Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G055600 Carya illinoinensis HOM05D005562 ORTHO05D007785 1.7e-227 792.3 394 100.0
QL11p038618 Quercus lobata HOM05D005562 ORTHO05D007785 9.1e-202 706.8 393 87.5
Cfa005417 Carpinus fangiana HOM05D005562 ORTHO05D007785 1.7e-200 702.6 394 87.6
Haze_01878 Corylus avellana HOM05D005562 ORTHO05D007785 2.2e-200 702.2 393 87.8
FvH4_2g07021 Fragaria vesca HOM05D005562 ORTHO05D007785 3.0e-189 665.2 394 83.0
Prupe.8G115600 Prunus persica HOM05D005562 ORTHO05D007785 3.0e-189 665.2 394 82.2
MD10G1088500 Malus domestica HOM05D005562 ORTHO05D007785 5.2e-189 664.5 397 82.4
MD00G1050500 Malus domestica HOM05D005562 ORTHO05D007785 4.4e-188 661.4 394 81.5
FAN27G1497 Fragaria x ananassa HOM05D005562 ORTHO05D007785 1.7e-187 659.4 394 82.7
RcHm_v2.0_Chr6g0259381 Rosa chinensis HOM05D005562 ORTHO05D007785 5.4e-186 654.4 394 82.5
TAR381G1284 Trochodendron aralioides HOM05D005562 ORTHO05D007785 1.9e-183 646.0 404 79.0
Ciclev10028560m.g Citrus clementina HOM05D005562 ORTHO05D007785 1.2e-182 643.3 407 79.6
GSVIVG01031808001 Vitis vinifera HOM05D005562 ORTHO05D007785 1.5e-180 636.3 352 87.2
Thecc.02G095000 Theobroma cacao HOM05D005562 ORTHO05D007785 5.8e-180 634.4 403 78.7
MELO3C021919.2 Cucumis melo HOM05D005562 ORTHO05D007785 9.8e-180 633.6 394 79.2
Duzib248G1341 Durio zibethinus HOM05D005562 ORTHO05D007785 2.9e-179 632.1 401 79.1
Dinv23596 Davidia involucrata HOM05D005562 ORTHO05D001378 3.7e-179 631.7 398 79.1
Nn1g04154 Nelumbo nucifera HOM05D005562 ORTHO05D007785 4.9e-179 631.3 404 77.0
Atru.chr5.2830 Acer truncatum HOM05D005562 ORTHO05D007785 6.4e-179 630.9 405 78.5
ClCG09G017590 Citrullus lanatus HOM05D005562 ORTHO05D007785 1.4e-178 629.8 413 76.5
MBI16_g19905_MAGBIO Magnolia biondii HOM05D005562 ORTHO05D007785 1.4e-178 629.8 404 76.7
TAR625G0430 Trochodendron aralioides HOM05D005562 ORTHO05D007785 2.7e-177 625.5 386 79.0
CsaV3_2G014210 Cucumis sativus L. HOM05D005562 ORTHO05D007785 7.8e-177 624.0 394 77.4
Sed0010996 Sechium edule HOM05D005562 ORTHO05D007785 1.3e-176 623.2 388 79.6
Gohir.D13G035800 Gossypium hirsutum HOM05D005562 ORTHO05D007785 1.5e-175 619.8 401 78.1
Hma1.2p1_0584F.1_g183170 Hydrangea macrophylla HOM05D005562 ORTHO05D007785 1.5e-175 619.8 405 76.8
CANSAT25G3890 Cannabis sativa HOM05D005562 ORTHO05D007785 4.3e-175 618.2 372 79.6
Eucgr.I01182 Eucalyptus grandis HOM05D005562 ORTHO05D007785 3.6e-174 615.1 401 75.6
Gohir.A13G037500 Gossypium hirsutum HOM05D005562 ORTHO05D007785 4.7e-174 614.8 401 77.6
Aqoxy5G01421 Aquilegia oxysepala HOM05D005562 ORTHO05D007785 1.8e-173 612.8 386 78.0
Lalb_Chr17g0338301 Lupinus albus HOM05D005562 ORTHO05D007785 2.0e-172 609.4 380 77.6
THA.LOC104814570 Tarenaya hassleriana HOM05D005562 ORTHO05D007785 2.0e-172 609.4 402 75.4
Gorai.013G040500 Gossypium raimondii HOM05D005562 ORTHO05D007785 7.5e-172 607.4 427 73.5
TPR.G11154 Trifolium pratense HOM05D005562 ORTHO05D007785 3.7e-171 605.1 391 75.2
EL10Ac1g01621 Beta vulgaris HOM05D005562 ORTHO05D007785 6.4e-171 604.4 392 76.8
Lj9A361T59 Lonicera japonica HOM05D005562 ORTHO05D007785 1.9e-170 602.8 402 75.6
Psat6g096120 Pisum sativum HOM05D005562 ORTHO05D007785 4.1e-170 601.7 380 76.1
TPR.G14865 Trifolium pratense HOM05D005562 ORTHO05D007785 4.1e-170 601.7 395 74.9
Potri.004G145700 Populus trichocarpa HOM05D005562 ORTHO05D007785 5.4e-170 601.3 398 75.4
ATR0225G001 Amborella trichopoda HOM05D005562 ORTHO05D007785 2.1e-169 599.4 356 80.3
Manes.15G144000 Manihot esculenta HOM05D005562 ORTHO05D007785 1.3e-168 596.7 402 74.1
AUR62042921 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.3e-168 595.9 346 81.5
CSS0049808 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D007785 5.1e-168 594.7 401 73.8
Glyma.07G179700 Glycine max HOM05D005562 ORTHO05D007785 5.1e-168 594.7 373 76.7
EL10Ac3g06682 Beta vulgaris HOM05D005562 ORTHO05D007785 6.6e-168 594.3 346 81.5
Glyma.20G009400 Glycine max HOM05D005562 ORTHO05D007785 8.6e-168 594.0 395 73.4
BcaC04g22480 Brassica carinata HOM05D005562 ORTHO05D007785 4.3e-167 591.7 391 74.9
BolC9t54784H Brassica oleracea HOM05D005562 ORTHO05D007785 4.3e-167 591.7 391 74.9
Lj2g0016235 Lotus japonicus HOM05D005562 ORTHO05D007785 4.3e-167 591.7 395 73.2
Oeu057671.1 Olea europaea HOM05D005562 ORTHO05D007785 5.6e-167 591.3 402 74.4
Phvul.003G012000 Phaseolus vulgaris HOM05D005562 ORTHO05D007785 7.3e-167 590.9 388 73.2
Cc07_g19550 Coffea canephora HOM05D005562 ORTHO05D007785 9.5e-167 590.5 368 79.3
Aa31LG8G16860 Aethionema arabicum HOM05D005562 ORTHO05D007785 1.6e-166 589.7 393 74.6
PGR142G1983 Punica granatum HOM05D005562 ORTHO05D007785 1.6e-166 589.7 401 73.8
VMungo1215G0206 Vigna mungo HOM05D005562 ORTHO05D007785 2.8e-166 589.0 367 76.0
Sp3g33250 Schrenkiella parvula HOM05D005562 ORTHO05D007785 4.7e-166 588.2 399 73.7
Migut.B00304 Erythranthe guttata HOM05D005562 ORTHO05D007785 8.1e-166 587.4 343 83.1
BraA09t37197Z Brassica rapa HOM05D005562 ORTHO05D007785 1.4e-165 586.6 388 74.7
Ca_12473_v3 Cicer arietinum L. HOM05D005562 ORTHO05D007785 1.4e-165 586.6 389 73.8
COL.COLO4_11726 Corchorus olitorius HOM05D005562 ORTHO05D007785 1.8e-165 586.3 371 78.7
BcaB07g31395 Brassica carinata HOM05D005562 ORTHO05D007785 2.3e-165 585.9 393 74.0
C09p18820 Brassica napus HOM05D005562 ORTHO05D007785 2.3e-165 585.9 391 74.2
Medtr1g012540 Medicago truncatula HOM05D005562 ORTHO05D007785 3.1e-165 585.5 359 78.3
Rhsim05G0079900 Rhododendron simsii HOM05D005562 ORTHO05D007785 3.1e-165 585.5 394 73.6
A09p15570 Brassica napus HOM05D005562 ORTHO05D007785 1.2e-164 583.6 388 74.5
Thhalv10023506m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 2.0e-164 582.8 390 74.1
SalBow3G1434 Salvia bowleyana HOM05D005562 ORTHO05D007785 4.4e-164 581.6 398 75.1
CARHR110380 Cardamine hirsuta HOM05D005562 ORTHO05D007785 5.8e-164 581.3 402 73.4
HPP92_018726 Vanilla planifolia HOM05D005562 ORTHO05D007785 5.8e-164 581.3 354 78.0
AT2G19940 Arabidopsis thaliana HOM05D005562 ORTHO05D007785 9.9e-164 580.5 349 81.1
TWI79G1184 Tripterygium wilfordii HOM05D005562 ORTHO05D007785 1.3e-163 580.1 406 71.4
unitig_26.g10242 Utricularia gibba HOM05D005562 ORTHO05D007785 3.8e-163 578.6 353 80.5
Carub.0003s3419 Capsella rubella HOM05D005562 ORTHO05D007785 8.4e-163 577.4 399 72.7
SGA_v2.0_scaffold32G13119 Striga asiatica HOM05D005562 ORTHO05D007785 1.1e-162 577.0 341 81.2
MSTRG.5375 Avicennia marina HOM05D005562 ORTHO05D007785 3.2e-162 575.5 398 73.4
Peaxi162Scf00016g01531 Petunia axillaris HOM05D005562 ORTHO05D007785 7.1e-162 574.3 390 75.1
CAN.G322.41 Capsicum annuum HOM05D005562 ORTHO05D007785 2.1e-161 572.8 352 80.7
arahy.Tifrunner.gnm1.ann1.4TQ1KW Arachis hypogaea HOM05D005562 ORTHO05D007785 3.5e-161 572.0 422 69.0
PSO170G1474 Papaver somniferum HOM05D005562 ORTHO05D007785 6.0e-161 571.2 399 71.9
FAN24G3180 Fragaria x ananassa HOM05D005562 ORTHO05D001378 1.3e-160 570.1 368 77.4
DCAR_022068 Daucus carota HOM05D005562 ORTHO05D001378 1.7e-160 569.7 367 77.1
arahy.Tifrunner.gnm1.ann1.ZFI36T Arachis hypogaea HOM05D005562 ORTHO05D007785 5.1e-160 568.2 379 74.1
PGSC0003DMG402025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.1e-160 568.2 352 80.4
Sopen01g050880 Solanum pennellii HOM05D005562 ORTHO05D007785 6.6e-160 567.8 352 79.8
PSO210G1477 Papaver somniferum HOM05D005562 ORTHO05D007785 1.1e-159 567.0 394 72.1
Solyc01g108660.4 Solanum lycopersicum HOM05D005562 ORTHO05D007785 1.1e-159 567.0 352 79.5
FAN27G3443 Fragaria x ananassa HOM05D005562 ORTHO05D001378 2.5e-159 565.8 368 77.2
Ah.13g074710 Amaranthus hybridus HOM05D005562 ORTHO05D007785 5.6e-159 564.7 396 72.5
CDE01G0106 Ceratophyllum demersum HOM05D005562 ORTHO05D007785 6.2e-158 561.2 327 81.7
SalBow4G0329 Salvia bowleyana HOM05D005562 ORTHO05D007785 1.1e-157 560.5 439 67.4
Sc06g0001440 Simmondsia chinensis HOM05D005562 ORTHO05D007785 2.4e-157 559.3 314 84.4
Nitab4.5_0003726g0070 Nicotiana tabacum HOM05D005562 ORTHO05D007785 1.2e-156 557.0 352 78.7
Os03g0617900 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 5.8e-156 554.7 353 77.1
BcaC04g19978 Brassica carinata HOM05D005562 ORTHO05D007785 7.1e-154 547.7 360 75.0
Zm00001eb051410 Zea mays HOM05D005562 ORTHO05D007785 7.1e-154 547.7 349 75.9
Lsat_1_v5_gn_9_108961 Lactuca sativa HOM05D005562 ORTHO05D007785 6.0e-153 544.7 393 69.2
Os10g0494200 Oryza sativa ssp. japonica HOM05D005562 ORTHO05D007785 1.0e-152 543.9 353 75.6
Mapoly0036s0058 Marchantia polymorpha HOM05D005562 ORTHO05D007785 2.3e-152 542.7 344 74.7
HanXRQChr13g0402421 Helianthus annuus HOM05D005562 ORTHO05D007785 3.9e-152 542.0 356 74.2
AagrBONN_evm.TU.Sc2ySwM_117.3897 Anthoceros agrestis HOM05D005562 ORTHO05D007785 1.5e-151 540.0 355 72.1
HanXRQChr16g0528561 Helianthus annuus HOM05D005562 ORTHO05D007785 1.6e-150 536.6 356 73.6
SMO116G0475 Selaginella moellendorffii HOM05D005562 ORTHO05D007785 8.1e-150 534.3 394 68.0
ECA240G1421 Erigeron canadensis HOM05D005562 ORTHO05D007785 1.8e-149 533.1 383 70.0
PGSC0003DMG401025903 Solanum tuberosum HOM05D005562 ORTHO05D007785 5.3e-149 531.6 352 76.4
BolC9t57765H Brassica oleracea HOM05D005562 ORTHO05D007785 1.2e-148 530.4 382 70.4
Pp3c8_22120 Physcomitrium patens HOM05D005562 ORTHO05D007785 4.5e-148 528.5 346 73.1
Thhalv10002012m.g Eutrema salsugineum HOM05D005562 ORTHO05D007785 1.3e-147 526.9 399 67.7
Pp3c24_19140 Physcomitrium patens HOM05D005562 ORTHO05D007785 2.9e-147 525.8 346 73.1
Nitab4.5_0001401g0050 Nicotiana tabacum HOM05D005562 ORTHO05D007785 8.4e-147 524.2 366 73.0
AL3G48260 Arabidopsis lyrata HOM05D005562 ORTHO05D007785 1.2e-145 520.4 314 80.9
Hund01581 Selenicereus undatus HOM05D005562 ORTHO05D007785 6.0e-145 518.1 463 60.9
CBR_g5649 Chara braunii HOM05D005562 ORTHO05D001468 3.7e-142 508.8 345 69.6
AUR62035865 Chenopodium quinoa HOM05D005562 ORTHO05D007785 2.4e-141 506.1 573 49.6
vmacro19466 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.3e-139 500.4 397 65.7
vmacro23230 Vaccinium macrocarpon HOM05D005562 ORTHO05D007785 1.0e-131 474.2 292 78.4
FAN15G1080 Fragaria x ananassa HOM05D005562 ORTHO05D001378 4.9e-131 471.9 376 66.5
PRCOL_00005741 Prasinoderma coloniale HOM05D005562 ORTHO05D007785 3.0e-128 462.6 350 64.3
Cre03.g146187 Chlamydomonas reinhardtii HOM05D005562 ORTHO05D007785 5.7e-127 458.4 344 64.0
C09p49210 Brassica napus HOM05D005562 ORTHO05D007785 1.5e-119 433.7 286 74.8
Actinidia17846 Actinidia chinensis HOM05D005562 ORTHO05D007785 1.6e-73 280.8 194 72.2
PSO384G1669 Papaver somniferum HOM05D005562 ORTHO05D007785 3.4e-71 273.1 374 44.7
Cpa.g.sc62.58 Carica papaya HOM05D005562 ORTHO05D007785 1.1e-69 268.1 147 84.4
HanXRQChr10g0318401 Helianthus annuus HOM05D005562 ORTHO05D007785 4.0e-64 249.6 181 64.6
DCAR_021731 Daucus carota HOM05D005562 ORTHO05D007785 1.1e-58 231.5 316 47.2
Cpa.g.sc62.56 Carica papaya HOM05D005562 ORTHO05D007785 7.5e-55 218.8 186 61.8
Cpa.g.sc26.106 Carica papaya HOM05D005562 ORTHO05D007785 2.1e-52 210.7 143 72.0
Oeu021926.1 Olea europaea HOM05D005562 ORTHO05D007785 8.7e-43 178.7 112 78.6
Actinidia17880 Actinidia chinensis HOM05D005562 ORTHO05D007785 2.4e-37 160.6 112 70.5
Cfa027024 Carpinus fangiana HOM05D005562 ORTHO05D121372 1.3e-33 148.3 350 30.0
arahy.Tifrunner.gnm1.ann1.Q8AXKZ Arachis hypogaea HOM05D005562 ORTHO05D007785 1.6e-33 147.9 81 85.2
Actinidia17845 Actinidia chinensis HOM05D005562 ORTHO05D030745 3.8e-30 136.7 84 78.6
SEGI_28239 Sequoiadendron giganteum HOM05D005562 ORTHO05D007785 4.3e-26 123.2 80 72.5
A10p14750 Brassica napus HOM05D005562 ORTHO05D007785 3.8e-14 83.6 53 73.6
CSS0029422 Camellia sinensis var. sinensis HOM05D005562 ORTHO05D111180 3.5e-12 77.0 132 38.6
Glyma.08G079000 Glycine max HOM05D005562 ORTHO05D007785 6.7e-11 72.8 45 73.3
Glyma.08G079050 Glycine max HOM05D005562 ORTHO05D213306 1.1e-10 72.0 64 54.7


User provided reference genes

Program Settings