Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G072000 Carya illinoinensis HOM05D007030 ORTHO05D009159 1.7e-290 1001.9 492 100.0
Haze_02305 Corylus avellana HOM05D007030 ORTHO05D009159 7.3e-241 837.0 514 80.5
QL11p045675 Quercus lobata HOM05D007030 ORTHO05D009159 3.6e-224 781.6 464 81.5
Manes.04G085100 Manihot esculenta HOM05D007030 ORTHO05D009159 6.4e-221 770.8 487 77.4
Prupe.8G087700 Prunus persica HOM05D007030 ORTHO05D009159 1.9e-217 759.2 494 76.7
Dinv23472 Davidia involucrata HOM05D007030 ORTHO05D009159 6.2e-216 754.2 485 76.5
GSVIVG01024202001 Vitis vinifera HOM05D007030 ORTHO05D009159 7.6e-214 747.3 488 76.0
Potri.009G122300 Populus trichocarpa HOM05D007030 ORTHO05D009159 6.4e-213 744.2 487 74.7
RcHm_v2.0_Chr6g0267041 Rosa chinensis HOM05D007030 ORTHO05D009159 6.4e-213 744.2 493 75.9
MD10G1065800 Malus domestica HOM05D007030 ORTHO05D009159 9.3e-212 740.3 503 74.0
Ciclev10028302m.g Citrus clementina HOM05D007030 ORTHO05D009159 1.8e-210 736.1 477 75.5
FAN15G3154 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.9e-209 732.6 493 74.2
FAN20G0390 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.9e-209 732.6 493 74.2
FAN24G1057 Fragaria x ananassa HOM05D007030 ORTHO05D009159 1.1e-207 726.9 493 73.6
Nn6g32211 Nelumbo nucifera HOM05D007030 ORTHO05D009159 1.1e-207 726.9 486 74.1
Gohir.D13G029100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 1.2e-206 723.4 487 73.3
Lj5A191G48 Lonicera japonica HOM05D007030 ORTHO05D009159 5.8e-206 721.1 465 75.5
Rhsim11G0182100 Rhododendron simsii HOM05D007030 ORTHO05D009159 3.8e-205 718.4 511 70.8
PGR142G2744 Punica granatum HOM05D007030 ORTHO05D009159 5.5e-204 714.5 487 73.5
vmacro02066 Vaccinium macrocarpon HOM05D007030 ORTHO05D009159 2.7e-203 712.2 438 78.3
Eucgr.I01312 Eucalyptus grandis HOM05D007030 ORTHO05D009159 3.5e-203 711.8 472 75.4
Glyma.11G112600 Glycine max HOM05D007030 ORTHO05D009159 4.6e-203 711.4 485 73.0
TAR381G1513 Trochodendron aralioides HOM05D007030 ORTHO05D009159 1.3e-202 709.9 432 79.9
Phvul.011G040600 Phaseolus vulgaris HOM05D007030 ORTHO05D009159 3.9e-202 708.4 484 74.0
TWI31G0693 Tripterygium wilfordii HOM05D007030 ORTHO05D009159 5.1e-202 708.0 486 73.7
Gorai.013G033100 Gossypium raimondii HOM05D007030 ORTHO05D009159 1.5e-201 706.4 529 67.7
Lj3g0022597 Lotus japonicus HOM05D007030 ORTHO05D009159 5.7e-201 704.5 451 76.5
CANSAT11G0427 Cannabis sativa HOM05D007030 ORTHO05D009159 7.4e-201 704.1 462 74.9
CsaV3_2G015180 Cucumis sativus L. HOM05D007030 ORTHO05D009159 6.3e-200 701.0 443 76.7
Gohir.A13G031100 Gossypium hirsutum HOM05D007030 ORTHO05D009159 3.1e-199 698.7 487 72.3
Oeu008578.1 Olea europaea HOM05D007030 ORTHO05D009159 5.3e-199 698.0 433 76.9
CSS0044633 Camellia sinensis var. sinensis HOM05D007030 ORTHO05D009159 1.2e-198 696.8 442 76.2
Lalb_Chr01g0002251 Lupinus albus HOM05D007030 ORTHO05D009159 4.5e-198 694.9 454 75.1
Nitab4.5_0003006g0030 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.0e-197 693.7 439 75.9
Sopen11g019320 Solanum pennellii HOM05D007030 ORTHO05D009159 3.8e-197 691.8 460 73.0
PGSC0003DMG400009584 Solanum tuberosum HOM05D007030 ORTHO05D009159 6.5e-197 691.0 460 72.4
Aqoxy5G01506 Aquilegia oxysepala HOM05D007030 ORTHO05D009159 1.9e-196 689.5 478 72.4
Medtr4g071230 Medicago truncatula HOM05D007030 ORTHO05D009159 9.4e-196 687.2 451 74.7
Nitab4.5_0001413g0070 Nicotiana tabacum HOM05D007030 ORTHO05D009159 1.2e-195 686.8 439 75.6
MBI05_g05431_MAGBIO Magnolia biondii HOM05D007030 ORTHO05D009159 2.1e-195 686.0 481 70.3
Cpa.g.sc150.40 Carica papaya HOM05D007030 ORTHO05D009159 3.6e-195 685.3 496 69.0
arahy.Tifrunner.gnm1.ann1.X71KKA Arachis hypogaea HOM05D007030 ORTHO05D009159 4.6e-195 684.9 425 77.9
ECA246G1002 Erigeron canadensis HOM05D007030 ORTHO05D009159 1.4e-194 683.3 425 76.0
THA.LOC104824797 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 1.8e-194 682.9 477 69.6
BcaNung06994 Brassica carinata HOM05D007030 ORTHO05D009159 5.7e-193 677.9 465 69.7
Migut.B00189 Erythranthe guttata HOM05D007030 ORTHO05D009159 1.7e-192 676.4 446 73.5
DCAR_022800 Daucus carota HOM05D007030 ORTHO05D009159 2.2e-192 676.0 428 76.6
EL10Ac9g21613 Beta vulgaris HOM05D007030 ORTHO05D009159 8.2e-192 674.1 423 77.1
HanXRQChr15g0479121 Helianthus annuus HOM05D007030 ORTHO05D009159 3.1e-191 672.2 437 73.5
SalBow6G2462 Salvia bowleyana HOM05D007030 ORTHO05D009159 5.3e-191 671.4 461 70.7
COL.COLO4_26024 Corchorus olitorius HOM05D007030 ORTHO05D009159 9.1e-191 670.6 562 63.3
Actinidia11760 Actinidia chinensis HOM05D007030 ORTHO05D009159 2.0e-190 669.5 486 70.2
Hund06268 Selenicereus undatus HOM05D007030 ORTHO05D009159 2.0e-190 669.5 446 72.9
BraA09t41218Z Brassica rapa HOM05D007030 ORTHO05D009159 2.6e-190 669.1 458 70.1
BcaNung06382 Brassica carinata HOM05D007030 ORTHO05D009159 4.5e-190 668.3 457 70.5
Sp4g00540 Schrenkiella parvula HOM05D007030 ORTHO05D009159 4.5e-190 668.3 490 68.4
Cc02_g17050 Coffea canephora HOM05D007030 ORTHO05D009159 7.7e-190 667.5 487 67.6
AL4G10540 Arabidopsis lyrata HOM05D007030 ORTHO05D009159 1.7e-189 666.4 421 75.3
C08p41600 Brassica napus HOM05D007030 ORTHO05D009159 2.2e-189 666.0 457 70.2
BolC8t51722H Brassica oleracea HOM05D007030 ORTHO05D009159 4.2e-188 661.8 422 74.2
Thhalv10000118m.g Eutrema salsugineum HOM05D007030 ORTHO05D009159 4.2e-188 661.8 441 72.6
AUR62010413 Chenopodium quinoa HOM05D007030 ORTHO05D009159 2.7e-187 659.1 421 75.8
Ca_20921_v3 Cicer arietinum L. HOM05D007030 ORTHO05D009159 1.8e-186 656.4 439 73.3
CAN.G341.5 Capsicum annuum HOM05D007030 ORTHO05D009159 3.0e-186 655.6 447 70.9
ClCG11G003990 Citrullus lanatus HOM05D007030 ORTHO05D009159 2.8e-184 649.0 488 68.0
FvH4_2g10090 Fragaria vesca HOM05D007030 ORTHO05D009159 8.2e-184 647.5 381 81.4
MELO3C023343.2 Cucumis melo HOM05D007030 ORTHO05D009159 2.0e-182 642.9 385 80.0
arahy.Tifrunner.gnm1.ann1.EU2PQ7 Arachis hypogaea HOM05D007030 ORTHO05D009159 1.3e-181 640.2 440 73.0
Sed0020159 Sechium edule HOM05D007030 ORTHO05D009159 2.2e-181 639.4 389 79.2
Lsat_1_v5_gn_3_43860 Lactuca sativa HOM05D007030 ORTHO05D009159 3.2e-180 635.6 498 65.5
Thecc.02G077800 Theobroma cacao HOM05D007030 ORTHO05D009159 6.7e-178 627.9 380 80.8
SGA_v2.0_scaffold58G20475 Striga asiatica HOM05D007030 ORTHO05D009159 1.6e-174 616.7 488 64.3
CARHR112250 Cardamine hirsuta HOM05D007030 ORTHO05D009159 4.5e-174 615.1 384 75.8
PSO210G4381 Papaver somniferum HOM05D007030 ORTHO05D009159 1.9e-172 609.8 451 67.4
Carub.0004s0040 Capsella rubella HOM05D007030 ORTHO05D009159 9.4e-172 607.4 385 76.4
Hma1.2p1_0851F.1_g228290 Hydrangea macrophylla HOM05D007030 ORTHO05D009159 4.7e-171 605.1 440 70.5
AT2G21370 Arabidopsis thaliana HOM05D007030 ORTHO05D009159 1.8e-170 603.2 381 75.9
TPR.G16229 Trifolium pratense HOM05D007030 ORTHO05D009159 2.6e-169 599.4 409 72.1
Atru.chr5.3113 Acer truncatum HOM05D007030 ORTHO05D009159 1.7e-165 586.6 336 83.0
Psat7g182480 Pisum sativum HOM05D007030 ORTHO05D009159 2.2e-165 586.3 396 71.2
VMungo1127G1504 Vigna mungo HOM05D007030 ORTHO05D009159 2.2e-165 586.3 432 69.4
ATR0661G201 Amborella trichopoda HOM05D007030 ORTHO05D009159 3.0e-162 575.9 436 65.4
Duzib052G0475 Durio zibethinus HOM05D007030 ORTHO05D009159 3.0e-162 575.9 488 62.5
AUR62016803 Chenopodium quinoa HOM05D007030 ORTHO05D009159 1.3e-160 570.5 439 67.0
Mapoly0010s0072 Marchantia polymorpha HOM05D007030 ORTHO05D009159 3.3e-156 555.8 435 63.4
SMO115G0266 Selaginella moellendorffii HOM05D007030 ORTHO05D009159 8.0e-155 551.2 443 62.3
Aa31LG7G15160 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.4e-151 540.4 352 74.1
Zm00001eb094750 Zea mays HOM05D007030 ORTHO05D009159 5.4e-151 538.5 445 62.7
BcaNung06381 Brassica carinata HOM05D007030 ORTHO05D009159 7.8e-142 508.1 326 73.3
Sc14g0001940 Simmondsia chinensis HOM05D007030 ORTHO05D009159 1.6e-139 500.4 313 76.0
unitig_744.g24262 Utricularia gibba HOM05D007030 ORTHO05D009159 5.1e-133 478.8 430 57.7
CDE09G0328 Ceratophyllum demersum HOM05D007030 ORTHO05D009159 2.8e-123 446.4 483 50.9
Haze_02254 Corylus avellana HOM05D007030 ORTHO05D009159 1.9e-116 423.7 325 67.4
Cre02.g098150 Chlamydomonas reinhardtii HOM05D007030 ORTHO05D009159 2.5e-116 423.3 462 49.4
Haze_02264 Corylus avellana HOM05D007030 ORTHO05D009159 7.3e-116 421.8 325 67.4
Peaxi162Scf00684g00133 Petunia axillaris HOM05D007030 ORTHO05D009159 1.4e-111 407.5 310 65.2
Os07g0409200 Oryza sativa ssp. japonica HOM05D007030 ORTHO05D009159 2.0e-105 387.1 246 74.0
MCO15G291 Micromonas commoda HOM05D007030 ORTHO05D009159 6.9e-98 362.1 438 46.3
Solyc11g042950.1 Solanum lycopersicum HOM05D007030 ORTHO05D009159 1.7e-88 330.9 202 75.2
AagrBONN_evm.TU.Sc2ySwM_117.2558 Anthoceros agrestis HOM05D007030 ORTHO05D009159 3.0e-85 320.1 264 61.4
RcHm_v2.0_Chr4g0423361 Rosa chinensis HOM05D007030 ORTHO05D009159 6.9e-82 308.9 225 70.2
Haze_02269 Corylus avellana HOM05D007030 ORTHO05D009159 1.0e-77 295.0 211 71.1
THA.LOC104804536 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 8.2e-67 258.8 179 68.7
PRCOL_00006836 Prasinoderma coloniale HOM05D007030 ORTHO05D009159 1.7e-64 251.1 461 38.4
RcHm_v2.0_Chr3g0496591 Rosa chinensis HOM05D007030 ORTHO05D009159 2.9e-64 250.4 306 50.0
TPR.G30522 Trifolium pratense HOM05D007030 ORTHO05D000007 5.0e-56 223.0 164 67.1
arahy.Tifrunner.gnm1.ann1.L6T79S Arachis hypogaea HOM05D007030 ORTHO05D009159 1.2e-38 165.2 93 82.8
THA.LOC104804117 Tarenaya hassleriana HOM05D007030 ORTHO05D009159 9.8e-36 155.6 109 67.9
PGSC0003DMG400009674 Solanum tuberosum HOM05D007030 ORTHO05D028676 7.3e-31 139.4 85 81.2
Glyma.12G038500 Glycine max HOM05D007030 ORTHO05D028676 1.8e-29 134.8 89 73.0
CDE09G1160 Ceratophyllum demersum HOM05D007030 ORTHO05D028676 3.5e-17 94.0 58 72.4
QL11p045724 Quercus lobata HOM05D007030 ORTHO05D028676 9.9e-12 75.9 42 85.7
Aa31LG7G15150 Aethionema arabicum HOM05D007030 ORTHO05D009159 1.0e-08 65.9 97 46.4


User provided reference genes

Program Settings