Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G084800 Carya illinoinensis HOM05D000267 ORTHO05D009944 0.0e+00 1150.2 557 100.0
Cfa005283 Carpinus fangiana HOM05D000267 ORTHO05D002764 8.2e-257 890.2 558 79.6
QL11p051524 Quercus lobata HOM05D000267 ORTHO05D009944 2.5e-253 878.6 559 77.6
CSS0022193 Camellia sinensis var. sinensis HOM05D000267 ORTHO05D009944 4.9e-233 811.2 573 70.3
Prupe.8G168300 Prunus persica HOM05D000267 ORTHO05D009944 3.5e-231 805.1 562 71.4
Thecc.02G056000 Theobroma cacao HOM05D000267 ORTHO05D009944 5.0e-230 801.2 553 72.0
TAR628G1652 Trochodendron aralioides HOM05D000267 ORTHO05D009944 2.9e-225 785.4 569 68.4
GSVIVG01023990001 Vitis vinifera HOM05D000267 ORTHO05D009944 1.9e-224 782.7 567 69.1
Haze_02110 Corylus avellana HOM05D000267 ORTHO05D009944 1.5e-221 773.1 560 72.3
Actinidia18043 Actinidia chinensis HOM05D000267 ORTHO05D002764 1.2e-220 770.0 547 70.0
COL.COLO4_17372 Corchorus olitorius HOM05D000267 ORTHO05D009944 4.0e-219 765.0 553 70.2
Gorai.008G037400 Gossypium raimondii HOM05D000267 ORTHO05D009944 4.9e-217 758.1 570 67.0
MD05G1124600 Malus domestica HOM05D000267 ORTHO05D009944 6.4e-217 757.7 574 66.9
TWI79G0018 Tripterygium wilfordii HOM05D000267 ORTHO05D009944 1.4e-216 756.5 565 66.7
Manes.11G097600 Manihot esculenta HOM05D000267 ORTHO05D009944 4.1e-216 755.0 555 67.9
Duzib132G0985 Durio zibethinus HOM05D000267 ORTHO05D009944 1.6e-215 753.1 568 66.9
FvH4_2g15600 Fragaria vesca HOM05D000267 ORTHO05D009944 2.1e-215 752.7 523 71.3
Atru.chr5.3400 Acer truncatum HOM05D000267 ORTHO05D009944 1.7e-214 749.6 568 68.0
Gohir.D12G036200 Gossypium hirsutum HOM05D000267 ORTHO05D009944 1.7e-214 749.6 572 66.3
Rhsim11G0193400 Rhododendron simsii HOM05D000267 ORTHO05D009944 1.1e-213 746.9 619 63.3
FAN20G0365 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.5e-213 746.5 522 70.7
Potri.004G177400 Populus trichocarpa HOM05D000267 ORTHO05D009944 1.2e-210 736.9 545 66.6
CsaV3_2G016240 Cucumis sativus L. HOM05D000267 ORTHO05D009944 1.5e-210 736.5 555 65.6
ClCG02G012080 Citrullus lanatus HOM05D000267 ORTHO05D009944 3.7e-209 731.9 555 65.6
THA.LOC104807804 Tarenaya hassleriana HOM05D000267 ORTHO05D009944 3.7e-209 731.9 542 65.3
Dinv41920 Davidia involucrata HOM05D000267 ORTHO05D002764 2.1e-207 726.1 517 70.2
EL10Ac9g21344 Beta vulgaris HOM05D000267 ORTHO05D009944 2.7e-207 725.7 552 64.3
Migut.B00061 Erythranthe guttata HOM05D000267 ORTHO05D009944 8.6e-206 720.7 571 61.3
Sc14g0002320 Simmondsia chinensis HOM05D000267 ORTHO05D009944 1.1e-205 720.3 544 66.2
FAN24G1303 Fragaria x ananassa HOM05D000267 ORTHO05D009944 5.2e-203 711.4 657 58.6
AUR62013005 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.5e-202 709.9 574 62.0
Cpa.g.sc20.108 Carica papaya HOM05D000267 ORTHO05D009944 5.8e-202 708.0 569 63.1
AUR62010015 Chenopodium quinoa HOM05D000267 ORTHO05D009944 1.1e-200 703.7 523 65.8
Eucgr.I01454 Eucalyptus grandis HOM05D000267 ORTHO05D009944 5.4e-200 701.4 543 64.5
Cc09_g10270 Coffea canephora HOM05D000267 ORTHO05D009944 1.3e-196 690.3 586 61.9
MBI05_g00165_MAGBIO Magnolia biondii HOM05D000267 ORTHO05D009944 2.1e-196 689.5 561 62.0
vmacro02289 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 8.1e-196 687.6 492 68.7
FAN27G0796 Fragaria x ananassa HOM05D000267 ORTHO05D009944 1.7e-193 679.9 613 60.0
Nitab4.5_0000079g0250 Nicotiana tabacum HOM05D000267 ORTHO05D000298 1.9e-192 676.4 531 63.1
Hma1.2p1_0163F.1_g072670 Hydrangea macrophylla HOM05D000267 ORTHO05D009944 9.6e-189 664.1 463 70.6
AUR62015150 Chenopodium quinoa HOM05D000267 ORTHO05D009944 3.6e-188 662.1 523 63.3
ATR0661G537 Amborella trichopoda HOM05D000267 ORTHO05D009944 1.8e-187 659.8 539 60.7
FAN15G3022 Fragaria x ananassa HOM05D000267 ORTHO05D009944 6.9e-187 657.9 539 64.6
Sed0004064 Sechium edule HOM05D000267 ORTHO05D009944 6.9e-187 657.9 547 62.0
CANSAT25G1222 Cannabis sativa HOM05D000267 ORTHO05D009944 9.9e-186 654.1 510 64.3
AagrBONN_evm.TU.Sc2ySwM_344.2069 Anthoceros agrestis HOM05D000267 ORTHO05D009944 1.6e-183 646.7 542 57.0
MELO3C020832.2 Cucumis melo HOM05D000267 ORTHO05D009944 2.1e-183 646.4 561 59.4
Nitab4.5_0007484g0010 Nicotiana tabacum HOM05D000267 ORTHO05D009944 4.6e-183 645.2 566 58.3
Ciclev10028457m.g Citrus clementina HOM05D000267 ORTHO05D009944 1.5e-181 640.2 474 66.9
Pp3c3_37260 Physcomitrium patens HOM05D000267 ORTHO05D009944 1.5e-178 630.2 540 56.1
Gohir.A12G036400 Gossypium hirsutum HOM05D000267 ORTHO05D009944 8.4e-177 624.4 440 70.2
SMO367G0708 Selaginella moellendorffii HOM05D000267 ORTHO05D009944 5.5e-176 621.7 538 56.7
Mapoly0001s0154 Marchantia polymorpha HOM05D000267 ORTHO05D009944 3.0e-174 615.9 556 55.0
Os04g0560500 Oryza sativa ssp. japonica HOM05D000267 ORTHO05D009944 1.2e-162 577.4 560 50.5
Nn5g30837 Nelumbo nucifera HOM05D000267 ORTHO05D009944 1.3e-161 573.9 465 60.6
SalBow1G0833 Salvia bowleyana HOM05D000267 ORTHO05D009944 6.1e-159 565.1 578 51.2
Oeu015554.3 Olea europaea HOM05D000267 ORTHO05D002764 3.0e-158 562.8 560 53.2
Zm00001eb074100 Zea mays HOM05D000267 ORTHO05D009944 3.0e-150 536.2 545 49.7
Atru.chr5.3388 Acer truncatum HOM05D000267 ORTHO05D009944 1.3e-137 494.2 449 58.6
RcHm_v2.0_Chr6g0278781 Rosa chinensis HOM05D000267 ORTHO05D009944 2.9e-121 439.9 318 68.9
Ah.01g023200 Amaranthus hybridus HOM05D000267 ORTHO05D009944 3.6e-119 433.0 482 47.5
Pp3c21_13310 Physcomitrium patens HOM05D000267 ORTHO05D009944 6.4e-116 422.2 549 42.3
Cre13.g587500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 9.5e-104 381.7 574 38.9
HPP92_001748 Vanilla planifolia HOM05D000267 ORTHO05D009944 7.3e-96 355.5 301 56.1
Atru.chr5.3392 Acer truncatum HOM05D000267 ORTHO05D009944 1.6e-87 327.8 335 53.4
Actinidia20524 Actinidia chinensis HOM05D000267 ORTHO05D002764 6.2e-87 325.9 569 40.1
Cre17.g719500 Chlamydomonas reinhardtii HOM05D000267 ORTHO05D009944 3.1e-86 323.6 550 36.9
RcHm_v2.0_Chr6g0278801 Rosa chinensis HOM05D000267 ORTHO05D009944 8.4e-84 315.5 190 78.4
Peaxi162Scf00078g01332 Petunia axillaris HOM05D000267 ORTHO05D009944 3.9e-81 306.6 240 63.8
RcHm_v2.0_Chr6g0255801 Rosa chinensis HOM05D000267 ORTHO05D009944 7.3e-80 302.4 304 54.9
Hund06449 Selenicereus undatus HOM05D000267 ORTHO05D009944 7.3e-80 302.4 243 63.0
MCO05G576 Micromonas commoda HOM05D000267 ORTHO05D009944 4.6e-74 283.1 521 34.0
AagrBONN_evm.TU.Sc2ySwM_228.1198 Anthoceros agrestis HOM05D000267 ORTHO05D009944 3.3e-64 250.4 392 37.0
MCO05G735 Micromonas commoda HOM05D000267 ORTHO05D009944 6.9e-62 242.7 572 32.2
SEGI_17018 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.2e-50 205.3 202 49.5
Peaxi162Scf00078g01331 Petunia axillaris HOM05D000267 ORTHO05D009944 1.6e-50 204.9 127 77.2
PRCOL_00001600 Prasinoderma coloniale HOM05D000267 ORTHO05D009944 3.6e-50 203.8 559 29.2
Sabra04G0119300 Salix brachista HOM05D000267 ORTHO05D009944 5.5e-43 179.9 188 51.1
SEGI_10216 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 1.2e-37 162.2 276 32.6
RcHm_v2.0_Chr6g0255791 Rosa chinensis HOM05D000267 ORTHO05D009944 3.1e-30 137.5 85 75.3
HPP92_001749 Vanilla planifolia HOM05D000267 ORTHO05D009944 5.3e-30 136.7 85 72.9
Thecc.02G059600 Theobroma cacao HOM05D000267 ORTHO05D009944 1.6e-26 125.2 95 69.5
CARHR111810 Cardamine hirsuta HOM05D000267 ORTHO05D009944 5.7e-24 116.7 88 62.5
MCO15G399 Micromonas commoda HOM05D002360 ORTHO05D006971 2.7e-21 107.8 507 22.9
SEGI_00421 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 2.2e-20 104.8 179 33.0
Lj9A400T56 Lonicera japonica HOM05D000267 ORTHO05D009944 2.9e-20 104.4 105 56.2
Cre12.g509650 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006971 4.0e-17 94.0 502 22.7
SEGI_37732 Sequoiadendron giganteum HOM05D000267 ORTHO05D009944 4.4e-16 90.5 94 50.0
Lalb_Chr23g0278241 Lupinus albus HOM05D002360 ORTHO05D006971 5.7e-16 90.1 497 21.5
unitig_747.g21723 Utricularia gibba HOM05D002360 ORTHO05D006971 7.5e-16 89.7 474 21.9
RcHm_v2.0_Chr2g0123001 Rosa chinensis HOM05D000267 ORTHO05D009944 1.3e-15 89.0 70 62.9
arahy.Tifrunner.gnm1.ann1.M5MKEZ Arachis hypogaea HOM05D002360 ORTHO05D006971 8.3e-15 86.3 497 21.3
CANSAT78G1063 Cannabis sativa HOM05D002360 ORTHO05D006971 8.3e-15 86.3 500 21.2
MD04G1023800 Malus domestica HOM05D002360 ORTHO05D006971 8.3e-15 86.3 503 20.7
arahy.Tifrunner.gnm1.ann1.TUF7J0 Arachis hypogaea HOM05D002360 ORTHO05D006971 1.4e-14 85.5 497 21.1
THA.LOC104822231 Tarenaya hassleriana HOM05D002360 ORTHO05D006971 1.4e-14 85.5 504 21.0
ClCG07G015130 Citrullus lanatus HOM05D002360 ORTHO05D006971 1.2e-13 82.4 505 21.8
Prupe.1G174100 Prunus persica HOM05D002360 ORTHO05D006971 1.2e-13 82.4 500 20.8
Psat5g097840 Pisum sativum HOM05D002182 ORTHO05D008382 1.6e-13 82.0 497 20.3
vmacro02288 Vaccinium macrocarpon HOM05D000267 ORTHO05D009944 2.0e-13 81.6 97 51.5
Cre07.g314150 Chlamydomonas reinhardtii HOM05D002360 ORTHO05D006297 2.7e-13 81.3 502 20.5
Haze_11694 Corylus avellana HOM05D002360 ORTHO05D006971 2.7e-13 81.3 506 20.8
MCO04G494 Micromonas commoda HOM05D002360 ORTHO05D006971 2.7e-13 81.3 510 22.7
ECA232G4402 Erigeron canadensis HOM05D002360 ORTHO05D006971 7.7e-13 79.7 500 21.2
TPR.G18101 Trifolium pratense HOM05D002360 ORTHO05D006971 1.3e-12 79.0 497 20.3
Lj6g0010237 Lotus japonicus HOM05D002360 ORTHO05D006971 2.3e-12 78.2 494 20.2
Duzib151G1143 Durio zibethinus HOM05D002360 ORTHO05D006971 2.9e-12 77.8 502 20.3
Eucgr.H02625 Eucalyptus grandis HOM05D002360 ORTHO05D006971 2.9e-12 77.8 318 24.2
Ca_16437_v3 Cicer arietinum L. HOM05D002360 ORTHO05D006971 3.8e-12 77.4 497 20.1
Gohir.A10G132000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 5.0e-12 77.0 506 20.4
Gohir.D10G135000 Gossypium hirsutum HOM05D002360 ORTHO05D006971 6.5e-12 76.6 503 20.1
AT4G14210 Arabidopsis thaliana HOM05D002360 ORTHO05D006971 1.5e-11 75.5 318 23.6
PGR083G1913 Punica granatum HOM05D002360 ORTHO05D006971 1.9e-11 75.1 337 23.4
AL7G42150 Arabidopsis lyrata HOM05D002360 ORTHO05D006971 2.5e-11 74.7 318 23.6
CSS0024321 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.5e-11 74.7 321 22.7
CSS0045415 Camellia sinensis var. sinensis HOM05D002360 ORTHO05D006971 2.5e-11 74.7 321 22.7
Carub.0007s2818 Capsella rubella HOM05D002360 ORTHO05D006971 2.5e-11 74.7 318 23.6
CARHR220290 Cardamine hirsuta HOM05D002360 ORTHO05D006971 2.5e-11 74.7 328 23.8
Manes.05G193700 Manihot esculenta HOM05D002360 ORTHO05D006971 3.2e-11 74.3 318 23.0
Sabra02G0179300 Salix brachista HOM05D002360 ORTHO05D006971 3.2e-11 74.3 321 23.1
Rhsim12G0213700 Rhododendron simsii HOM05D002360 ORTHO05D006971 5.5e-11 73.6 321 22.7
CsaV3_4G002690 Cucumis sativus L. HOM05D002360 ORTHO05D006971 9.5e-11 72.8 324 22.8
Lsat_1_v5_gn_4_89381 Lactuca sativa HOM05D002360 ORTHO05D006971 9.5e-11 72.8 499 20.8
Sed0014208 Sechium edule HOM05D002360 ORTHO05D006971 9.5e-11 72.8 324 22.5
MELO3C017772.2 Cucumis melo HOM05D002360 ORTHO05D006971 1.2e-10 72.4 324 22.8
FAN12G1508 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.2e-10 72.4 322 23.9
FAN22G0477 Fragaria x ananassa HOM05D002360 ORTHO05D006971 1.6e-10 72.0 322 23.9
RcHm_v2.0_Chr4g0411571 Rosa chinensis HOM05D002360 ORTHO05D006971 1.6e-10 72.0 321 23.1
Thecc.04G190000 Theobroma cacao HOM05D002360 ORTHO05D006971 1.6e-10 72.0 333 22.8
CBR_g29276 Chara braunii HOM05D002360 ORTHO05D000002 2.8e-10 71.2 431 21.6
COL.COLO4_35973 Corchorus olitorius HOM05D002360 ORTHO05D006971 2.8e-10 71.2 323 22.9
BcaC02g09347 Brassica carinata HOM05D002360 ORTHO05D006971 3.6e-10 70.9 318 22.6
C04p41610 Brassica napus HOM05D002360 ORTHO05D006971 3.6e-10 70.9 318 22.6
BolC3t19948H Brassica oleracea HOM05D002360 ORTHO05D006971 3.6e-10 70.9 481 20.4
BolC4t25740H Brassica oleracea HOM05D002360 ORTHO05D006971 3.6e-10 70.9 318 22.6
Thhalv10024795m.g Eutrema salsugineum HOM05D002360 ORTHO05D006971 3.6e-10 70.9 318 23.0
FAN07G1347 Fragaria x ananassa HOM05D002360 ORTHO05D006971 3.6e-10 70.9 322 23.6
BcaC01g00209 Brassica carinata HOM05D002360 ORTHO05D006971 4.7e-10 70.5 321 22.4
Migut.O00487 Erythranthe guttata HOM05D002360 ORTHO05D006297 4.7e-10 70.5 478 20.5
Sp7g12070 Schrenkiella parvula HOM05D002360 ORTHO05D006971 8.0e-10 69.7 318 22.6
BcaNung05576 Brassica carinata HOM05D002360 ORTHO05D006971 1.0e-09 69.3 318 22.6
A04p07910 Brassica napus HOM05D002360 ORTHO05D006971 1.4e-09 68.9 318 22.6
Actinidia25995 Actinidia chinensis HOM05D002360 ORTHO05D006971 1.8e-09 68.6 321 21.8
BraA04t16480Z Brassica rapa HOM05D002360 ORTHO05D006971 1.8e-09 68.6 318 22.3
CDE07G0903 Ceratophyllum demersum HOM05D002360 ORTHO05D006971 1.8e-09 68.6 321 22.4
BcaB02g08628 Brassica carinata HOM05D002360 ORTHO05D006971 2.3e-09 68.2 318 22.3
Medtr3g084830 Medicago truncatula HOM05D002360 ORTHO05D006971 2.3e-09 68.2 316 21.8
A08p24280 Brassica napus HOM05D002360 ORTHO05D006971 4.0e-09 67.4 318 22.0
C03p76930 Brassica napus HOM05D002360 ORTHO05D006971 4.0e-09 67.4 318 22.0
BraA08t34383Z Brassica rapa HOM05D002360 ORTHO05D006971 7.5e-08 63.2 314 22.6
Cfa008674 Carpinus fangiana HOM05D002360 ORTHO05D006971 1.7e-07 62.0 280 22.1


User provided reference genes

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