Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G080400 Carya illinoinensis HOM05D005160 ORTHO05D006127 3.5e-300 1034.2 554 100.0
Haze_02160 Corylus avellana HOM05D005160 ORTHO05D006127 4.0e-235 818.1 548 78.8
Cfa005223 Carpinus fangiana HOM05D005160 ORTHO05D006127 8.8e-235 817.0 550 78.9
CiPaw.06G123200 Carya illinoinensis HOM05D005160 ORTHO05D006127 4.2e-229 798.1 526 83.5
QL11p049938 Quercus lobata HOM05D005160 ORTHO05D006127 1.9e-213 746.1 568 72.7
Potri.009G132900 Populus trichocarpa HOM05D005160 ORTHO05D006127 2.1e-212 742.7 552 73.0
MELO3C020808.2 Cucumis melo HOM05D005160 ORTHO05D006127 2.0e-210 736.1 555 71.0
Potri.004G173600 Populus trichocarpa HOM05D005160 ORTHO05D006127 5.8e-210 734.6 553 71.8
CsaV3_2G015970 Cucumis sativus L. HOM05D005160 ORTHO05D006127 8.3e-209 730.7 555 70.5
Thecc.02G062800 Theobroma cacao HOM05D005160 ORTHO05D006127 7.8e-207 724.2 552 70.8
Ciclev10028126m.g Citrus clementina HOM05D005160 ORTHO05D006127 1.7e-206 723.0 553 70.3
CSS0048155 Camellia sinensis var. sinensis HOM05D005160 ORTHO05D006127 1.5e-205 719.9 557 69.8
Thecc.02G062500 Theobroma cacao HOM05D005160 ORTHO05D006127 3.3e-205 718.8 552 70.7
TWI31G1222 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 2.1e-204 716.1 552 71.0
EL10Ac9g21400 Beta vulgaris HOM05D005160 ORTHO05D006127 1.4e-203 713.4 554 69.1
Hund06424 Selenicereus undatus HOM05D005160 ORTHO05D006127 1.4e-203 713.4 554 68.6
Gohir.D01G157700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 1.8e-203 713.0 553 70.0
THA.LOC104824770 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 3.1e-203 712.2 553 68.0
MD10G1123200 Malus domestica HOM05D005160 ORTHO05D006127 6.8e-203 711.1 547 71.5
TAR381G1224 Trochodendron aralioides HOM05D005160 ORTHO05D006127 6.8e-203 711.1 556 70.1
Manes.04G073300 Manihot esculenta HOM05D005160 ORTHO05D006127 8.9e-203 710.7 557 69.8
Gohir.A01G166700 Gossypium hirsutum HOM05D005160 ORTHO05D006127 5.8e-202 708.0 552 69.9
TWI75G0220 Tripterygium wilfordii HOM05D005160 ORTHO05D006127 9.8e-202 707.2 554 69.9
Hma1.2p1_0163F.1_g072320 Hydrangea macrophylla HOM05D005160 ORTHO05D006127 1.7e-201 706.4 548 70.8
RcHm_v2.0_Chr6g0244091 Rosa chinensis HOM05D005160 ORTHO05D006127 1.7e-201 706.4 547 72.6
Sed0006607 Sechium edule HOM05D005160 ORTHO05D006127 2.2e-201 706.1 550 70.2
THA.LOC104804092 Tarenaya hassleriana HOM05D005160 ORTHO05D006127 2.2e-201 706.1 547 69.3
ClCG02G011810 Citrullus lanatus HOM05D005160 ORTHO05D006127 3.7e-201 705.3 560 68.0
Gorai.002G195800 Gossypium raimondii HOM05D005160 ORTHO05D006127 1.1e-200 703.7 553 69.6
AUR62010059 Chenopodium quinoa HOM05D005160 ORTHO05D006127 1.4e-200 703.4 553 67.8
Dinv41951 Davidia involucrata HOM05D005160 ORTHO05D006127 1.4e-200 703.4 530 73.0
Lj3g0012456 Lotus japonicus HOM05D005160 ORTHO05D006127 3.2e-200 702.2 555 69.9
AUR62013051 Chenopodium quinoa HOM05D005160 ORTHO05D006127 4.1e-200 701.8 556 67.4
Sabra04G0115600 Salix brachista HOM05D005160 ORTHO05D006127 4.1e-200 701.8 535 71.2
Sabra09G0103200 Salix brachista HOM05D005160 ORTHO05D006127 4.1e-200 701.8 548 70.4
FvH4_2g01450 Fragaria vesca HOM05D005160 ORTHO05D006127 5.4e-200 701.4 550 72.0
FAN24G2272 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.4e-200 701.4 550 72.0
Thhalv10024826m.g Eutrema salsugineum HOM05D005160 ORTHO05D006127 6.0e-199 698.0 552 69.4
VMungo1127G1693 Vigna mungo HOM05D005160 ORTHO05D006127 6.0e-199 698.0 553 67.8
GSVIVG01024045001 Vitis vinifera HOM05D005160 ORTHO05D006127 1.0e-198 697.2 551 71.1
Duzib132G0556 Durio zibethinus HOM05D005160 ORTHO05D006127 3.0e-198 695.7 554 69.1
Lalb_Chr03g0025091 Lupinus albus HOM05D005160 ORTHO05D006127 3.0e-198 695.7 561 68.4
Cc02_g16320 Coffea canephora HOM05D005160 ORTHO05D006127 1.5e-197 693.3 554 66.1
FAN27G2227 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.5e-197 692.6 548 71.9
Carub.0007s0051 Capsella rubella HOM05D005160 ORTHO05D006127 3.3e-197 692.2 552 68.3
Prupe.8G163700 Prunus persica HOM05D005160 ORTHO05D006127 4.3e-197 691.8 551 70.2
FAN20G0465 Fragaria x ananassa HOM05D005160 ORTHO05D006127 5.6e-197 691.4 548 71.7
Ca_19053_v3 Cicer arietinum L. HOM05D005160 ORTHO05D006127 7.3e-197 691.0 542 69.6
Medtr4g073620 Medicago truncatula HOM05D005160 ORTHO05D006127 1.2e-196 690.3 535 69.5
Duzib052G1050 Durio zibethinus HOM05D005160 ORTHO05D006127 1.6e-196 689.9 552 68.8
FAN15G3563 Fragaria x ananassa HOM05D005160 ORTHO05D006127 2.8e-196 689.1 548 71.5
Sp7g37140 Schrenkiella parvula HOM05D005160 ORTHO05D006127 3.6e-196 688.7 555 68.8
AT4G38640 Arabidopsis thaliana HOM05D005160 ORTHO05D006127 1.8e-195 686.4 553 67.8
CARHR294360 Cardamine hirsuta HOM05D005160 ORTHO05D006127 5.2e-195 684.9 552 67.6
Phvul.011G034500 Phaseolus vulgaris HOM05D005160 ORTHO05D006127 5.2e-195 684.9 549 67.9
BcaB03g12216 Brassica carinata HOM05D005160 ORTHO05D006127 8.9e-195 684.1 545 68.8
Nn5g30735 Nelumbo nucifera HOM05D005160 ORTHO05D006127 1.2e-194 683.7 556 66.9
Psat7g175760 Pisum sativum HOM05D005160 ORTHO05D006127 3.4e-194 682.2 534 69.3
AL7G10530 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 7.5e-194 681.0 550 67.6
BcaC01g00246 Brassica carinata HOM05D005160 ORTHO05D006127 2.2e-193 679.5 534 69.1
C03p77200 Brassica napus HOM05D005160 ORTHO05D006127 2.2e-193 679.5 533 69.0
vmacro02269 Vaccinium macrocarpon HOM05D005160 ORTHO05D006127 2.9e-193 679.1 581 66.3
A08p24110 Brassica napus HOM05D005160 ORTHO05D006127 1.1e-192 677.2 534 69.1
Peaxi162Scf00362g00839 Petunia axillaris HOM05D005160 ORTHO05D006127 1.9e-192 676.4 542 68.1
BolC3t19975H Brassica oleracea HOM05D005160 ORTHO05D006127 2.4e-192 676.0 533 68.7
Glyma.12G031600 Glycine max HOM05D005160 ORTHO05D006127 2.4e-192 676.0 555 65.2
Nitab4.5_0001891g0030 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.2e-192 675.6 541 67.7
Aa31LG6G16530 Aethionema arabicum HOM05D005160 ORTHO05D006127 2.1e-191 672.9 544 66.7
Sc08g0003030 Simmondsia chinensis HOM05D005160 ORTHO05D006127 2.7e-191 672.5 568 66.0
Atru.chr5.3293 Acer truncatum HOM05D005160 ORTHO05D006127 3.5e-191 672.2 554 66.4
Nitab4.5_0005837g0020 Nicotiana tabacum HOM05D005160 ORTHO05D006127 3.5e-191 672.2 541 67.3
Rhsim11G0191300 Rhododendron simsii HOM05D005160 ORTHO05D006127 3.5e-191 672.2 555 67.9
SalBow1G7891 Salvia bowleyana HOM05D005160 ORTHO05D006127 4.6e-191 671.8 589 63.3
Glyma.11G106500 Glycine max HOM05D005160 ORTHO05D006127 1.7e-190 669.8 555 67.2
MSTRG.16896 Avicennia marina HOM05D005160 ORTHO05D006127 3.0e-190 669.1 592 63.7
PGSC0003DMG402006199 Solanum tuberosum HOM05D005160 ORTHO05D006127 5.6e-189 664.8 543 66.3
Solyc01g111370.3 Solanum lycopersicum HOM05D005160 ORTHO05D006127 6.2e-188 661.4 543 66.3
Sopen01g053440 Solanum pennellii HOM05D005160 ORTHO05D006127 4.0e-187 658.7 543 66.1
Aqoxy5G01804 Aquilegia oxysepala HOM05D005160 ORTHO05D006127 1.2e-186 657.1 544 68.4
CAN.G588.54 Capsicum annuum HOM05D005160 ORTHO05D006127 1.5e-186 656.8 525 67.0
Ah.01g022840 Amaranthus hybridus HOM05D005160 ORTHO05D006127 4.9e-185 651.7 552 64.3
Oeu014453.1 Olea europaea HOM05D005160 ORTHO05D006127 8.4e-185 651.0 617 60.9
Migut.B00095 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.1e-184 650.6 539 65.5
MD05G1119500 Malus domestica HOM05D005160 ORTHO05D006127 1.6e-183 646.7 549 67.9
PSO170G2472 Papaver somniferum HOM05D005160 ORTHO05D006127 2.1e-183 646.4 560 63.6
PSO700G0063 Papaver somniferum HOM05D005160 ORTHO05D006127 6.6e-182 641.3 562 63.2
MBI09_g14140_MAGBIO Magnolia biondii HOM05D005160 ORTHO05D006127 3.3e-181 639.0 552 65.8
Eucgr.I01400 Eucalyptus grandis HOM05D005160 ORTHO05D006127 7.3e-181 637.9 460 73.7
SGA_v2.0_scaffold32G13272 Striga asiatica HOM05D005160 ORTHO05D006127 6.2e-180 634.8 565 62.1
SGA_v2.0_scaffold58G20392 Striga asiatica HOM05D005160 ORTHO05D006127 3.8e-177 625.5 576 62.5
Lsat_1_v5_gn_3_46280 Lactuca sativa HOM05D005160 ORTHO05D006127 1.0e-174 617.5 532 63.7
DCAR_003159 Daucus carota HOM05D005160 ORTHO05D006127 1.7e-174 616.7 553 61.7
HanXRQChr17g0543921 Helianthus annuus HOM05D005160 ORTHO05D006127 1.3e-169 600.5 487 65.5
TPR.G39261 Trifolium pratense HOM05D005160 ORTHO05D006127 7.1e-168 594.7 450 70.9
ATR0579G151 Amborella trichopoda HOM05D005160 ORTHO05D006127 3.5e-167 592.4 601 58.4
Actinidia20505 Actinidia chinensis HOM05D005160 ORTHO05D006127 1.0e-150 537.7 508 61.4
Manes.11G095300 Manihot esculenta HOM05D005160 ORTHO05D006127 6.7e-142 508.4 396 70.7
SEGI_02117 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.7e-140 503.8 577 51.1
Actinidia00615 Actinidia chinensis HOM05D005160 ORTHO05D006127 5.3e-139 498.8 494 59.7
COL.COLO4_17310 Corchorus olitorius HOM05D005160 ORTHO05D006127 8.8e-134 481.5 539 54.2
unitig_0.g42 Utricularia gibba HOM05D005160 ORTHO05D000138 4.2e-128 462.6 448 55.8
CANSAT54G2532 Cannabis sativa HOM05D005160 ORTHO05D006127 3.0e-126 456.4 353 69.7
Oeu006646.1 Olea europaea HOM05D005160 ORTHO05D006127 3.7e-124 449.5 478 55.0
Cpa.g.sc37.161 Carica papaya HOM05D005160 ORTHO05D006127 7.5e-117 425.2 360 65.8
Manes.05G150701 Manihot esculenta HOM05D005160 ORTHO05D006127 8.5e-113 411.8 305 73.1
Manes.07G080900 Manihot esculenta HOM05D005160 ORTHO05D006127 1.0e-110 404.8 305 72.5
CDE02G2386 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.8e-110 404.1 299 70.9
CDE04G1868 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 6.8e-110 402.1 308 71.8
SMO012G0038 Selaginella moellendorffii HOM05D005160 ORTHO05D006127 1.2e-109 401.4 521 45.9
BraA08t34366Z Brassica rapa HOM05D005160 ORTHO05D006127 2.6e-109 400.2 338 65.7
ECA246G0167 Erigeron canadensis HOM05D005160 ORTHO05D006127 1.9e-104 384.0 274 71.9
arahy.Tifrunner.gnm1.ann1.JXV2U6 Arachis hypogaea HOM05D005160 ORTHO05D006127 1.6e-103 380.9 343 62.7
arahy.Tifrunner.gnm1.ann1.IE9R9X Arachis hypogaea HOM05D005160 ORTHO05D006127 4.7e-103 379.4 343 62.4
Lj5A181T55 Lonicera japonica HOM05D005160 ORTHO05D006127 1.4e-102 377.9 379 55.9
AL7G44960 Arabidopsis lyrata HOM05D005160 ORTHO05D006127 4.1e-99 366.3 395 55.2
Pp3c15_6240 Physcomitrium patens HOM05D005160 ORTHO05D006127 5.2e-94 349.4 520 40.8
AagrBONN_evm.TU.Sc2ySwM_344.1211 Anthoceros agrestis HOM05D005160 ORTHO05D006127 6.8e-94 349.0 547 40.2
Lalb_Chr01g0001791 Lupinus albus HOM05D005160 ORTHO05D006127 1.1e-83 315.1 261 65.1
Mapoly0029s0105 Marchantia polymorpha HOM05D005160 ORTHO05D006127 1.1e-80 305.1 508 38.0
Lj9A392T36 Lonicera japonica HOM05D005160 ORTHO05D006127 4.9e-76 289.7 312 55.8
Lj9A392T37 Lonicera japonica HOM05D005160 ORTHO05D006127 1.9e-64 251.1 167 75.4
Lalb_Chr01g0001781 Lupinus albus HOM05D005160 ORTHO05D006127 1.5e-56 224.9 268 52.2
Pp3c24_1990 Physcomitrium patens HOM05D005160 ORTHO05D006127 2.7e-50 204.1 523 31.4
Cpa.g.sc37.160 Carica papaya HOM05D005160 ORTHO05D006127 2.1e-47 194.5 178 60.1
SEGI_18476 Sequoiadendron giganteum HOM05D005160 ORTHO05D006127 1.8e-46 191.4 187 55.6
HPP92_025488 Vanilla planifolia HOM05D005160 ORTHO05D006127 8.4e-36 156.0 125 68.8
CBR_g32587 Chara braunii HOM05D005160 ORTHO05D006127 3.5e-34 150.6 423 27.0
MCO01G409 Micromonas commoda HOM05D005160 ORTHO05D006127 6.3e-31 139.8 358 28.5
Cre09.g390467 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.2e-26 125.6 375 28.5
AagrBONN_evm.TU.Sc2ySwM_228.1713 Anthoceros agrestis HOM05D022446 ORTHO05D006127 7.9e-26 122.9 440 27.7
Migut.N03290 Erythranthe guttata HOM05D005160 ORTHO05D006127 5.1e-25 120.2 92 66.3
TPR.G40783 Trifolium pratense HOM05D005160 ORTHO05D006127 6.3e-23 113.2 77 68.8
MCO08G169 Micromonas commoda HOM05D005160 ORTHO05D006127 1.4e-22 112.1 351 28.5
VMungo1080G0079 Vigna mungo HOM05D005160 ORTHO05D006127 2.6e-21 107.8 156 46.2
Migut.B00916 Erythranthe guttata HOM05D005160 ORTHO05D006127 1.7e-20 105.1 76 67.1
CDE02G2974 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.2e-18 99.0 156 43.6
CDE04G1166 Ceratophyllum demersum HOM05D005160 ORTHO05D006127 1.1e-14 85.9 129 41.1
Cre14.g617800 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 1.8e-14 85.1 439 24.6
PRCOL_00003313 Prasinoderma coloniale HOM05D005160 ORTHO05D006127 1.8e-14 85.1 509 23.6
Cre06.g278550 Chlamydomonas reinhardtii HOM05D005160 ORTHO05D006127 6.1e-10 70.1 395 23.5
AagrBONN_evm.TU.Sc2ySwM_228.1711 Anthoceros agrestis HOM05D000883 ORTHO05D002942 8.0e-10 69.7 231 30.3
MD08G1139200 Malus domestica HOM05D005160 ORTHO05D006127 7.5e-08 63.2 81 49.4
Glyma.08G315000 Glycine max HOM05D005160 ORTHO05D006127 1.7e-07 62.0 50 60.0
CBR_g30194 Chara braunii HOM05D005032 ORTHO05D006268 3.7e-07 60.8 250 25.2
RcHm_v2.0_Chr7g0187121 Rosa chinensis HOM05D005160 ORTHO05D006127 4.8e-07 60.5 44 65.9
arahy.Tifrunner.gnm1.ann1.HVU79Z Arachis hypogaea HOM05D005032 ORTHO05D006268 8.2e-07 59.7 219 25.1


User provided reference genes

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