3e-06 56.2 85 40.0
MSTRG.22020 Avicennia marina HOM05D005939 ORTHO05D007412 3.3e-06 56.2 140 30.7
EL10Ac3g06033 Beta vulgaris HOM05D005939 ORTHO05D007412 3.3e-06 56.2 85 40.0
Duzib133G0872 Durio zibethinus HOM05D007218 ORTHO05D008812 3.3e-06 56.2 91 31.9
EL10Ac1g00779 Beta vulgaris HOM05D007218 ORTHO05D008812 4.3e-06 55.8 109 28.4
CiPaw.01G172900 Carya illinoinensis HOM05D005939 ORTHO05D007412 4.3e-06 55.8 143 31.5
ClCG07G015100 Citrullus lanatus HOM05D005939 ORTHO05D007412 4.3e-06 55.8 85 40.0
Migut.N03077 Erythranthe guttata HOM05D005939 ORTHO05D007412 4.3e-06 55.8 87 37.9
Sed0015623 Sechium edule HOM05D005939 ORTHO05D007412 4.3e-06 55.8 85 40.0
Aqoxy2G04151 Aquilegia oxysepala HOM05D005939 ORTHO05D007412 5.7e-06 55.5 86 37.2
AUR62002369 Chenopodium quinoa HOM05D005939 ORTHO05D007412 5.7e-06 55.5 85 38.8
AUR62023817 Chenopodium quinoa HOM05D000031 ORTHO05D007412 5.7e-06 55.5 85 38.8
Lj7A544T36 Lonicera japonica HOM05D007218 ORTHO05D008812 5.7e-06 55.5 109 26.6
Thecc.04G170700 Theobroma cacao HOM05D005939 ORTHO05D007412 5.7e-06 55.5 85 38.8
TAR365G0833 Trochodendron aralioides HOM05D005939 ORTHO05D007412 5.7e-06 55.5 87 37.9
vmacro00653 Vaccinium macrocarpon HOM05D005939 ORTHO05D007412 5.7e-06 55.5 141 31.2
VMungo1127G1625 Vigna mungo HOM05D005939 ORTHO05D007412 5.7e-06 55.5 85 38.8
GSVIVG01038097001 Vitis vinifera HOM05D005939 ORTHO05D007412 5.7e-06 55.5 87 37.9
Cpa.g.sc9.337 Carica papaya HOM05D005939 ORTHO05D007412 7.4e-06 55.1 85 38.8
Duzib212G0518 Durio zibethinus HOM05D005939 ORTHO05D007412 7.4e-06 55.1 85 40.0
ECA240G4247 Erigeron canadensis HOM05D007218 ORTHO05D008812 7.4e-06 55.1 109 28.4
Manes.04G037900 Manihot esculenta HOM05D005939 ORTHO05D007412 7.4e-06 55.1 85 38.8
Os08g0541400 Oryza sativa ssp. japonica HOM05D005939 ORTHO05D007412 7.4e-06 55.1 85 38.8
Actinidia12651 Actinidia chinensis HOM05D007218 ORTHO05D008812 9.7e-06 54.7 91 31.9
Carub.0004s2605 Capsella rubella HOM05D005939 ORTHO05D007412 9.7e-06 54.7 85 40.0
CDE02G1670 Ceratophyllum demersum HOM05D005939 ORTHO05D007412 9.7e-06 54.7 85 38.8
Oeu032137.1 Olea europaea HOM05D005939 ORTHO05D007412 9.7e-06 54.7 85 38.8
Sabra14G0033400 Salix brachista HOM05D007218 ORTHO05D008812 9.7e-06 54.7 109 28.4


User provided reference genes

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