Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G092600 Carya illinoinensis HOM05D007709 ORTHO05D009577 3.4e-73 278.1 129 100.0
Haze_02011 Corylus avellana HOM05D007709 ORTHO05D009577 1.0e-29 133.7 86 72.1
Cfa005362 Carpinus fangiana HOM05D007709 ORTHO05D009577 2.7e-25 119.0 76 71.1
QL03p016621 Quercus lobata HOM05D007709 ORTHO05D009577 3.8e-24 115.2 86 62.8
QL11p056199 Quercus lobata HOM05D007709 ORTHO05D009577 3.8e-24 115.2 86 62.8
Peaxi162Scf00362g00133 Petunia axillaris HOM05D007709 ORTHO05D009577 4.0e-21 105.1 83 62.7
Migut.N01357 Erythranthe guttata HOM05D007709 ORTHO05D009577 8.3e-19 97.4 85 57.6
HanXRQChr16g0501351 Helianthus annuus HOM05D007709 ORTHO05D009577 1.1e-18 97.1 83 55.4
Thecc.02G145600 Theobroma cacao HOM05D007709 ORTHO05D009577 1.0e-16 90.5 82 52.4
CANSAT25G2121 Cannabis sativa HOM05D007709 ORTHO05D009577 1.7e-16 89.7 67 58.2
Nn5g30992 Nelumbo nucifera HOM05D007709 ORTHO05D009577 3.0e-16 89.0 82 51.2
Prupe.8G179200 Prunus persica HOM05D007709 ORTHO05D009577 3.0e-16 89.0 75 57.3
Potri.009G167700 Populus trichocarpa HOM05D007709 ORTHO05D009577 1.1e-15 87.0 86 53.5
Aqoxy6G01622 Aquilegia oxysepala HOM05D007709 ORTHO05D009577 1.5e-15 86.7 86 52.3
CSS0014347 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 1.9e-15 86.3 83 56.6
Atru.chr5.3536 Acer truncatum HOM05D007709 ORTHO05D009577 2.5e-15 85.9 81 53.1
Haze_22002 Corylus avellana HOM05D022555 ORTHO05D009577 7.3e-15 84.3 68 58.8
Cfa005363 Carpinus fangiana HOM05D007709 ORTHO05D009577 1.6e-14 83.2 76 52.6
Medtr8g012330 Medicago truncatula HOM05D001671 ORTHO05D001844 1.6e-14 83.2 117 41.9
COL.COLO4_34305 Corchorus olitorius HOM05D007709 ORTHO05D009577 4.7e-14 81.6 71 54.9
Lj3g0026575 Lotus japonicus HOM05D007709 ORTHO05D009577 4.7e-14 81.6 80 51.2
QL03p016612 Quercus lobata HOM05D007709 ORTHO05D009577 6.2e-14 81.3 71 50.7
QL11p056189 Quercus lobata HOM05D007709 ORTHO05D009577 6.2e-14 81.3 71 50.7
QL11p056219 Quercus lobata HOM05D007709 ORTHO05D009577 6.2e-14 81.3 71 50.7
Carub.0004s2433 Capsella rubella HOM05D007709 ORTHO05D009577 8.0e-14 80.9 89 49.4
Sc14g0002460 Simmondsia chinensis HOM05D007709 ORTHO05D009577 8.0e-14 80.9 76 51.3
Cc04_g09140 Coffea canephora HOM05D007709 ORTHO05D009577 1.1e-13 80.5 68 54.4
Manes.11G110300 Manihot esculenta HOM05D007709 ORTHO05D009577 1.4e-13 80.1 69 50.7
TWI31G1411 Tripterygium wilfordii HOM05D007709 ORTHO05D009577 1.4e-13 80.1 70 51.4
Ciclev10029706m.g Citrus clementina HOM05D007709 ORTHO05D009577 1.8e-13 79.7 73 56.2
AL4G13130 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 2.3e-13 79.3 71 52.1
AT2G23240 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 2.3e-13 79.3 71 52.1
QL03p016617 Quercus lobata HOM05D007709 ORTHO05D009577 3.1e-13 79.0 70 50.0
RcHm_v2.0_Chr6g0280851 Rosa chinensis HOM05D007709 ORTHO05D009577 4.0e-13 78.6 69 53.6
BcaC01g04855 Brassica carinata HOM05D007709 ORTHO05D009577 5.2e-13 78.2 74 45.9
C03p33100 Brassica napus HOM05D007709 ORTHO05D009577 5.2e-13 78.2 74 45.9
BolC3t15636H Brassica oleracea HOM05D007709 ORTHO05D009577 5.2e-13 78.2 74 45.9
CAN.G1725.3 Capsicum annuum HOM05D007709 ORTHO05D009577 5.2e-13 78.2 70 52.9
DCAR_026620 Daucus carota HOM05D007709 ORTHO05D009577 1.2e-12 77.0 77 51.9
Nitab4.5_0000783g0120 Nicotiana tabacum HOM05D007709 ORTHO05D009577 1.2e-12 77.0 69 58.0
QL11p056180 Quercus lobata HOM05D007709 ORTHO05D009577 1.5e-12 76.6 64 53.1
Carub.0004s0246 Capsella rubella HOM05D007709 ORTHO05D009577 2.0e-12 76.3 80 43.8
Rhsim05G0047200 Rhododendron simsii HOM05D007709 ORTHO05D009577 2.0e-12 76.3 85 47.1
Sp4g00020 Schrenkiella parvula HOM05D007709 ORTHO05D009577 2.0e-12 76.3 75 49.3
A03p27450 Brassica napus HOM05D007709 ORTHO05D009577 4.4e-12 75.1 74 44.6
BraA03t11957Z Brassica rapa HOM05D007709 ORTHO05D009577 4.4e-12 75.1 74 44.6
Lalb_Chr07g0194411 Lupinus albus HOM05D007709 ORTHO05D009577 4.4e-12 75.1 76 44.7
Ah.01g017550 Amaranthus hybridus HOM05D007709 ORTHO05D009577 5.8e-12 74.7 75 46.7
Cpa.g.sc60.30 Carica papaya HOM05D007709 ORTHO05D009577 5.8e-12 74.7 70 48.6
Thhalv10000588m.g Eutrema salsugineum HOM05D007709 ORTHO05D009577 5.8e-12 74.7 74 51.4
Thecc.02G145500 Theobroma cacao HOM05D007709 ORTHO05D009577 9.8e-12 73.9 70 52.9
AT2G42000 Arabidopsis thaliana HOM05D007709 ORTHO05D009577 1.7e-11 73.2 75 45.3
Os10g0542100 Oryza sativa ssp. japonica HOM05D007709 ORTHO05D009577 1.7e-11 73.2 62 51.6
AL4G40360 Arabidopsis lyrata HOM05D007709 ORTHO05D009577 6.4e-11 71.2 73 45.2
PSO541G6469 Papaver somniferum HOM05D007709 ORTHO05D009577 8.3e-11 70.9 71 50.7
BcaB01g02955 Brassica carinata HOM05D007709 ORTHO05D009577 1.4e-10 70.1 74 40.5
DCAR_026621 Daucus carota HOM05D000628 ORTHO05D009577 1.9e-10 69.7 65 50.8
Eucgr.I01530 Eucalyptus grandis HOM05D007709 ORTHO05D009577 3.2e-10 68.9 58 51.7
Glyma.18G157800 Glycine max HOM05D007709 ORTHO05D009577 3.2e-10 68.9 76 47.4
Gohir.D01G011700 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.2e-10 68.9 83 42.2
PGR142G3111 Punica granatum HOM05D007709 ORTHO05D009577 4.1e-10 68.6 64 48.4
SalBow5G1409 Salvia bowleyana HOM05D007709 ORTHO05D009577 5.4e-10 68.2 83 42.2
SalBow5G2601 Salvia bowleyana HOM05D007709 ORTHO05D009577 5.4e-10 68.2 83 42.2
CARHR292840 Cardamine hirsuta HOM05D007709 ORTHO05D009577 7.0e-10 67.8 69 50.7
Gorai.002G013700 Gossypium raimondii HOM05D007709 ORTHO05D009577 7.0e-10 67.8 62 50.0
arahy.Tifrunner.gnm1.ann1.0QS5M4 Arachis hypogaea HOM05D007709 ORTHO05D009577 1.2e-09 67.0 78 42.3
arahy.Tifrunner.gnm1.ann1.9G47NZ Arachis hypogaea HOM05D007709 ORTHO05D009577 1.2e-09 67.0 85 41.2
MD05G1135300 Malus domestica HOM05D007709 ORTHO05D009577 1.2e-09 67.0 68 54.4
Sed0006301 Sechium edule HOM05D007709 ORTHO05D009577 1.6e-09 66.6 71 47.9
FAN15G1429 Fragaria x ananassa HOM05D007709 ORTHO05D009577 7.8e-09 64.3 102 41.2
THA.LOC104807798 Tarenaya hassleriana HOM05D007709 ORTHO05D009577 7.8e-09 64.3 59 49.2
MELO3C013494.2 Cucumis melo HOM05D007709 ORTHO05D009577 1.7e-08 63.2 71 46.5
CSS0018079 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.0e-08 62.4 79 41.8
CSS0032875 Camellia sinensis var. sinensis HOM05D007709 ORTHO05D009577 3.0e-08 62.4 79 41.8
Gohir.A04G112024 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.0e-08 62.4 56 57.1
Gohir.D04G152500 Gossypium hirsutum HOM05D007709 ORTHO05D009577 3.0e-08 62.4 56 57.1
Gorai.012G139300 Gossypium raimondii HOM05D007709 ORTHO05D009577 3.0e-08 62.4 56 57.1
FAN24G0243 Fragaria x ananassa HOM05D007709 ORTHO05D009577 1.1e-07 60.5 83 41.0
Psat3g150320 Pisum sativum HOM05D007709 ORTHO05D009577 3.3e-07 58.9 61 49.2
TPR.G29157 Trifolium pratense HOM05D007709 ORTHO05D009577 4.3e-07 58.5 64 46.9
HPP92_022159 Vanilla planifolia HOM05D007709 ORTHO05D009577 3.6e-06 55.5 77 42.9
Sopen01g054290 Solanum pennellii HOM05D007709 ORTHO05D009577 8.1e-06 54.3 60 43.3


User provided reference genes

Program Settings