Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 1.6e-45 185.7 90 100.0
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.3e-30 134.4 92 79.3
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 5.6e-30 134.0 92 78.3
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 2.1e-29 132.1 93 72.0
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 2.1e-29 132.1 92 71.7
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 2.1e-29 132.1 92 71.7
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 8.1e-29 130.2 87 73.6
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 1.4e-28 129.4 94 72.3
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 8.9e-28 126.7 88 68.2
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.2e-27 126.3 82 74.4
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 1.5e-27 125.9 81 75.3
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 2.0e-27 125.6 90 68.9
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.3e-26 122.9 95 67.4
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.3e-26 122.9 95 67.4
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.3e-26 122.9 95 67.4
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 2.9e-26 121.7 83 73.5
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 2.9e-26 121.7 81 72.8
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 3.7e-26 121.3 95 67.4
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 4.9e-26 120.9 95 66.3
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 6.4e-26 120.6 94 68.1
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 8.3e-26 120.2 95 66.3
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 1.1e-25 119.8 82 70.7
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 2.4e-25 118.6 90 66.7
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 3.2e-25 118.2 92 70.7
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 9.2e-25 116.7 92 69.6
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 3.5e-24 114.8 84 67.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 5.1e-23 110.9 88 67.0
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 1.1e-22 109.8 86 60.5
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 1.9e-22 109.0 95 61.1
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 1.9e-22 109.0 90 63.3
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 1.9e-22 109.0 88 60.2
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 2.5e-22 108.6 83 65.1
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 5.6e-22 107.5 97 60.8
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 7.3e-22 107.1 81 66.7
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 1.2e-21 106.3 92 59.8
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 1.2e-21 106.3 93 60.2
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 2.8e-21 105.1 90 61.1
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 6.2e-21 104.0 80 67.5
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.8e-20 102.4 85 64.7
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 3.1e-20 101.7 69 69.6
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.1e-20 101.7 84 64.3
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 5.2e-20 100.9 87 65.5
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 5.2e-20 100.9 87 57.5
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 5.2e-20 100.9 92 59.8
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 6.8e-20 100.5 87 57.5
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 6.8e-20 100.5 87 57.5
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 8.9e-20 100.1 62 80.6
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 2.0e-19 99.0 90 58.9
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 2.0e-19 99.0 86 62.8
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 2.6e-19 98.6 93 60.2
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 5.8e-19 97.4 93 59.1
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 9.9e-19 96.7 81 61.7
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 4.9e-18 94.4 82 59.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 1.1e-17 93.2 80 63.8
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 1.4e-17 92.8 80 55.0
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 1.4e-17 92.8 93 57.0
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 1.4e-17 92.8 92 54.3
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 1.2e-16 89.7 107 44.9
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 1.2e-16 89.7 107 44.9
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 1.6e-16 89.4 108 44.4
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 3.5e-16 88.2 107 43.9
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 6.0e-16 87.4 109 43.1
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 1.7e-15 85.9 63 65.1
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 5.1e-15 84.3 76 59.2
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 6.6e-15 84.0 72 59.7
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 6.6e-15 84.0 72 59.7
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.5e-14 82.8 107 42.1
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 1.9e-14 82.4 103 44.7
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 2.5e-14 82.0 99 45.5
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.3e-14 81.6 78 56.4
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 1.2e-13 79.7 78 55.1
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 1.2e-13 79.7 76 57.9
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 2.1e-13 79.0 82 59.8
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 2.1e-13 79.0 106 40.6
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 2.1e-13 79.0 106 40.6
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 3.6e-13 78.2 106 40.6
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 4.7e-13 77.8 107 40.2
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 4.7e-13 77.8 107 40.2
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 6.2e-13 77.4 108 39.8
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 6.2e-13 77.4 98 43.9
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 3.8e-10 68.2 85 38.8
SEGI_32080 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.1e-09 66.6 51 54.9
SMO196G0045 Selaginella moellendorffii HOM05D002359 ORTHO05D002394 1.9e-09 65.9 63 50.8
Actinidia17154 Actinidia chinensis HOM05D002019 ORTHO05D002150 2.4e-09 65.5 71 47.9
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 2.4e-09 65.5 84 42.9
Actinidia40403 Actinidia chinensis HOM05D002019 ORTHO05D002150 3.2e-09 65.1 71 47.9
Dinv19090 Davidia involucrata HOM05D002019 ORTHO05D002150 3.2e-09 65.1 50 58.0
CSS0034970 Camellia sinensis var. sinensis HOM05D002019 ORTHO05D002150 7.1e-09 63.9 50 58.0
Oeu012515.1 Olea europaea HOM05D002019 ORTHO05D002150 7.1e-09 63.9 63 50.8
Aqoxy3G04192 Aquilegia oxysepala HOM05D002019 ORTHO05D002150 1.2e-08 63.2 88 42.0
CiPaw.03G078600 Carya illinoinensis HOM05D002019 ORTHO05D002150 1.2e-08 63.2 50 58.0
DCAR_014138 Daucus carota HOM05D002019 ORTHO05D002150 1.2e-08 63.2 50 60.0
GSVIVG01035279001 Vitis vinifera HOM05D002019 ORTHO05D002150 1.2e-08 63.2 49 61.2
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 2.1e-08 62.4 102 40.2
TAR629G3490 Trochodendron aralioides HOM05D002019 ORTHO05D002150 2.1e-08 62.4 72 45.8
Cc07_g12670 Coffea canephora HOM05D002019 ORTHO05D002150 3.5e-08 61.6 50 60.0
TAR622G0329 Trochodendron aralioides HOM05D002019 ORTHO05D002150 3.5e-08 61.6 74 45.9
arahy.Tifrunner.gnm1.ann1.TVU1YR Arachis hypogaea HOM05D002019 ORTHO05D002150 4.6e-08 61.2 53 62.3
MSTRG.15624 Avicennia marina HOM05D002019 ORTHO05D002150 4.6e-08 61.2 50 56.0
Glyma.11G208700 Glycine max HOM05D002019 ORTHO05D002150 4.6e-08 61.2 52 55.8
Lsat_1_v5_gn_3_69461 Lactuca sativa HOM05D002019 ORTHO05D002150 4.6e-08 61.2 72 48.6
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 4.6e-08 61.2 61 45.9
arahy.Tifrunner.gnm1.ann1.SQC659 Arachis hypogaea HOM05D002019 ORTHO05D002150 7.8e-08 60.5 50 60.0
arahy.Tifrunner.gnm1.ann1.ZUC4D4 Arachis hypogaea HOM05D002019 ORTHO05D002150 7.8e-08 60.5 50 60.0
Nn4g24832 Nelumbo nucifera HOM05D002019 ORTHO05D002150 7.8e-08 60.5 50 52.0
Rhsim10G0186200 Rhododendron simsii HOM05D002019 ORTHO05D002150 7.8e-08 60.5 50 58.0
TWI74G0642 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 7.8e-08 60.5 50 58.0
Atru.chr1.1979 Acer truncatum HOM05D002019 ORTHO05D002150 1.0e-07 60.1 50 54.0
SEGI_14454 Sequoiadendron giganteum HOM05D002019 ORTHO05D002150 1.0e-07 60.1 51 51.0
TAR383G0675 Trochodendron aralioides HOM05D002019 ORTHO05D002150 1.0e-07 60.1 65 47.7
ATR0705G013 Amborella trichopoda HOM05D002019 ORTHO05D002150 1.3e-07 59.7 74 43.2
arahy.Tifrunner.gnm1.ann1.EZ0DFJ Arachis hypogaea HOM05D002019 ORTHO05D002150 1.3e-07 59.7 53 60.4
HanXRQChr15g0485231 Helianthus annuus HOM05D002019 ORTHO05D002150 1.3e-07 59.7 75 48.0
MBI03_g24044_MAGBIO Magnolia biondii HOM05D002019 ORTHO05D002150 1.3e-07 59.7 74 43.2
Lalb_Chr15g0085331 Lupinus albus HOM05D002019 ORTHO05D002150 2.3e-07 58.9 64 50.0
Nitab4.5_0000091g0300 Nicotiana tabacum HOM05D002019 ORTHO05D002150 3.0e-07 58.5 80 45.0
COL.COLO4_18098 Corchorus olitorius HOM05D002359 ORTHO05D002394 3.9e-07 58.2 52 51.9
Glyma.02G239800 Glycine max HOM05D002019 ORTHO05D002150 3.9e-07 58.2 73 46.6
Glyma.18G045200 Glycine max HOM05D002019 ORTHO05D002150 3.9e-07 58.2 50 56.0
Peaxi162Scf00521g00028 Petunia axillaris HOM05D002019 ORTHO05D002150 3.9e-07 58.2 50 56.0
SalBow5G0949 Salvia bowleyana HOM05D002019 ORTHO05D002150 3.9e-07 58.2 50 56.0
Cfa007741 Carpinus fangiana HOM05D002019 ORTHO05D002150 5.1e-07 57.8 68 47.1
Hma1.2p1_0034F.1_g021470 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 5.1e-07 57.8 50 56.0
Zm00001eb353580 Zea mays HOM05D002019 ORTHO05D010005 5.1e-07 57.8 63 47.6
ECA246G2032 Erigeron canadensis HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 54.0
HanXRQChr16g0532381 Helianthus annuus HOM05D002019 ORTHO05D002150 6.6e-07 57.4 76 44.7
Lj6g0022787 Lotus japonicus HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 54.0
LjContig00141g0027651 Lotus japonicus HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 58.0
Lalb_Chr12g0200151 Lupinus albus HOM05D002359 ORTHO05D002394 6.6e-07 57.4 49 55.1
Phvul.006G085800 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 54.0
Phvul.008G241900 Phaseolus vulgaris HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 58.0
PGSC0003DMG402024074 Solanum tuberosum HOM05D002019 ORTHO05D002150 6.6e-07 57.4 50 54.0
Thecc.06G101300 Theobroma cacao HOM05D002019 ORTHO05D002150 6.6e-07 57.4 59 49.2
GSVIVG01035317001 Vitis vinifera HOM05D002019 ORTHO05D002150 6.6e-07 57.4 73 42.5
CDE05G2539 Ceratophyllum demersum HOM05D002019 ORTHO05D002150 8.7e-07 57.0 60 48.3
Hma1.2p1_0430F.1_g151290 Hydrangea macrophylla HOM05D002019 ORTHO05D002150 8.7e-07 57.0 51 51.0
Solyc03g031890.3 Solanum lycopersicum HOM05D002019 ORTHO05D002150 8.7e-07 57.0 81 40.7
Sopen03g005760 Solanum pennellii HOM05D002019 ORTHO05D002150 8.7e-07 57.0 81 40.7
VMungo0540G2448 Vigna mungo HOM05D002019 ORTHO05D002150 8.7e-07 57.0 50 54.0
Haze_14335 Corylus avellana HOM05D002019 ORTHO05D002150 1.1e-06 56.6 69 47.8
Lj4P371T13 Lonicera japonica HOM05D002019 ORTHO05D002150 1.1e-06 56.6 75 41.3
Medtr3g064350 Medicago truncatula HOM05D002019 ORTHO05D002150 1.1e-06 56.6 50 54.0
Psat5g145360 Pisum sativum HOM05D002019 ORTHO05D002150 1.1e-06 56.6 50 56.0
PGR142G1562 Punica granatum HOM05D002019 ORTHO05D002150 1.1e-06 56.6 51 51.0
Ah.09g230520 Amaranthus hybridus HOM05D002019 ORTHO05D002150 1.5e-06 56.2 60 48.3
Os05g0524100 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.5e-06 56.2 62 48.4
Cfa002989 Carpinus fangiana HOM05D002359 ORTHO05D002394 1.9e-06 55.8 52 53.8
Glyma.14G209000 Glycine max HOM05D002019 ORTHO05D002150 1.9e-06 55.8 50 54.0
Nn6g35346 Nelumbo nucifera HOM05D002019 ORTHO05D002150 1.9e-06 55.8 51 49.0
Solyc06g066420.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 1.9e-06 55.8 77 42.9
Cpa.g.sc25.25 Carica papaya HOM05D002019 ORTHO05D002150 2.5e-06 55.5 49 55.1
CiPaw.04G143200 Carya illinoinensis HOM05D002359 ORTHO05D002394 2.5e-06 55.5 52 53.8
Medtr1g045430 Medicago truncatula HOM05D004099 ORTHO05D004777 2.5e-06 55.5 62 46.8
Cfa003163 Carpinus fangiana HOM05D002019 ORTHO05D002150 3.3e-06 55.1 53 52.8
Hund26288 Selenicereus undatus HOM05D002019 ORTHO05D002150 3.3e-06 55.1 51 52.9
GSVIVG01015284001 Vitis vinifera HOM05D002019 ORTHO05D002150 3.3e-06 55.1 71 42.3
TPR.G37435 Trifolium pratense HOM05D002019 ORTHO05D002150 4.3e-06 54.7 60 48.3
TWI12G1440 Tripterygium wilfordii HOM05D002019 ORTHO05D002150 4.3e-06 54.7 55 47.3
VMungo0647G2085 Vigna mungo HOM05D002019 ORTHO05D002150 4.3e-06 54.7 50 56.0
Zm00001eb187410 Zea mays HOM05D002019 ORTHO05D002150 4.3e-06 54.7 69 46.4
ATR0598G330 Amborella trichopoda HOM05D002359 ORTHO05D002394 5.6e-06 54.3 49 49.0
Haze_26012 Corylus avellana HOM05D002359 ORTHO05D002394 5.6e-06 54.3 52 51.9
MELO3C015423.2 Cucumis melo HOM05D002019 ORTHO05D002150 5.6e-06 54.3 61 47.5
Dinv36721 Davidia involucrata HOM05D002019 ORTHO05D002150 5.6e-06 54.3 51 51.0
PGSC0003DMG400016497 Solanum tuberosum HOM05D002019 ORTHO05D002150 5.6e-06 54.3 79 41.8
AagrBONN_evm.TU.Sc2ySwM_117.1257 Anthoceros agrestis HOM05D002359 ORTHO05D002394 7.3e-06 53.9 54 51.9
CAN.G1759.7 Capsicum annuum HOM05D002019 ORTHO05D002150 7.3e-06 53.9 52 53.8
CiPaw.03G206500 Carya illinoinensis HOM05D002359 ORTHO05D002394 7.3e-06 53.9 59 49.2
CDE04G2528 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 7.3e-06 53.9 51 45.1
CDE06G0156 Ceratophyllum demersum HOM05D002359 ORTHO05D002394 7.3e-06 53.9 51 45.1
Dinv30427 Davidia involucrata HOM05D002019 ORTHO05D002150 7.3e-06 53.9 51 49.0
HanXRQChr12g0360661 Helianthus annuus HOM05D002019 ORTHO05D002150 7.3e-06 53.9 59 50.8
Phvul.003G130700 Phaseolus vulgaris HOM05D002359 ORTHO05D002394 7.3e-06 53.9 57 47.4
Solyc03g121090.4 Solanum lycopersicum HOM05D002019 ORTHO05D002150 7.3e-06 53.9 51 49.0
Sopen03g039920 Solanum pennellii HOM05D002019 ORTHO05D002150 7.3e-06 53.9 51 49.0
PGSC0003DMG400002524 Solanum tuberosum HOM05D002019 ORTHO05D002150 7.3e-06 53.9 51 49.0
arahy.Tifrunner.gnm1.ann1.GLDH4J Arachis hypogaea HOM05D002359 ORTHO05D002394 9.6e-06 53.5 57 47.4
Glyma.13G110500 Glycine max HOM05D002359 ORTHO05D002394 9.6e-06 53.5 54 50.0
Lalb_Chr05g0223301 Lupinus albus HOM05D002019 ORTHO05D002150 9.6e-06 53.5 51 49.0
Nn8g39043 Nelumbo nucifera HOM05D002019 ORTHO05D002150 9.6e-06 53.5 57 40.4
Peaxi162Scf00288g00109 Petunia axillaris HOM05D004099 ORTHO05D004777 9.6e-06 53.5 78 35.9
Sc18g0002550 Simmondsia chinensis HOM05D002359 ORTHO05D002394 9.6e-06 53.5 52 48.1
TPR.G12555 Trifolium pratense HOM05D002359 ORTHO05D002394 9.6e-06 53.5 49 51.0
VMungo1215G3089 Vigna mungo HOM05D002359 ORTHO05D002394 9.6e-06 53.5 57 47.4


User provided reference genes

Program Settings