Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G054900 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.0e-45 184.9 129 100.0
Cfa005429 Carpinus fangiana HOM05D002914 ORTHO05D003196 9.1e-34 147.1 113 76.1
TAR628G0868 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.8e-26 122.9 115 64.3
CiPaw.06G141400 Carya illinoinensis HOM05D002914 ORTHO05D003196 2.7e-25 119.0 118 75.4
Thecc.02G096100 Theobroma cacao HOM05D002914 ORTHO05D003196 2.5e-23 112.5 114 70.2
Duzib052G1256 Durio zibethinus HOM05D002914 ORTHO05D003196 2.1e-22 109.4 115 53.0
COL.COLO4_11718 Corchorus olitorius HOM05D002914 ORTHO05D003196 1.8e-21 106.3 107 72.9
Eucgr.I01175 Eucalyptus grandis HOM05D002914 ORTHO05D003196 4.0e-21 105.1 93 61.3
Gohir.D13G036200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 6.8e-21 104.4 116 72.4
FAN20G0574 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.2e-20 103.6 120 66.7
Hma1.2p1_0584F.1_g183120 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 2.6e-20 102.4 119 47.9
Gohir.A13G037800 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.4e-20 101.7 116 71.6
Gorai.013G040900 Gossypium raimondii HOM05D002914 ORTHO05D003196 4.4e-20 101.7 89 82.0
Duzib248G0090 Durio zibethinus HOM05D002914 ORTHO05D003196 5.7e-20 101.3 83 55.4
Dinv42126 Davidia involucrata HOM05D002914 ORTHO05D003196 9.8e-20 100.5 106 53.8
Nn1g05872 Nelumbo nucifera HOM05D002914 ORTHO05D003196 9.8e-20 100.5 113 60.2
FvH4_2g06840 Fragaria vesca HOM05D002914 ORTHO05D003196 1.3e-19 100.1 120 65.8
FAN15G1103 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.3e-19 100.1 120 65.0
Manes.15G143200 Manihot esculenta HOM05D002914 ORTHO05D003196 1.3e-19 100.1 119 67.2
FAN24G0092 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.7e-19 99.8 121 65.3
Potri.004G144400 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.7e-19 99.8 124 51.6
QL11p038331 Quercus lobata HOM05D002914 ORTHO05D003196 1.7e-19 99.8 104 73.1
Atru.chr5.2809 Acer truncatum HOM05D002914 ORTHO05D003196 2.9e-19 99.0 117 48.7
Phvul.003G294100 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 3.7e-19 98.6 113 60.2
RcHm_v2.0_Chr6g0259071 Rosa chinensis HOM05D002914 ORTHO05D003196 3.7e-19 98.6 118 48.3
Glyma.07G210000 Glycine max HOM05D002914 ORTHO05D003196 8.3e-19 97.4 86 62.8
VMungo0251G3532 Vigna mungo HOM05D002914 ORTHO05D003196 2.4e-18 95.9 113 54.0
Aqoxy5G01394 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 3.2e-18 95.5 103 44.7
Sabra04G0095900 Salix brachista HOM05D002914 ORTHO05D003196 3.2e-18 95.5 118 58.5
Atru.chr13.614 Acer truncatum HOM05D002914 ORTHO05D003196 4.1e-18 95.1 100 48.0
TWI36G0119 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 4.1e-18 95.1 113 47.8
Sabra09G0081200 Salix brachista HOM05D002914 ORTHO05D003196 2.7e-17 92.4 121 56.2
Glyma.02G134900 Glycine max HOM05D002914 ORTHO05D003196 3.5e-17 92.0 83 72.3
Prupe.8G116500 Prunus persica HOM05D002914 ORTHO05D003196 3.5e-17 92.0 76 77.6
Cpa.g.sc62.45 Carica papaya HOM05D002914 ORTHO05D003196 4.6e-17 91.7 124 59.7
Nn5g30169 Nelumbo nucifera HOM05D002914 ORTHO05D003196 7.8e-17 90.9 110 57.3
ClCG08G015580 Citrullus lanatus HOM05D002914 ORTHO05D003196 1.0e-16 90.5 87 55.2
Lalb_Chr16g0384551 Lupinus albus HOM05D002914 ORTHO05D003196 1.7e-16 89.7 122 43.4
TWI31G1086 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 2.3e-16 89.4 118 43.2
PGR142G0527 Punica granatum HOM05D002914 ORTHO05D003196 3.0e-16 89.0 77 68.8
TAR376G1047 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.0e-16 89.0 103 52.4
MELO3C010895.2 Cucumis melo HOM05D002914 ORTHO05D003196 3.9e-16 88.6 99 50.5
Sed0007891 Sechium edule HOM05D002914 ORTHO05D003196 3.9e-16 88.6 113 54.0
Thecc.08G014700 Theobroma cacao HOM05D002914 ORTHO05D003196 3.9e-16 88.6 109 45.0
DCAR_022064 Daucus carota HOM05D002914 ORTHO05D003196 6.6e-16 87.8 89 48.3
SalBow6G6648 Salvia bowleyana HOM05D002914 ORTHO05D003196 8.6e-16 87.4 81 70.4
Solyc01g108330.2 Solanum lycopersicum HOM05D002914 ORTHO05D003196 1.1e-15 87.0 123 43.9
Sopen01g050550 Solanum pennellii HOM05D002914 ORTHO05D003196 1.1e-15 87.0 123 43.9
Psat7g121600 Pisum sativum HOM05D002914 ORTHO05D003196 1.5e-15 86.7 85 71.8
CsaV3_2G028190 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.9e-15 86.3 115 47.8
Hma1.2p1_1589F.1_g292395 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.3e-15 85.1 90 48.9
Hma1.2p1_2598F.1_g325150 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 4.3e-15 85.1 90 48.9
Rhsim05G0080600 Rhododendron simsii HOM05D002914 ORTHO05D003196 5.6e-15 84.7 134 37.3
Potri.014G035400 Populus trichocarpa HOM05D002914 ORTHO05D003196 7.3e-15 84.3 99 43.4
PGSC0003DMG400025804 Solanum tuberosum HOM05D002914 ORTHO05D003196 9.5e-15 84.0 123 42.3
Medtr4g086780 Medicago truncatula HOM05D002914 ORTHO05D003196 1.2e-14 83.6 74 51.4
TAR625G1140 Trochodendron aralioides HOM05D002914 ORTHO05D003196 1.2e-14 83.6 102 45.1
arahy.Tifrunner.gnm1.ann1.HH3ECB Arachis hypogaea HOM05D002914 ORTHO05D003196 2.1e-14 82.8 70 61.4
SGA_v2.0_scaffold58G20610 Striga asiatica HOM05D002914 ORTHO05D003196 2.8e-14 82.4 80 45.0
Ciclev10002811m.g Citrus clementina HOM05D002914 ORTHO05D003196 3.6e-14 82.0 89 55.1
Lalb_Chr05g0219001 Lupinus albus HOM05D002914 ORTHO05D003196 3.6e-14 82.0 117 57.3
QL02p006168 Quercus lobata HOM05D002914 ORTHO05D003196 3.6e-14 82.0 119 40.3
arahy.Tifrunner.gnm1.ann1.ZME7HS Arachis hypogaea HOM05D002914 ORTHO05D003196 6.2e-14 81.3 101 53.5
Ca_18662_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 8.0e-14 80.9 103 58.3
Sed0019897 Sechium edule HOM05D002914 ORTHO05D003196 8.0e-14 80.9 113 38.9
Sc08g0000120 Simmondsia chinensis HOM05D002914 ORTHO05D003196 8.0e-14 80.9 85 63.5
MELO3C028578.2 Cucumis melo HOM05D002914 ORTHO05D003196 1.1e-13 80.5 84 48.8
Gohir.A03G191200 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-13 80.1 117 45.3
Potri.009G106300 Populus trichocarpa HOM05D002914 ORTHO05D003196 1.4e-13 80.1 70 57.1
Ca_15973_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.8e-13 79.7 108 41.7
CsaV3_7G008810 Cucumis sativus L. HOM05D002914 ORTHO05D003196 1.8e-13 79.7 115 43.5
Prupe.1G441900 Prunus persica HOM05D002914 ORTHO05D003196 1.8e-13 79.7 113 57.5
Gorai.005G240100 Gossypium raimondii HOM05D002914 ORTHO05D003196 2.3e-13 79.3 117 49.6
Nitab4.5_0002673g0030 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.3e-13 79.3 81 45.7
arahy.Tifrunner.gnm1.ann1.2E3RSG Arachis hypogaea HOM05D002914 ORTHO05D003196 3.1e-13 79.0 136 46.3
COL.COLO4_26446 Corchorus olitorius HOM05D002914 ORTHO05D003196 3.1e-13 79.0 66 59.1
Migut.B00310 Erythranthe guttata HOM05D002914 ORTHO05D003196 3.1e-13 79.0 78 47.4
Nitab4.5_0000876g0190 Nicotiana tabacum HOM05D002914 ORTHO05D003196 3.1e-13 79.0 105 40.0
PSO170G6047 Papaver somniferum HOM05D002914 ORTHO05D003196 3.1e-13 79.0 83 66.3
ClCG02G005720 Citrullus lanatus HOM05D002914 ORTHO05D003196 4.0e-13 78.6 115 42.6
ECA236G0292 Erigeron canadensis HOM05D002914 ORTHO05D003196 5.2e-13 78.2 85 44.7
CSS0030933 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 6.8e-13 77.8 92 64.1
CSS0032479 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 6.8e-13 77.8 92 64.1
Nitab4.5_0000876g0210 Nicotiana tabacum HOM05D002914 ORTHO05D003196 6.8e-13 77.8 81 44.4
Peaxi162Scf00016g00161 Petunia axillaris HOM05D002914 ORTHO05D003196 1.2e-12 77.0 69 58.0
Nitab4.5_0002462g0040 Nicotiana tabacum HOM05D002914 ORTHO05D003196 2.0e-12 76.3 42 76.2
Aqoxy6G00878 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 2.6e-12 75.9 108 38.9
Oeu003691.1 Olea europaea HOM05D002914 ORTHO05D003196 2.6e-12 75.9 99 43.4
Gohir.D02G212150 Gossypium hirsutum HOM05D002914 ORTHO05D003196 4.4e-12 75.1 118 47.5
Medtr3g101240 Medicago truncatula HOM05D002914 ORTHO05D003196 4.4e-12 75.1 71 54.9
Oeu013680.1 Olea europaea HOM05D002914 ORTHO05D003196 4.4e-12 75.1 107 40.2
Glyma.04G036500 Glycine max HOM05D002914 ORTHO05D003196 5.8e-12 74.7 69 55.1
Lj1g0002449 Lotus japonicus HOM05D002914 ORTHO05D003196 7.5e-12 74.3 56 58.9
Lalb_Chr23g0266911 Lupinus albus HOM05D002914 ORTHO05D003196 9.8e-12 73.9 116 41.4
CSS0043526 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 1.7e-11 73.2 40 72.5
Lalb_Chr09g0328151 Lupinus albus HOM05D002914 ORTHO05D003196 1.7e-11 73.2 42 71.4
Glyma.06G036600 Glycine max HOM05D002914 ORTHO05D003196 2.2e-11 72.8 69 56.5
TPR.G40737 Trifolium pratense HOM05D002914 ORTHO05D003196 2.2e-11 72.8 100 42.0
Manes.05G170100 Manihot esculenta HOM05D002914 ORTHO05D003196 2.9e-11 72.4 81 54.3
Psat5g044840 Pisum sativum HOM05D002914 ORTHO05D003196 3.7e-11 72.0 57 63.2
FvH4_2g35030 Fragaria vesca HOM05D002914 ORTHO05D003196 4.9e-11 71.6 63 58.7
Gorai.005G104900 Gossypium raimondii HOM05D002914 ORTHO05D003196 6.4e-11 71.2 97 34.0
Gohir.A06G015600 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-10 70.5 40 67.5
Gohir.D06G013700 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.1e-10 70.5 40 67.5
Gorai.010G016300 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.1e-10 70.5 40 67.5
HanXRQChr04g0128331 Helianthus annuus HOM05D002914 ORTHO05D003196 1.1e-10 70.5 81 40.7
Gohir.D02G092940 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.4e-10 70.1 97 34.0
PSO675G1122 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-10 70.1 43 62.8
Lj5P206T48 Lonicera japonica HOM05D002914 ORTHO05D003196 2.4e-10 69.3 116 40.5
Sp4g07710 Schrenkiella parvula HOM05D002914 ORTHO05D003196 2.4e-10 69.3 59 50.8
RcHm_v2.0_Chr6g0306971 Rosa chinensis HOM05D002914 ORTHO05D003196 3.2e-10 68.9 48 60.4
Sed0010504 Sechium edule HOM05D002914 ORTHO05D003196 3.2e-10 68.9 111 37.8
ATR0225G004 Amborella trichopoda HOM05D002914 ORTHO05D003196 4.1e-10 68.6 118 39.0
CDE02G0277 Ceratophyllum demersum HOM05D002914 ORTHO05D003196 4.1e-10 68.6 69 52.2
FAN15G3578 Fragaria x ananassa HOM05D002914 ORTHO05D003196 4.1e-10 68.6 61 50.8
HanXRQChr16g0509571 Helianthus annuus HOM05D002914 ORTHO05D003196 7.0e-10 67.8 70 48.6
Carub.0004s0669 Capsella rubella HOM05D002914 ORTHO05D003196 9.2e-10 67.4 53 52.8
FAN20G2785 Fragaria x ananassa HOM05D002914 ORTHO05D003196 9.2e-10 67.4 61 50.8
Aa31LG5G9350 Aethionema arabicum HOM05D002914 ORTHO05D003196 1.2e-09 67.0 57 52.6
AL4G19370 Arabidopsis lyrata HOM05D002914 ORTHO05D003196 1.2e-09 67.0 51 54.9
THA.LOC104803788 Tarenaya hassleriana HOM05D002914 ORTHO05D003196 1.2e-09 67.0 64 46.9
EL10Ac9g21822 Beta vulgaris HOM05D002914 ORTHO05D003196 2.0e-09 66.2 41 61.0
PGR083G2546 Punica granatum HOM05D002914 ORTHO05D003196 2.7e-09 65.9 91 39.6
Ah.01g020080 Amaranthus hybridus HOM05D002914 ORTHO05D003196 3.5e-09 65.5 40 65.0
CANSAT25G0897 Cannabis sativa HOM05D002914 ORTHO05D003196 4.6e-09 65.1 53 50.9
Oeu007255.1 Olea europaea HOM05D002914 ORTHO05D003196 4.6e-09 65.1 68 48.5
Phvul.001G135000 Phaseolus vulgaris HOM05D002914 ORTHO05D003196 4.6e-09 65.1 52 51.9
Prupe.7G063700 Prunus persica HOM05D002914 ORTHO05D003196 7.8e-09 64.3 55 49.1
AT2G26520 Arabidopsis thaliana HOM05D002914 ORTHO05D003196 1.0e-08 63.9 53 50.9
CDE01G0545 Ceratophyllum demersum HOM05D000767 ORTHO05D003196 1.0e-08 63.9 70 44.3
FAN27G2590 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.0e-08 63.9 61 47.5
Oeu003693.1 Olea europaea HOM05D002914 ORTHO05D003196 1.3e-08 63.5 98 37.8
Oeu010582.1 Olea europaea HOM05D002914 ORTHO05D003196 1.3e-08 63.5 98 37.8
Sc15g0006440 Simmondsia chinensis HOM05D002914 ORTHO05D003196 1.7e-08 63.2 38 65.8
Cpa.g.sc376.2 Carica papaya HOM05D002914 ORTHO05D003196 2.3e-08 62.8 79 40.5
TAR623G0040 Trochodendron aralioides HOM05D002914 ORTHO05D003196 3.0e-08 62.4 53 49.1
Dinv18053 Davidia involucrata HOM05D002914 ORTHO05D003196 3.9e-08 62.0 53 49.1
FvH4_6g23590 Fragaria vesca HOM05D002914 ORTHO05D003196 6.6e-08 61.2 54 50.0
Medtr7g091830 Medicago truncatula HOM05D002914 ORTHO05D003196 6.6e-08 61.2 42 59.5
Nn2g15303 Nelumbo nucifera HOM05D002914 ORTHO05D003196 6.6e-08 61.2 53 47.2
SEGI_00607 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 8.6e-08 60.8 38 60.5
Ca_08467_v3 Cicer arietinum L. HOM05D002914 ORTHO05D003196 1.1e-07 60.5 53 47.2
HPP92_003444 Vanilla planifolia HOM05D002914 ORTHO05D003196 1.1e-07 60.5 60 41.7
VMungo1383G1568 Vigna mungo HOM05D002914 ORTHO05D003196 1.5e-07 60.1 41 58.5
FAN09G0984 Fragaria x ananassa HOM05D002914 ORTHO05D003196 1.9e-07 59.7 54 48.1
Gohir.A09G123100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-07 59.7 55 47.3
Gohir.D09G120100 Gossypium hirsutum HOM05D002914 ORTHO05D003196 1.9e-07 59.7 55 47.3
Gorai.006G137500 Gossypium raimondii HOM05D002914 ORTHO05D003196 1.9e-07 59.7 55 47.3
SGA_v2.0_scaffold105G30420 Striga asiatica HOM05D002914 ORTHO05D003196 2.5e-07 59.3 53 47.2
TPR.G27766 Trifolium pratense HOM05D002914 ORTHO05D003196 2.5e-07 59.3 42 57.1
Peaxi162Scf00493g00035 Petunia axillaris HOM05D002914 ORTHO05D003196 3.3e-07 58.9 40 60.0
CSS0032433 Camellia sinensis var. sinensis HOM05D002914 ORTHO05D003196 4.3e-07 58.5 43 53.5
RcHm_v2.0_Chr3g0481701 Rosa chinensis HOM05D002914 ORTHO05D003196 4.3e-07 58.5 58 43.1
CANSAT80G1635 Cannabis sativa HOM05D002914 ORTHO05D003196 5.6e-07 58.2 38 57.9
Glyma.19G140500 Glycine max HOM05D002914 ORTHO05D003196 5.6e-07 58.2 40 57.5
Hma1.2p1_1847F.1_g305210 Hydrangea macrophylla HOM05D002914 ORTHO05D003196 7.3e-07 57.8 42 54.8
Manes.09G023600 Manihot esculenta HOM05D002914 ORTHO05D003196 7.3e-07 57.8 59 44.1
SEGI_40351 Sequoiadendron giganteum HOM05D002914 ORTHO05D003196 7.3e-07 57.8 70 44.3
EL10Ac3g07073 Beta vulgaris HOM05D002914 ORTHO05D003196 9.5e-07 57.4 38 57.9
Lalb_Chr20g0110761 Lupinus albus HOM05D002914 ORTHO05D003196 1.2e-06 57.0 40 55.0
MBI12_g22911_MAGBIO Magnolia biondii HOM05D002914 ORTHO05D003196 1.2e-06 57.0 54 53.7
Nitab4.5_0005892g0010 Nicotiana tabacum HOM05D002914 ORTHO05D003196 1.2e-06 57.0 42 54.8
Thecc.05G158000 Theobroma cacao HOM05D002914 ORTHO05D003196 1.2e-06 57.0 55 47.3
HanXRQChr04g0128351 Helianthus annuus HOM05D001803 ORTHO05D001686 1.6e-06 56.6 29 69.0
Atru.chr1.1072 Acer truncatum HOM05D002914 ORTHO05D003196 2.1e-06 56.2 57 45.6
Lj1g0015891 Lotus japonicus HOM05D002914 ORTHO05D003196 2.1e-06 56.2 57 50.9
Os03g0696150 Oryza sativa ssp. japonica HOM05D002914 ORTHO05D003196 2.1e-06 56.2 53 43.4
Duzib093G1261 Durio zibethinus HOM05D002914 ORTHO05D003196 2.8e-06 55.8 56 42.9
Lsat_1_v5_gn_5_161660 Lactuca sativa HOM05D002914 ORTHO05D003196 3.6e-06 55.5 38 52.6
HPP92_007074 Vanilla planifolia HOM05D002914 ORTHO05D003196 3.6e-06 55.5 41 53.7
Ah.05g168910 Amaranthus hybridus HOM05D002914 ORTHO05D003196 4.7e-06 55.1 39 59.0
CiPaw.09G037100 Carya illinoinensis HOM05D002914 ORTHO05D003196 4.7e-06 55.1 56 46.4
COL.COLO4_28237 Corchorus olitorius HOM05D002914 ORTHO05D003196 4.7e-06 55.1 53 43.4
Psat3g072240 Pisum sativum HOM05D002914 ORTHO05D003196 4.7e-06 55.1 40 55.0
Sopen04g007610 Solanum pennellii HOM05D002914 ORTHO05D003196 6.2e-06 54.7 47 53.2
PGSC0003DMG400027270 Solanum tuberosum HOM05D002914 ORTHO05D003196 6.2e-06 54.7 38 57.9
TWI74G1608 Tripterygium wilfordii HOM05D002914 ORTHO05D003196 6.2e-06 54.7 42 47.6
Aqoxy2G00187 Aquilegia oxysepala HOM05D002914 ORTHO05D003196 8.1e-06 54.3 59 45.8


User provided reference genes

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