Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G096900 Carya illinoinensis HOM05D005067 ORTHO05D006105 4.5e-49 197.6 99 100.0
CiPaw.06G112100 Carya illinoinensis HOM05D005067 ORTHO05D006105 5.2e-45 184.1 99 90.9
Cfa012979 Carpinus fangiana HOM05D005067 ORTHO05D006105 2.6e-44 181.8 99 88.9
Haze_21349 Corylus avellana HOM05D005067 ORTHO05D006105 3.4e-44 181.4 99 88.9
Haze_21343 Corylus avellana HOM05D005067 ORTHO05D006105 5.7e-44 180.6 99 87.9
Actinidia23110 Actinidia chinensis HOM05D005067 ORTHO05D006105 6.3e-43 177.2 99 85.9
Dinv26521 Davidia involucrata HOM05D005067 ORTHO05D006105 1.4e-42 176.0 99 86.9
TAR723G0001 Trochodendron aralioides HOM05D005067 ORTHO05D006105 5.4e-42 174.1 99 82.8
Hma1.2p1_0738F.1_g211080 Hydrangea macrophylla HOM05D005067 ORTHO05D006105 1.2e-41 172.9 99 83.8
Thecc.09G262100 Theobroma cacao HOM05D005067 ORTHO05D006105 2.7e-41 171.8 99 83.8
Duzib168G1737 Durio zibethinus HOM05D005067 ORTHO05D006105 4.5e-41 171.0 99 84.8
Ca_01855_v3 Cicer arietinum L. HOM05D005067 ORTHO05D006105 5.9e-41 170.6 99 80.8
Oeu003268.1 Olea europaea HOM05D005067 ORTHO05D006105 1.3e-40 169.5 99 82.8
GSVIVG01001135001 Vitis vinifera HOM05D005067 ORTHO05D006105 2.3e-40 168.7 99 82.8
CSS0007870 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 2.9e-40 168.3 99 81.8
TPR.G27257 Trifolium pratense HOM05D005067 ORTHO05D006105 2.9e-40 168.3 99 79.8
MELO3C026758.2 Cucumis melo HOM05D005067 ORTHO05D006105 3.8e-40 167.9 95 85.3
CSS0001472 Camellia sinensis var. sinensis HOM05D005067 ORTHO05D006105 5.0e-40 167.5 99 80.8
Sed0000673 Sechium edule HOM05D005067 ORTHO05D006105 5.0e-40 167.5 95 85.3
Sed0016956 Sechium edule HOM05D005067 ORTHO05D006105 5.0e-40 167.5 95 85.3
arahy.Tifrunner.gnm1.ann1.35C0M2 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.5e-40 167.2 99 80.8
arahy.Tifrunner.gnm1.ann1.WU9C10 Arachis hypogaea HOM05D005067 ORTHO05D006105 6.5e-40 167.2 99 80.8
Gohir.D13G224500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 8.6e-40 166.8 99 81.8
Psat1g160400 Pisum sativum HOM05D005067 ORTHO05D006105 8.6e-40 166.8 99 78.8
Potri.001G071900 Populus trichocarpa HOM05D005067 ORTHO05D006105 8.6e-40 166.8 99 80.8
vmacro05123 Vaccinium macrocarpon HOM05D005067 ORTHO05D006105 8.6e-40 166.8 99 80.8
Duzib150G1019 Durio zibethinus HOM05D005067 ORTHO05D006105 1.1e-39 166.4 99 81.8
Gorai.013G255300 Gossypium raimondii HOM05D005067 ORTHO05D006105 1.5e-39 166.0 99 81.8
Lj3g0015814 Lotus japonicus HOM05D005067 ORTHO05D006105 1.5e-39 166.0 99 77.8
Phvul.009G181800 Phaseolus vulgaris HOM05D005067 ORTHO05D006105 1.5e-39 166.0 95 82.1
Glyma.06G185600 Glycine max HOM05D005067 ORTHO05D006105 1.9e-39 165.6 99 78.8
Gohir.D09G102100 Gossypium hirsutum HOM05D005067 ORTHO05D006105 1.9e-39 165.6 99 81.8
arahy.Tifrunner.gnm1.ann1.S7KJ0A Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-39 165.2 99 79.8
arahy.Tifrunner.gnm1.ann1.V7S8AY Arachis hypogaea HOM05D005067 ORTHO05D006105 2.5e-39 165.2 99 79.8
RcHm_v2.0_Chr5g0041661 Rosa chinensis HOM05D005067 ORTHO05D006105 3.2e-39 164.9 99 80.8
Prupe.4G224700 Prunus persica HOM05D005067 ORTHO05D006105 4.2e-39 164.5 99 78.8
Sp2g18390 Schrenkiella parvula HOM05D005067 ORTHO05D006105 4.2e-39 164.5 99 76.8
Manes.08G098600 Manihot esculenta HOM05D005067 ORTHO05D006105 5.5e-39 164.1 99 82.8
Ciclev10026832m.g Citrus clementina HOM05D005067 ORTHO05D006105 7.2e-39 163.7 97 80.4
Gorai.006G119400 Gossypium raimondii HOM05D005067 ORTHO05D006105 7.2e-39 163.7 93 82.8
Gohir.A13G220500 Gossypium hirsutum HOM05D005067 ORTHO05D006105 9.5e-39 163.3 99 79.8
Medtr2g034290 Medicago truncatula HOM05D005067 ORTHO05D006105 9.5e-39 163.3 95 78.9
CANSAT01G3113 Cannabis sativa HOM05D005067 ORTHO05D006105 1.2e-38 162.9 95 78.9
MD03G1192500 Malus domestica HOM05D005067 ORTHO05D006105 1.2e-38 162.9 99 77.8
MD11G1209000 Malus domestica HOM05D005067 ORTHO05D006105 1.2e-38 162.9 99 78.8
Glyma.04G179100 Glycine max HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 76.8
HanXRQChr05g0134241 Helianthus annuus HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 78.8
Medtr8g012945 Medicago truncatula HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 75.8
Potri.003G159100 Populus trichocarpa HOM05D005067 ORTHO05D006105 1.6e-38 162.5 99 77.8
FAN25G2289 Fragaria x ananassa HOM05D005067 ORTHO05D006105 2.8e-38 161.8 99 78.8
FvH4_3g23621 Fragaria vesca HOM05D005067 ORTHO05D006105 4.7e-38 161.0 99 78.8
FAN16G3498 Fragaria x ananassa HOM05D005067 ORTHO05D006105 4.7e-38 161.0 99 78.8
arahy.Tifrunner.gnm1.ann1.75T26B Arachis hypogaea HOM05D005067 ORTHO05D006105 6.1e-38 160.6 99 77.8
arahy.Tifrunner.gnm1.ann1.MX8VGA Arachis hypogaea HOM05D005067 ORTHO05D006105 6.1e-38 160.6 99 77.8
THA.LOC104807181 Tarenaya hassleriana HOM05D005067 ORTHO05D006105 6.1e-38 160.6 99 77.8
ATR0582G276 Amborella trichopoda HOM05D005067 ORTHO05D006105 8.0e-38 160.2 99 74.7
BcaB07g30049 Brassica carinata HOM05D005067 ORTHO05D006105 8.0e-38 160.2 99 74.7
BcaC03g17619 Brassica carinata HOM05D005067 ORTHO05D006105 8.0e-38 160.2 99 74.7
Aa31LG3G14180 Aethionema arabicum HOM05D005067 ORTHO05D006105 1.8e-37 159.1 95 75.8
Lsat_1_v5_gn_1_32740 Lactuca sativa HOM05D005067 ORTHO05D006105 1.8e-37 159.1 99 77.8
C02p56190 Brassica napus HOM05D005067 ORTHO05D006105 2.3e-37 158.7 99 72.7
arahy.Tifrunner.gnm1.ann1.4NI9N6 Arachis hypogaea HOM05D005067 ORTHO05D006105 3.0e-37 158.3 99 76.8
A02p37170 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 73.7
A06p39480 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 72.7
C07p38790 Brassica napus HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 72.7
BolC7t44398H Brassica oleracea HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 72.7
BraA02t08703Z Brassica rapa HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 73.7
BraA06t26863Z Brassica rapa HOM05D005067 ORTHO05D006105 4.0e-37 157.9 99 72.7
BcaC04g23800 Brassica carinata HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 72.7
BolC9t53383H Brassica oleracea HOM05D005067 ORTHO05D006105 5.2e-37 157.5 99 72.7
COL.COLO4_25264 Corchorus olitorius HOM05D005067 ORTHO05D006105 5.2e-37 157.5 97 76.3
Carub.0014s0003 Capsella rubella HOM05D005067 ORTHO05D006105 8.8e-37 156.8 95 76.8
Sabra03G0115500 Salix brachista HOM05D005067 ORTHO05D006105 8.8e-37 156.8 93 78.5
Aqoxy5G02883 Aquilegia oxysepala HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 72.7
arahy.Tifrunner.gnm1.ann1.48UY8P Arachis hypogaea HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 75.8
FAN11G0656 Fragaria x ananassa HOM05D001534 ORTHO05D003503 1.2e-36 156.4 96 77.1
Hund07355 Selenicereus undatus HOM05D005067 ORTHO05D006105 1.2e-36 156.4 99 73.7
C09p04540 Brassica napus HOM05D005067 ORTHO05D006105 1.5e-36 156.0 99 71.7
FAN21G3427 Fragaria x ananassa HOM05D002614 ORTHO05D002794 1.5e-36 156.0 93 78.5
TPR.G17128 Trifolium pratense HOM05D005067 ORTHO05D006105 1.5e-36 156.0 99 72.7
AUR62013622 Chenopodium quinoa HOM05D005067 ORTHO05D006105 2.0e-36 155.6 99 72.7
Thhalv10005189m.g Eutrema salsugineum HOM05D005067 ORTHO05D006105 2.6e-36 155.2 99 73.7
Atru.chr12.1484 Acer truncatum HOM05D005067 ORTHO05D006105 5.7e-36 154.1 94 79.8
AL8G19880 Arabidopsis lyrata HOM05D005067 ORTHO05D006105 5.7e-36 154.1 95 74.7
AUR62004226 Chenopodium quinoa HOM05D005067 ORTHO05D006105 5.7e-36 154.1 99 71.7
Lalb_Chr12g0209921 Lupinus albus HOM05D005067 ORTHO05D006105 7.5e-36 153.7 91 76.9
Hund21907 Selenicereus undatus HOM05D005067 ORTHO05D006105 9.8e-36 153.3 113 67.3
AT5G47890 Arabidopsis thaliana HOM05D005067 ORTHO05D006105 1.7e-35 152.5 95 73.7
Sabra01G0050500 Salix brachista HOM05D005067 ORTHO05D006105 2.2e-35 152.1 120 65.8
HPP92_001280 Vanilla planifolia HOM05D005067 ORTHO05D006105 2.2e-35 152.1 99 73.7
EL10Ac1g00908 Beta vulgaris HOM05D005067 ORTHO05D006105 4.9e-35 151.0 104 70.2
CARHR184460 Cardamine hirsuta HOM05D005067 ORTHO05D006105 4.9e-35 151.0 95 72.6
Nitab4.5_0001953g0110 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.9e-35 151.0 99 73.7
HanXRQChr08g0228171 Helianthus annuus HOM05D005067 ORTHO05D006105 6.3e-35 150.6 99 72.7
PSO541G3634 Papaver somniferum HOM05D005067 ORTHO05D006105 6.3e-35 150.6 99 69.7
ECA238G3917 Erigeron canadensis HOM05D005067 ORTHO05D006105 1.1e-34 149.8 90 80.0
TWI18G1269 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 1.1e-34 149.8 97 74.2
arahy.Tifrunner.gnm1.ann1.XUTR46 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.8e-34 149.1 99 73.7
MSTRG.18590 Avicennia marina HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 72.7
Nitab4.5_0009655g0030 Nicotiana tabacum HOM05D005067 ORTHO05D006105 2.4e-34 148.7 95 74.7
Solyc06g075810.3 Solanum lycopersicum HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 73.7
Sopen06g032240 Solanum pennellii HOM05D005067 ORTHO05D006105 2.4e-34 148.7 99 73.7
PSO675G6660 Papaver somniferum HOM05D005067 ORTHO05D006105 3.1e-34 148.3 99 68.7
BcaB04g19540 Brassica carinata HOM05D005067 ORTHO05D006105 4.1e-34 147.9 99 67.7
PGSC0003DMG400030398 Solanum tuberosum HOM05D005067 ORTHO05D006105 4.1e-34 147.9 97 74.2
Nitab4.5_0002882g0010 Nicotiana tabacum HOM05D005067 ORTHO05D006105 7.0e-34 147.1 99 72.7
PGR102G0153 Punica granatum HOM05D005067 ORTHO05D006105 7.0e-34 147.1 92 72.8
Migut.D02119 Erythranthe guttata HOM05D005067 ORTHO05D006105 1.2e-33 146.4 95 74.7
CDE02G2760 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 2.0e-33 145.6 96 68.8
Peaxi162Scf00679g00133 Petunia axillaris HOM05D005067 ORTHO05D006105 4.5e-33 144.4 95 71.6
PGSC0003DMG400015529 Solanum tuberosum HOM05D005067 ORTHO05D006105 5.9e-33 144.1 99 69.7
Cc01_g12390 Coffea canephora HOM05D005067 ORTHO05D006105 7.8e-33 143.7 99 68.7
BolC2t11675H Brassica oleracea HOM05D005067 ORTHO05D006105 2.3e-32 142.1 135 54.8
ClCG10G013160 Citrullus lanatus HOM05D005067 ORTHO05D006105 2.3e-32 142.1 146 54.1
TWI36G0882 Tripterygium wilfordii HOM05D005067 ORTHO05D006105 8.6e-32 140.2 98 69.4
Zm00001eb283340 Zea mays HOM05D005067 ORTHO05D006105 1.1e-31 139.8 97 64.9
CDE02G0654 Ceratophyllum demersum HOM05D005067 ORTHO05D006105 4.3e-31 137.9 92 67.4
MBI11_g22246_MAGBIO Magnolia biondii HOM05D005067 ORTHO05D006105 4.3e-31 137.9 91 72.5
Zm00001eb345800 Zea mays HOM05D005067 ORTHO05D006105 1.2e-30 136.3 97 63.9
unitig_736.g22438 Utricularia gibba HOM05D005067 ORTHO05D006105 1.0e-29 133.3 95 67.4
Eucgr.B03411 Eucalyptus grandis HOM05D005067 ORTHO05D006105 1.4e-29 132.9 102 62.7
Actinidia14133 Actinidia chinensis HOM05D005067 ORTHO05D006105 4.4e-28 127.9 70 84.3
Gohir.A09G105300 Gossypium hirsutum HOM05D005067 ORTHO05D006105 4.4e-28 127.9 70 82.9
Mapoly0012s0093 Marchantia polymorpha HOM05D005067 ORTHO05D006105 1.7e-27 125.9 97 60.8
TAR718G0005 Trochodendron aralioides HOM05D005067 ORTHO05D006105 1.7e-27 125.9 71 83.1
Glyma.06G272300 Glycine max HOM05D005067 ORTHO05D006105 3.7e-27 124.8 75 74.7
Pp3c20_8510 Physcomitrium patens HOM05D005067 ORTHO05D006105 5.4e-26 120.9 91 60.4
Psat0s3432g0200 Pisum sativum HOM05D005067 ORTHO05D006105 7.0e-26 120.6 68 77.9
Lalb_Chr07g0194241 Lupinus albus HOM05D005067 ORTHO05D006105 2.0e-25 119.0 64 82.8
QL03p047951 Quercus lobata HOM05D005067 ORTHO05D006105 4.6e-25 117.9 66 84.8
SalBow3G2136 Salvia bowleyana HOM05D005067 ORTHO05D006105 1.0e-24 116.7 99 64.6
arahy.Tifrunner.gnm1.ann1.8NA9N0 Arachis hypogaea HOM05D005067 ORTHO05D006105 1.7e-24 115.9 103 61.2
arahy.Tifrunner.gnm1.ann1.AQUA2C Arachis hypogaea HOM05D005067 ORTHO05D006105 2.3e-24 115.5 71 78.9
arahy.Tifrunner.gnm1.ann1.P4C6EV Arachis hypogaea HOM05D005067 ORTHO05D006105 6.6e-24 114.0 68 75.0
SMO119G0159 Selaginella moellendorffii HOM05D005067 ORTHO05D006105 6.6e-24 114.0 91 58.2
Glyma.02G198800 Glycine max HOM05D005067 ORTHO05D006105 2.5e-23 112.1 64 78.1
AagrBONN_evm.TU.Sc2ySwM_117.283 Anthoceros agrestis HOM05D005067 ORTHO05D006105 2.8e-22 108.6 82 59.8
Sc03g0003970 Simmondsia chinensis HOM05D005067 ORTHO05D006105 3.6e-22 108.2 64 75.0
SEGI_29862 Sequoiadendron giganteum HOM05D005067 ORTHO05D006105 3.1e-21 105.1 64 71.9
Os04g0310500 Oryza sativa ssp. japonica HOM05D005067 ORTHO05D006105 4.4e-20 101.3 64 68.8
DCAR_005307 Daucus carota HOM05D005067 ORTHO05D006105 9.8e-20 100.1 62 72.6
Cre16.g679500 Chlamydomonas reinhardtii HOM05D005067 ORTHO05D006105 1.7e-19 99.4 96 46.9
SHI02599 Sapria himalayana HOM05D005067 ORTHO05D006105 2.2e-19 99.0 67 67.2
unitig_899.g14896 Utricularia gibba HOM05D005067 ORTHO05D006105 4.6e-17 91.3 63 68.3
Pp3c23_15790 Physcomitrium patens HOM05D005067 ORTHO05D006105 3.0e-16 88.6 61 63.9
PRCOL_00006750 Prasinoderma coloniale HOM05D005067 ORTHO05D006105 8.9e-13 77.0 90 40.0
Nitab4.5_0009487g0020 Nicotiana tabacum HOM05D005067 ORTHO05D006105 4.4e-12 74.7 95 49.5
MCO03G395 Micromonas commoda HOM05D005067 ORTHO05D006105 5.8e-12 74.3 81 45.7


User provided reference genes

Program Settings