Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G087400 Carya illinoinensis HOM05D006255 ORTHO05D008014 5.3e-77 291.6 230 100.0
Dinv14143 Davidia involucrata HOM05D006255 ORTHO05D008014 2.2e-70 269.6 230 88.7
Atru.chr5.3479 Acer truncatum HOM05D006255 ORTHO05D008014 5.4e-69 265.0 230 78.3
Ciclev10029213m.g Citrus clementina HOM05D006255 ORTHO05D008014 1.6e-68 263.5 230 73.5
PGR142G2886 Punica granatum HOM05D006255 ORTHO05D008014 3.5e-68 262.3 230 77.8
CANSAT25G2216 Cannabis sativa HOM05D006255 ORTHO05D008014 7.7e-68 261.2 230 87.4
Hma1.2p1_0163F.1_g072870 Hydrangea macrophylla HOM05D006255 ORTHO05D008014 1.0e-67 260.8 228 82.9
ClCG02G003730 Citrullus lanatus HOM05D006255 ORTHO05D008014 1.7e-67 260.0 229 76.0
MELO3C013309.2 Cucumis melo HOM05D006255 ORTHO05D008014 2.3e-67 259.6 228 77.6
CsaV3_7G001410 Cucumis sativus L. HOM05D006255 ORTHO05D008014 2.9e-67 259.2 228 73.7
Manes.11G100600 Manihot esculenta HOM05D006255 ORTHO05D008014 5.0e-67 258.5 230 71.7
Lj9A402T69 Lonicera japonica HOM05D006255 ORTHO05D008014 1.9e-66 256.5 227 71.8
Sed0013069 Sechium edule HOM05D006255 ORTHO05D008014 1.9e-66 256.5 228 72.4
Duzib248G1128 Durio zibethinus HOM05D006255 ORTHO05D008014 3.3e-66 255.8 230 73.5
Eucgr.I01476 Eucalyptus grandis HOM05D006255 ORTHO05D008014 4.2e-66 255.4 227 74.4
THA.LOC104804084 Tarenaya hassleriana HOM05D006255 ORTHO05D008014 4.2e-66 255.4 230 74.8
TWI31G0945 Tripterygium wilfordii HOM05D006255 ORTHO05D008014 5.5e-66 255.0 230 72.6
Sed0016506 Sechium edule HOM05D006255 ORTHO05D008014 7.2e-66 254.6 228 61.0
Actinidia20544 Actinidia chinensis HOM05D006255 ORTHO05D008014 9.5e-66 254.2 228 72.4
Actinidia18024 Actinidia chinensis HOM05D006255 ORTHO05D008014 1.6e-65 253.4 228 78.5
CSS0039919 Camellia sinensis var. sinensis HOM05D006255 ORTHO05D008014 2.1e-65 253.1 230 68.3
TAR625G0439 Trochodendron aralioides HOM05D006255 ORTHO05D008014 2.1e-65 253.1 230 65.7
vmacro02304 Vaccinium macrocarpon HOM05D006255 ORTHO05D008014 2.1e-65 253.1 227 68.3
Nn5g30887 Nelumbo nucifera HOM05D006255 ORTHO05D008014 4.7e-65 251.9 230 67.4
Cc09_g10450 Coffea canephora HOM05D006255 ORTHO05D008014 2.3e-64 249.6 225 77.8
arahy.Tifrunner.gnm1.ann1.K7U5ID Arachis hypogaea HOM05D006255 ORTHO05D008014 5.2e-64 248.4 231 72.3
Thecc.02G052300 Theobroma cacao HOM05D006255 ORTHO05D008014 6.8e-64 248.1 230 77.4
arahy.Tifrunner.gnm1.ann1.5E63QU Arachis hypogaea HOM05D006255 ORTHO05D008014 1.5e-63 246.9 231 71.9
MSTRG.16938 Avicennia marina HOM05D006255 ORTHO05D008014 1.5e-63 246.9 229 74.2
Gohir.D01G162900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.6e-63 246.1 230 73.0
Gorai.002G202100 Gossypium raimondii HOM05D006255 ORTHO05D008014 2.6e-63 246.1 230 73.0
QL11p053294 Quercus lobata HOM05D006255 ORTHO05D008014 2.6e-63 246.1 228 87.7
Cfa005320 Carpinus fangiana HOM05D006255 ORTHO05D010524 5.7e-63 245.0 222 82.0
Gohir.D12G037200 Gossypium hirsutum HOM05D006255 ORTHO05D008014 7.5e-63 244.6 230 78.7
Gorai.008G038300 Gossypium raimondii HOM05D006255 ORTHO05D008014 7.5e-63 244.6 230 80.0
Aqoxy5G01073 Aquilegia oxysepala HOM05D006255 ORTHO05D008014 9.8e-63 244.2 231 71.9
COL.COLO4_18000 Corchorus olitorius HOM05D006255 ORTHO05D008014 9.8e-63 244.2 226 80.5
Prupe.8G172600 Prunus persica HOM05D006255 ORTHO05D008014 9.8e-63 244.2 230 72.2
Solyc01g111940.4 Solanum lycopersicum HOM05D006255 ORTHO05D008014 1.7e-62 243.4 229 72.1
MSTRG.19958 Avicennia marina HOM05D006255 ORTHO05D008014 2.2e-62 243.0 229 72.9
Nitab4.5_0001215g0050 Nicotiana tabacum HOM05D006255 ORTHO05D008014 3.7e-62 242.3 229 81.2
Sopen01g053990 Solanum pennellii HOM05D006255 ORTHO05D008014 3.7e-62 242.3 229 71.6
Potri.009G140200 Populus trichocarpa HOM05D006255 ORTHO05D008014 4.9e-62 241.9 230 74.8
Gohir.A12G035500 Gossypium hirsutum HOM05D006255 ORTHO05D008014 8.3e-62 241.1 230 70.4
Nitab4.5_0003603g0130 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.4e-61 240.4 225 76.4
MBI05_g35101_MAGBIO Magnolia biondii HOM05D006255 ORTHO05D008014 7.0e-61 238.0 226 65.9
Glyma.06G001200 Glycine max HOM05D006255 ORTHO05D008014 2.7e-60 236.1 230 78.7
Nitab4.5_0001506g0010 Nicotiana tabacum HOM05D006255 ORTHO05D008014 4.5e-60 235.3 226 77.0
Glyma.04G001700 Glycine max HOM05D006255 ORTHO05D008014 7.8e-60 234.6 230 83.0
PGSC0003DMG401018633 Solanum tuberosum HOM05D006255 ORTHO05D008014 7.8e-60 234.6 225 69.3
Cpa.g.sc20.136 Carica papaya HOM05D006255 ORTHO05D008014 1.3e-59 233.8 227 74.4
MD10G1131800 Malus domestica HOM05D006255 ORTHO05D008014 1.7e-59 233.4 230 77.0
TPR.G38579 Trifolium pratense HOM05D006255 ORTHO05D008014 1.7e-59 233.4 228 78.5
ATR0661G177 Amborella trichopoda HOM05D006255 ORTHO05D008014 2.3e-59 233.0 226 67.7
Peaxi162Scf00362g00349 Petunia axillaris HOM05D006255 ORTHO05D008014 2.3e-59 233.0 227 78.9
SGA_v2.0_scaffold32G13327 Striga asiatica HOM05D006255 ORTHO05D008014 2.9e-59 232.6 229 75.5
Lsat_1_v5_gn_8_122201 Lactuca sativa HOM05D006255 ORTHO05D008014 6.6e-59 231.5 225 76.0
ECA233G3172 Erigeron canadensis HOM05D006255 ORTHO05D008014 8.6e-59 231.1 228 71.9
HanXRQChr16g0527781 Helianthus annuus HOM05D006255 ORTHO05D008014 1.1e-58 230.7 229 74.2
Nitab4.5_0001629g0040 Nicotiana tabacum HOM05D006255 ORTHO05D008014 1.5e-58 230.3 229 75.5
PSO675G3819 Papaver somniferum HOM05D006255 ORTHO05D008014 1.5e-58 230.3 230 76.5
MD05G1128500 Malus domestica HOM05D006255 ORTHO05D008014 1.9e-58 229.9 230 80.4
SalBow1G8078 Salvia bowleyana HOM05D006255 ORTHO05D010524 4.3e-58 228.8 228 78.5
PSO541G1652 Papaver somniferum HOM05D006255 ORTHO05D008014 7.3e-58 228.0 230 79.6
Oeu029013.1 Olea europaea HOM05D006255 ORTHO05D008014 9.5e-58 227.6 226 71.2
Psat5g000920 Pisum sativum HOM05D006255 ORTHO05D008014 1.6e-57 226.9 230 77.8
Sabra09G0108900 Salix brachista HOM05D006255 ORTHO05D008014 2.8e-57 226.1 259 71.0
Aa31LG9G40 Aethionema arabicum HOM05D006255 ORTHO05D008014 8.0e-57 224.6 249 69.1
Nn6g31846 Nelumbo nucifera HOM05D006255 ORTHO05D008014 1.0e-56 224.2 230 68.7
Aa31LG7G15760 Aethionema arabicum HOM05D007460 ORTHO05D009396 2.3e-56 223.0 245 68.6
Ah.01g007960 Amaranthus hybridus HOM05D006255 ORTHO05D008014 4.0e-56 222.2 230 73.5
CDE02G2216 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 5.2e-56 221.9 230 70.4
Medtr3g118350 Medicago truncatula HOM05D006255 ORTHO05D008014 8.9e-56 221.1 227 67.4
unitig_0.g812 Utricularia gibba HOM05D006255 ORTHO05D008014 1.2e-55 220.7 225 70.7
Phvul.009G117000 Phaseolus vulgaris HOM05D006255 ORTHO05D008014 2.0e-55 219.9 230 67.0
Carub.0001s1596 Capsella rubella HOM05D006255 ORTHO05D008014 5.8e-55 218.4 228 68.4
Ca_15278_v3 Cicer arietinum L. HOM05D006255 ORTHO05D008014 1.3e-54 217.2 228 78.9
EL10Ac9g21307 Beta vulgaris HOM05D006255 ORTHO05D008014 6.4e-54 214.9 228 68.4
Duzib132G0230 Durio zibethinus HOM05D006255 ORTHO05D008014 2.4e-53 213.0 230 82.6
Lj4g0004587 Lotus japonicus HOM05D006255 ORTHO05D008014 4.1e-53 212.2 231 72.7
BcaB03g14828 Brassica carinata HOM05D006255 ORTHO05D008014 5.4e-53 211.8 228 73.2
AL1G28330 Arabidopsis lyrata HOM05D006255 ORTHO05D008014 9.2e-53 211.1 228 67.1
FvH4_2g15950 Fragaria vesca HOM05D006255 ORTHO05D008014 2.7e-52 209.5 227 78.4
FAN15G2553 Fragaria x ananassa HOM05D006255 ORTHO05D008014 2.7e-52 209.5 227 74.9
FAN24G2083 Fragaria x ananassa HOM05D006255 ORTHO05D008014 4.6e-52 208.8 228 78.1
FAN27G1328 Fragaria x ananassa HOM05D006255 ORTHO05D008014 1.3e-51 207.2 228 77.2
Lalb_Chr08g0246771 Lupinus albus HOM05D006255 ORTHO05D008014 3.0e-51 206.1 233 72.5
Os04g0561600 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 3.0e-51 206.1 235 58.7
RcHm_v2.0_Chr6g0279491 Rosa chinensis HOM05D006255 ORTHO05D008014 3.9e-51 205.7 226 77.4
CARHR016680 Cardamine hirsuta HOM05D006255 ORTHO05D008014 8.6e-51 204.5 228 70.6
Sc08g0002620 Simmondsia chinensis HOM05D006255 ORTHO05D008014 4.3e-50 202.2 230 66.1
C06p44610 Brassica napus HOM05D002002 ORTHO05D008711 5.6e-50 201.8 226 78.8
BolC6t39525H Brassica oleracea HOM05D006255 ORTHO05D008014 5.6e-50 201.8 226 78.8
Haze_02065 Corylus avellana HOM05D006255 ORTHO05D008014 7.3e-50 201.4 331 55.3
BraA07t31267Z Brassica rapa HOM05D006255 ORTHO05D008014 2.1e-49 199.9 226 78.8
VMungo1309G1654 Vigna mungo HOM05D006255 ORTHO05D008014 2.8e-49 199.5 230 74.8
A07p37050 Brassica napus HOM05D002002 ORTHO05D008711 4.7e-49 198.7 226 78.3
Zm00001eb074070 Zea mays HOM05D006255 ORTHO05D008014 6.2e-49 198.4 237 67.9
Gohir.A01G171900 Gossypium hirsutum HOM05D006255 ORTHO05D008014 3.1e-48 196.1 152 67.1
BcaB03g14827 Brassica carinata HOM05D002002 ORTHO05D008711 2.6e-47 193.0 226 75.2
HPP92_025891 Vanilla planifolia HOM05D006255 ORTHO05D008014 7.5e-47 191.4 230 52.2
AagrBONN_evm.TU.Sc2ySwM_368.1212 Anthoceros agrestis HOM05D006255 ORTHO05D008014 2.2e-46 189.9 228 62.3
Os03g0131800 Oryza sativa ssp. japonica HOM05D006255 ORTHO05D008014 1.1e-45 187.6 230 63.5
Sp4g00050 Schrenkiella parvula HOM05D006255 ORTHO05D008014 1.4e-45 187.2 227 67.0
Pp3c11_730 Physcomitrium patens HOM05D006255 ORTHO05D008014 1.6e-44 183.7 228 61.8
Pp3c11_731 Physcomitrium patens HOM05D006255 ORTHO05D008014 2.7e-44 183.0 228 61.8
AT1G16210 Arabidopsis thaliana HOM05D006255 ORTHO05D008014 3.5e-44 182.6 228 59.6
Mapoly0058s0055 Marchantia polymorpha HOM05D006255 ORTHO05D008014 1.0e-43 181.0 226 57.5
HPP92_022389 Vanilla planifolia HOM05D006255 ORTHO05D008014 3.9e-43 179.1 223 46.2
CBR_g61263 Chara braunii HOM05D006255 ORTHO05D008014 8.6e-43 177.9 226 49.6
SMO119G0083 Selaginella moellendorffii HOM05D006255 ORTHO05D008014 1.5e-42 177.2 230 45.7
Pp3c7_26990 Physcomitrium patens HOM05D006255 ORTHO05D008014 9.5e-42 174.5 228 56.1
AUR62009986 Chenopodium quinoa HOM05D006255 ORTHO05D008014 2.3e-40 169.9 226 57.5
Lj5C174T15 Lonicera japonica HOM05D006255 ORTHO05D008014 2.6e-39 166.4 226 68.1
CDE09G0466 Ceratophyllum demersum HOM05D006255 ORTHO05D008014 1.7e-38 163.7 95 82.1
Ah.01g023450 Amaranthus hybridus HOM05D000939 ORTHO05D000745 3.0e-35 152.9 211 65.4
CAN.G1235.32 Capsicum annuum HOM05D006255 ORTHO05D008014 1.5e-34 150.6 188 65.4
GSVIVG01023898001 Vitis vinifera HOM05D006255 ORTHO05D008014 1.6e-28 130.6 66 90.9
Gohir.A03G206650 Gossypium hirsutum HOM05D006255 ORTHO05D008014 2.8e-25 119.8 231 39.4
C06p36040 Brassica napus HOM05D006255 ORTHO05D008014 3.6e-25 119.4 72 79.2
BolC6t38725H Brassica oleracea HOM05D006255 ORTHO05D008014 1.5e-23 114.0 68 79.4
Gorai.005G255900 Gossypium raimondii HOM05D006255 ORTHO05D008014 4.4e-23 112.5 231 38.1
AUR62012975 Chenopodium quinoa HOM05D006255 ORTHO05D008014 4.9e-22 109.0 226 43.4
Peaxi162Scf00875g00037 Petunia axillaris HOM05D006255 ORTHO05D008014 6.4e-22 108.6 91 59.3
Cre14.g629500 Chlamydomonas reinhardtii HOM05D006255 ORTHO05D008014 3.9e-19 99.4 93 51.6
PRCOL_00005063 Prasinoderma coloniale HOM05D006255 ORTHO05D008014 1.3e-17 94.4 229 32.3
Migut.H01073 Erythranthe guttata HOM05D006255 ORTHO05D008014 4.9e-14 82.4 220 37.7
MCO11G585 Micromonas commoda HOM05D006255 ORTHO05D008014 1.5e-10 70.9 93 45.2
BcaC08g45811 Brassica carinata HOM05D006255 ORTHO05D008014 5.6e-10 68.9 40 80.0
Cfa024524 Carpinus fangiana HOM05D006255 ORTHO05D008014 3.4e-07 59.7 78 42.3


User provided reference genes

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