Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G073300 Carya illinoinensis HOM05D005368 ORTHO05D006417 2.9e-63 245.0 118 100.0
CiPaw.06G128000 Carya illinoinensis HOM05D005368 ORTHO05D006417 4.0e-60 234.6 118 94.1
Cfa005111 Carpinus fangiana HOM05D005368 ORTHO05D006417 1.2e-56 223.0 118 89.0
Haze_02245 Corylus avellana HOM05D005368 ORTHO05D006417 1.2e-56 223.0 118 89.8
Glyma.04G008100 Glycine max HOM05D005368 ORTHO05D006417 2.0e-56 222.2 116 90.5
Thecc.02G075100 Theobroma cacao HOM05D005368 ORTHO05D006417 2.0e-56 222.2 118 89.0
Haze_02248 Corylus avellana HOM05D005368 ORTHO05D006417 4.6e-56 221.1 117 89.7
Glyma.06G007900 Glycine max HOM05D005368 ORTHO05D006417 5.9e-56 220.7 116 89.7
Duzib052G0771 Durio zibethinus HOM05D005368 ORTHO05D006417 1.7e-55 219.2 118 87.3
Manes.04G083400 Manihot esculenta HOM05D005368 ORTHO05D006417 2.3e-55 218.8 118 88.1
GSVIVG01024171001 Vitis vinifera HOM05D005368 ORTHO05D006417 3.9e-55 218.0 116 86.2
Gohir.D02G220600 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.0e-55 217.6 118 87.3
CANSAT11G1177 Cannabis sativa HOM05D005368 ORTHO05D006417 6.6e-55 217.2 114 89.5
Medtr3g117550 Medicago truncatula HOM05D005368 ORTHO05D006417 6.6e-55 217.2 118 84.7
Sed0023703 Sechium edule HOM05D005368 ORTHO05D006417 6.6e-55 217.2 116 87.1
Gohir.A12G041100 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.1e-54 216.5 118 85.6
Gorai.005G248500 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.1e-54 216.5 118 86.4
Lalb_Chr11g0061301 Lupinus albus HOM05D005368 ORTHO05D006417 1.1e-54 216.5 118 85.6
Gohir.D12G031300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 1.5e-54 216.1 118 85.6
Gorai.008G032000 Gossypium raimondii HOM05D005368 ORTHO05D006417 1.5e-54 216.1 118 85.6
Duzib132G1204 Durio zibethinus HOM05D005368 ORTHO05D006417 1.9e-54 215.7 118 85.6
Sed0006755 Sechium edule HOM05D005368 ORTHO05D006417 2.5e-54 215.3 114 87.7
FAN20G0372 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.3e-54 214.9 118 86.4
Gohir.A03G199300 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.3e-54 214.9 118 85.6
VMungo1309G2922 Vigna mungo HOM05D005368 ORTHO05D006417 5.6e-54 214.2 116 87.1
Ca_15334_v3 Cicer arietinum L. HOM05D005368 ORTHO05D006417 9.5e-54 213.4 114 86.0
MBI18_g13600_MAGBIO Magnolia biondii HOM05D005368 ORTHO05D006417 9.5e-54 213.4 114 88.6
Manes.11G081900 Manihot esculenta HOM05D005368 ORTHO05D006417 1.2e-53 213.0 118 86.4
Psat5g003920 Pisum sativum HOM05D005368 ORTHO05D006417 2.8e-53 211.8 118 84.7
Potri.004G163000 Populus trichocarpa HOM05D005368 ORTHO05D006417 2.8e-53 211.8 120 85.8
Aqoxy5G01478 Aquilegia oxysepala HOM05D005368 ORTHO05D006417 3.6e-53 211.5 113 87.6
ECA246G1492 Erigeron canadensis HOM05D005368 ORTHO05D006417 3.6e-53 211.5 115 85.2
FvH4_2g10430 Fragaria vesca HOM05D005368 ORTHO05D006417 3.6e-53 211.5 116 86.2
FAN24G2358 Fragaria x ananassa HOM05D005368 ORTHO05D006417 3.6e-53 211.5 116 86.2
Nn5g29240 Nelumbo nucifera HOM05D005368 ORTHO05D006417 3.6e-53 211.5 113 85.0
FAN27G2088 Fragaria x ananassa HOM05D005368 ORTHO05D006417 4.7e-53 211.1 116 85.3
PGR042G2956 Punica granatum HOM05D005368 ORTHO05D006417 4.7e-53 211.1 117 82.9
TWI31G1415 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 4.7e-53 211.1 115 87.0
Lalb_Chr08g0246711 Lupinus albus HOM05D005368 ORTHO05D006417 6.2e-53 210.7 116 83.6
Potri.009G124600 Populus trichocarpa HOM05D005368 ORTHO05D006417 6.2e-53 210.7 118 86.4
TWI79G1074 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.0e-52 209.9 115 84.3
CsaV3_2G015290 Cucumis sativus L. HOM05D005368 ORTHO05D006417 1.4e-52 209.5 116 83.6
FAN15G3179 Fragaria x ananassa HOM05D005368 ORTHO05D006417 1.8e-52 209.1 116 85.3
Prupe.8G083900 Prunus persica HOM05D005368 ORTHO05D006417 1.8e-52 209.1 118 83.1
TAR376G0297 Trochodendron aralioides HOM05D005368 ORTHO05D006417 1.8e-52 209.1 113 86.7
ClCG11G003860 Citrullus lanatus HOM05D005368 ORTHO05D006417 2.3e-52 208.8 117 83.8
MD00G1086200 Malus domestica HOM05D005368 ORTHO05D006417 3.1e-52 208.4 118 83.1
RcHm_v2.0_Chr6g0267931 Rosa chinensis HOM05D005368 ORTHO05D006417 3.1e-52 208.4 116 83.6
COL.COLO4_26045 Corchorus olitorius HOM05D005368 ORTHO05D006417 4.0e-52 208.0 114 84.2
HanXRQChr15g0478311 Helianthus annuus HOM05D005368 ORTHO05D006417 5.2e-52 207.6 114 84.2
Lj3g0011506 Lotus japonicus HOM05D005368 ORTHO05D006417 5.2e-52 207.6 114 86.0
BcaNung07080 Brassica carinata HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 83.6
A03p63090 Brassica napus HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 83.6
BolC7t46501H Brassica oleracea HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 83.6
BraA03t15384Z Brassica rapa HOM05D005368 ORTHO05D006417 1.2e-51 206.5 116 83.6
TWI75G0748 Tripterygium wilfordii HOM05D005368 ORTHO05D006417 1.5e-51 206.1 115 85.2
AL7G16500 Arabidopsis lyrata HOM05D005368 ORTHO05D006417 2.6e-51 205.3 116 83.6
CSS0039837 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 2.6e-51 205.3 112 84.8
Atru.chr5.3143 Acer truncatum HOM05D005368 ORTHO05D006417 3.4e-51 204.9 117 82.1
C07p60710 Brassica napus HOM05D005368 ORTHO05D006417 3.4e-51 204.9 116 82.8
BcaB03g11818 Brassica carinata HOM05D005368 ORTHO05D006417 4.4e-51 204.5 116 82.8
A08p16660 Brassica napus HOM05D005368 ORTHO05D006417 4.4e-51 204.5 116 82.8
Carub.0007s0559 Capsella rubella HOM05D005368 ORTHO05D006417 4.4e-51 204.5 116 82.8
QL11p046417 Quercus lobata HOM05D005368 ORTHO05D006417 4.4e-51 204.5 137 73.7
Hma1.2p1_0032F.1_g020120 Hydrangea macrophylla HOM05D005368 ORTHO05D006417 5.8e-51 204.1 116 81.9
AT4G34700 Arabidopsis thaliana HOM05D005368 ORTHO05D006417 7.5e-51 203.8 116 82.8
CSS0032904 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 7.5e-51 203.8 112 83.9
CARHR243000 Cardamine hirsuta HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 82.8
PSO210G0115 Papaver somniferum HOM05D005368 ORTHO05D006417 9.8e-51 203.4 110 86.4
Sp7g32480 Schrenkiella parvula HOM05D005368 ORTHO05D006417 9.8e-51 203.4 116 81.9
Nitab4.5_0001317g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 115 81.7
PSO170G4570 Papaver somniferum HOM05D005368 ORTHO05D006417 1.3e-50 203.0 110 85.5
Cc02_g16910 Coffea canephora HOM05D005368 ORTHO05D006417 2.2e-50 202.2 118 82.2
Phvul.009G002900 Phaseolus vulgaris HOM05D005368 ORTHO05D006417 2.2e-50 202.2 116 83.6
BcaNung00672 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 81.0
BcaNung00675 Brassica carinata HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 81.0
A01p03810 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 81.0
C01p04120 Brassica napus HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 81.0
BraA01t00366Z Brassica rapa HOM05D005368 ORTHO05D006417 2.9e-50 201.8 116 81.0
Ciclev10029601m.g Citrus clementina HOM05D005368 ORTHO05D006417 6.4e-50 200.7 114 81.6
Gorai.002G149100 Gossypium raimondii HOM05D005368 ORTHO05D006417 6.4e-50 200.7 120 80.8
THA.LOC104819629 Tarenaya hassleriana HOM05D005368 ORTHO05D006417 8.3e-50 200.3 116 81.9
CDE02G1335 Ceratophyllum demersum HOM05D000240 ORTHO05D001140 1.4e-49 199.5 117 80.3
MSTRG.27675 Avicennia marina HOM05D005368 ORTHO05D006417 1.9e-49 199.1 118 80.5
BcaC01g00883 Brassica carinata HOM05D005368 ORTHO05D006417 1.9e-49 199.1 115 81.7
Nitab4.5_0005266g0100 Nicotiana tabacum HOM05D005368 ORTHO05D006417 2.4e-49 198.7 115 80.0
Aa31LG2G15810 Aethionema arabicum HOM05D005368 ORTHO05D006417 4.1e-49 198.0 116 78.4
C03p85580 Brassica napus HOM05D005368 ORTHO05D006417 4.1e-49 198.0 116 80.2
CAN.G170.100 Capsicum annuum HOM05D005368 ORTHO05D006417 4.1e-49 198.0 115 79.1
Migut.N01277 Erythranthe guttata HOM05D005368 ORTHO05D006417 5.4e-49 197.6 118 79.7
MELO3C023357.2 Cucumis melo HOM05D005368 ORTHO05D006417 7.0e-49 197.2 117 79.5
HPP92_012929 Vanilla planifolia HOM05D005368 ORTHO05D006417 2.0e-48 195.7 115 80.0
Hund00179 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.5e-48 194.9 111 79.3
Hund00187 Selenicereus undatus HOM05D005368 ORTHO05D006417 3.5e-48 194.9 111 79.3
MD10G1063100 Malus domestica HOM05D005368 ORTHO05D006417 7.8e-48 193.7 117 78.6
Solyc01g110390.2 Solanum lycopersicum HOM05D005368 ORTHO05D006417 1.0e-47 193.4 115 76.5
MSTRG.20040 Avicennia marina HOM05D005368 ORTHO05D006417 1.3e-47 193.0 115 78.3
Peaxi162Scf00016g00038 Petunia axillaris HOM05D005368 ORTHO05D006417 1.7e-47 192.6 115 76.5
Hund06283 Selenicereus undatus HOM05D005368 ORTHO05D006417 2.5e-46 188.7 111 73.9
SGA_v2.0_scaffold207G41877 Striga asiatica HOM05D005368 ORTHO05D006417 2.5e-46 188.7 115 76.5
TPR.G32174 Trifolium pratense HOM05D005368 ORTHO05D006417 5.6e-46 187.6 182 55.5
BraA08t33631Z Brassica rapa HOM05D005368 ORTHO05D006417 9.5e-46 186.8 151 63.6
Lsat_1_v5_gn_3_44180 Lactuca sativa HOM05D005368 ORTHO05D006417 2.1e-45 185.7 102 84.3
Os06g0714100 Oryza sativa ssp. japonica HOM05D005368 ORTHO05D006417 2.8e-45 185.3 113 74.3
MD00G1117500 Malus domestica HOM05D005368 ORTHO05D006417 3.6e-45 184.9 118 76.3
Nitab4.5_0010630g0030 Nicotiana tabacum HOM05D005368 ORTHO05D006417 3.6e-45 184.9 104 83.7
BolC1t00400H Brassica oleracea HOM05D005368 ORTHO05D006417 6.8e-44 180.6 110 76.4
ATR0149G005 Amborella trichopoda HOM05D005368 ORTHO05D006417 8.9e-44 180.3 109 75.2
Sc08g0000900 Simmondsia chinensis HOM05D005368 ORTHO05D006417 8.9e-44 180.3 106 77.4
Gohir.D13G096825 Gossypium hirsutum HOM05D005368 ORTHO05D006417 3.4e-43 178.3 105 79.0
Ah.01g006460 Amaranthus hybridus HOM05D005368 ORTHO05D006417 7.5e-43 177.2 113 69.0
AUR62010388 Chenopodium quinoa HOM05D005368 ORTHO05D006417 9.8e-43 176.8 113 72.6
Dinv23453 Davidia involucrata HOM05D005368 ORTHO05D006417 1.7e-42 176.0 97 85.6
Ah.01g018810 Amaranthus hybridus HOM05D005368 ORTHO05D006417 2.2e-42 175.6 102 78.4
AUR62016830 Chenopodium quinoa HOM05D005368 ORTHO05D006417 2.2e-42 175.6 113 71.7
Zm00001eb227940 Zea mays HOM05D005368 ORTHO05D006417 3.2e-41 171.8 103 74.8
EL10Ac9g21636 Beta vulgaris HOM05D005368 ORTHO05D006417 2.1e-40 169.1 100 76.0
SalBow3G2013 Salvia bowleyana HOM05D005368 ORTHO05D006417 2.7e-40 168.7 105 76.2
Oeu046129.2 Olea europaea HOM05D005368 ORTHO05D006417 1.1e-38 163.3 124 66.9
CDE04G1205 Ceratophyllum demersum HOM05D005368 ORTHO05D006417 1.2e-35 153.3 91 80.2
Nitab4.5_0005932g0060 Nicotiana tabacum HOM05D005368 ORTHO05D006417 1.2e-35 153.3 115 67.0
Pp3c6_19130 Physcomitrium patens HOM05D005368 ORTHO05D006417 6.4e-34 147.5 112 58.9
SEGI_21378 Sequoiadendron giganteum HOM05D005368 ORTHO05D006417 1.1e-33 146.7 106 62.3
Actinidia02246 Actinidia chinensis HOM05D005368 ORTHO05D006417 2.4e-33 145.6 119 63.0
Mapoly0002s0197 Marchantia polymorpha HOM05D005368 ORTHO05D006417 4.1e-33 144.8 111 59.5
Thhalv10026594m.g Eutrema salsugineum HOM05D005368 ORTHO05D006417 2.1e-32 142.5 116 62.9
PGSC0003DMG400005571 Solanum tuberosum HOM05D005368 ORTHO05D006417 1.5e-30 136.3 85 75.3
Eucgr.G01730 Eucalyptus grandis HOM05D005368 ORTHO05D006417 8.9e-28 127.1 60 91.7
AagrBONN_evm.TU.Sc2ySwM_368.1500 Anthoceros agrestis HOM05D005368 ORTHO05D006417 1.2e-27 126.7 109 51.4
CBR_g22898 Chara braunii HOM05D000019 ORTHO05D000048 4.2e-25 118.2 114 49.1
Sopen01g052540 Solanum pennellii HOM05D005368 ORTHO05D006417 2.7e-24 115.5 57 84.2
HanXRQChr10g0292781 Helianthus annuus HOM05D005368 ORTHO05D006417 4.6e-24 114.8 58 82.8
SMO159G0001 Selaginella moellendorffii HOM05D005368 ORTHO05D006417 1.3e-23 113.2 103 52.4
SMO223G0026 Selaginella moellendorffii HOM05D000032 ORTHO05D004142 1.3e-23 113.2 105 51.4
Gohir.A13G090800 Gossypium hirsutum HOM05D005368 ORTHO05D006417 5.1e-23 111.3 85 67.1
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 6.6e-23 110.9 60 80.0
CSS0005721 Camellia sinensis var. sinensis HOM05D005368 ORTHO05D006417 1.9e-22 109.4 60 81.7
unitig_60.g25866 Utricularia gibba HOM05D005368 ORTHO05D006417 2.0e-19 99.4 113 47.8
BolC3t20846H Brassica oleracea HOM05D005368 ORTHO05D006417 1.3e-18 96.7 83 62.7
MCO15G169 Micromonas commoda HOM05D005368 ORTHO05D006417 6.4e-18 94.4 96 46.9
Oeu020711.1 Olea europaea HOM05D005368 ORTHO05D006417 1.1e-17 93.6 83 54.2
Migut.B00174 Erythranthe guttata HOM05D005368 ORTHO05D006417 2.4e-17 92.4 58 84.5
HanXRQChr17g0544121 Helianthus annuus HOM05D005368 ORTHO05D006417 1.6e-16 89.7 56 80.4
BcaNung04613 Brassica carinata HOM05D005368 ORTHO05D006417 8.7e-15 84.0 55 69.1
MD05G1026100 Malus domestica HOM05D005333 ORTHO05D005776 8.1e-13 77.4 79 54.4
BcaNung02377 Brassica carinata HOM05D005368 ORTHO05D006417 1.4e-12 76.6 46 71.7
Cre11.g467668 Chlamydomonas reinhardtii HOM05D005368 ORTHO05D006417 5.5e-09 64.7 99 34.3
VMungo0540G1094 Vigna mungo HOM05D003030 ORTHO05D006417 3.5e-08 62.0 84 48.8


User provided reference genes

Program Settings