Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G052400 Carya illinoinensis HOM05D003855 ORTHO05D004722 0.0e+00 2142.5 1087 100.0
Cfa005469 Carpinus fangiana HOM05D003855 ORTHO05D004722 0.0e+00 1876.7 1087 87.1
Cpa.g.sc62.29 Carica papaya HOM05D003855 ORTHO05D004722 0.0e+00 1837.0 1090 85.0
Duzib052G0714 Durio zibethinus HOM05D003855 ORTHO05D004722 0.0e+00 1823.5 1094 84.1
Gorai.012G150300 Gossypium raimondii HOM05D003855 ORTHO05D004722 0.0e+00 1820.1 1095 83.8
Gohir.D04G162300 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1819.7 1095 83.7
QL11p036227 Quercus lobata HOM05D003855 ORTHO05D004722 0.0e+00 1818.9 1117 83.1
Thecc.02G098600 Theobroma cacao HOM05D003855 ORTHO05D004722 0.0e+00 1810.4 1094 83.6
Gohir.A04G120800 Gossypium hirsutum HOM05D003855 ORTHO05D004722 0.0e+00 1809.7 1095 83.4
Dinv42141 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1803.9 1090 83.3
CSS0001000 Camellia sinensis var. sinensis HOM05D003855 ORTHO05D004722 0.0e+00 1799.3 1088 83.1
TWI79G1596 Tripterygium wilfordii HOM05D003855 ORTHO05D004722 0.0e+00 1796.9 1091 83.0
Prupe.8G122100 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1795.4 1093 83.6
Manes.10G066200 Manihot esculenta HOM05D003855 ORTHO05D004722 0.0e+00 1783.1 1090 82.8
GSVIVG01031766001 Vitis vinifera HOM05D003855 ORTHO05D004722 0.0e+00 1781.5 1105 81.7
COL.COLO4_32675 Corchorus olitorius HOM05D003855 ORTHO05D004722 0.0e+00 1777.3 1094 82.4
Ciclev10027722m.g Citrus clementina HOM05D003855 ORTHO05D004722 0.0e+00 1776.9 1090 82.2
Eucgr.G01465 Eucalyptus grandis HOM05D003855 ORTHO05D004722 0.0e+00 1766.9 1107 81.7
TAR381G1366 Trochodendron aralioides HOM05D003855 ORTHO05D004722 0.0e+00 1759.6 1089 81.4
Dinv23608 Davidia involucrata HOM05D003855 ORTHO05D004722 0.0e+00 1757.7 1088 81.4
Nn5g30224 Nelumbo nucifera HOM05D003855 ORTHO05D004722 0.0e+00 1755.3 1087 80.7
RcHm_v2.0_Chr6g0258261 Rosa chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1751.9 1091 81.3
PGR042G3302 Punica granatum HOM05D003855 ORTHO05D004722 0.0e+00 1748.4 1092 81.4
MELO3C018441.2 Cucumis melo HOM05D003855 ORTHO05D004722 0.0e+00 1748.0 1089 80.6
Potri.009G103700 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1748.0 1094 82.2
FvH4_2g06380 Fragaria vesca HOM05D003855 ORTHO05D004722 0.0e+00 1746.9 1087 81.3
CsaV3_7G008690 Cucumis sativus L. HOM05D003855 ORTHO05D004722 0.0e+00 1744.6 1089 80.3
Potri.004G142300 Populus trichocarpa HOM05D003855 ORTHO05D004722 0.0e+00 1743.8 1096 81.5
Peaxi162Scf00016g01731 Petunia axillaris HOM05D003855 ORTHO05D004722 0.0e+00 1739.2 1088 79.3
PGSC0003DMG400025820 Solanum tuberosum HOM05D003855 ORTHO05D004722 0.0e+00 1737.6 1087 79.5
SalBow6G4323 Salvia bowleyana HOM05D003855 ORTHO05D004722 0.0e+00 1737.2 1088 80.1
Solyc01g108600.3 Solanum lycopersicum HOM05D003855 ORTHO05D004722 0.0e+00 1736.1 1087 79.3
Sopen01g050820 Solanum pennellii HOM05D003855 ORTHO05D004722 0.0e+00 1735.3 1087 79.3
Sed0020763 Sechium edule HOM05D003855 ORTHO05D004722 0.0e+00 1731.5 1089 79.9
Sabra09G0079400 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1726.8 1107 80.6
FAN15G0137 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1726.1 1135 78.1
Aqoxy6G01362 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1092 79.5
FAN27G3432 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1721.8 1087 80.3
Migut.B00330 Erythranthe guttata HOM05D003855 ORTHO05D004722 0.0e+00 1719.9 1091 79.2
Nitab4.5_0001899g0100 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1717.6 1089 78.7
Ca_24336_v3 Cicer arietinum L. HOM05D003855 ORTHO05D004722 0.0e+00 1717.2 1097 79.3
FAN20G0084 Fragaria x ananassa HOM05D003855 ORTHO05D004722 0.0e+00 1713.4 1187 75.0
Oeu007277.1 Olea europaea HOM05D003855 ORTHO05D004722 0.0e+00 1713.0 1092 79.0
MBI06_g04502_MAGBIO Magnolia biondii HOM05D003855 ORTHO05D004722 0.0e+00 1707.6 1093 79.4
MSTRG.16753 Avicennia marina HOM05D003855 ORTHO05D004722 0.0e+00 1706.4 1088 78.9
Glyma.01G244900 Glycine max HOM05D003855 ORTHO05D004722 0.0e+00 1701.4 1125 77.2
VMungo1215G1975 Vigna mungo HOM05D003855 ORTHO05D004722 0.0e+00 1700.3 1093 78.2
ECA234G3461 Erigeron canadensis HOM05D003855 ORTHO05D004722 0.0e+00 1699.1 1089 78.5
Sabra04G0094100 Salix brachista HOM05D003855 ORTHO05D004722 0.0e+00 1698.7 1045 82.2
Phvul.002G054400 Phaseolus vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1697.2 1091 78.6
DCAR_029027 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1696.8 1101 77.7
arahy.Tifrunner.gnm1.ann1.7G1ZKD Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1696.4 1092 79.0
Lj1g0003010 Lotus japonicus HOM05D003855 ORTHO05D004722 0.0e+00 1696.0 1011 83.4
Sc08g0000010 Simmondsia chinensis HOM05D003855 ORTHO05D004722 0.0e+00 1696.0 1096 78.2
Lalb_Chr16g0376231 Lupinus albus HOM05D003855 ORTHO05D004722 0.0e+00 1693.7 1006 82.9
Medtr5g004680 Medicago truncatula HOM05D003855 ORTHO05D004722 0.0e+00 1691.8 1089 79.1
Cc02_g18640 Coffea canephora HOM05D003855 ORTHO05D004722 0.0e+00 1687.9 1087 77.6
Nitab4.5_0002097g0080 Nicotiana tabacum HOM05D003855 ORTHO05D004722 0.0e+00 1684.1 1089 77.6
Psat4g213560 Pisum sativum HOM05D003855 ORTHO05D004722 0.0e+00 1680.6 1089 78.4
HanXRQChr10g0301751 Helianthus annuus HOM05D003855 ORTHO05D004722 0.0e+00 1680.2 1089 78.1
SGA_v2.0_scaffold32G13071 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1674.4 1111 76.4
PSO675G1899 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1673.7 1091 77.9
PSO541G0814 Papaver somniferum HOM05D003855 ORTHO05D004722 0.0e+00 1667.9 1087 77.3
THA.LOC104818544 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1664.8 1086 77.8
Sp3g17240 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1663.7 1085 77.1
Carub.0001s3883 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1662.5 1083 77.3
THA.LOC104801598 Tarenaya hassleriana HOM05D003855 ORTHO05D004722 0.0e+00 1661.7 1087 77.1
ATR0100G044 Amborella trichopoda HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1089 75.9
Hund00328 Selenicereus undatus HOM05D003855 ORTHO05D004722 0.0e+00 1659.4 1090 76.7
AL3G32540 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1659.0 1086 76.9
Thhalv10019955m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1658.7 1086 76.6
vmacro02191 Vaccinium macrocarpon HOM05D003855 ORTHO05D004722 0.0e+00 1654.8 1175 72.7
AT1G49630 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1654.0 1083 77.1
AT3G19170 Arabidopsis thaliana HOM05D003855 ORTHO05D004722 0.0e+00 1652.9 1086 76.4
Carub.0003s1899 Capsella rubella HOM05D003855 ORTHO05D004722 0.0e+00 1651.3 1086 76.3
Rhsim11G0167000 Rhododendron simsii HOM05D003855 ORTHO05D004722 0.0e+00 1650.2 1204 70.9
BcaB04g19030 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1649.4 1083 76.2
Thhalv10011199m.g Eutrema salsugineum HOM05D003855 ORTHO05D004722 0.0e+00 1646.3 1084 77.3
AL1G57020 Arabidopsis lyrata HOM05D003855 ORTHO05D004722 0.0e+00 1645.9 1084 76.8
BraA01t03617Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1099 75.3
CARHR094570 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1642.5 1085 75.9
Sp1g36500 Schrenkiella parvula HOM05D003855 ORTHO05D004722 0.0e+00 1641.7 1090 76.9
BraA03t13267Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1640.9 1086 75.9
BcaC01g03642 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1640.6 1085 75.8
Lsat_1_v5_gn_5_112961 Lactuca sativa HOM05D003855 ORTHO05D004722 0.0e+00 1640.6 1083 77.2
BcaB07g33638 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1639.8 1085 76.8
A03p41100 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1639.0 1086 76.0
BolC3t17311H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1637.1 1085 75.9
C03p50190 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1085 75.9
CDE10G0143 Ceratophyllum demersum HOM05D003855 ORTHO05D004722 0.0e+00 1636.7 1087 75.7
A01p35360 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1634.8 1084 76.0
BcaC08g43166 Brassica carinata HOM05D003855 ORTHO05D004722 0.0e+00 1631.3 1083 76.5
BraA06t23565Z Brassica rapa HOM05D003855 ORTHO05D004722 0.0e+00 1626.7 1083 76.5
C01p44870 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1626.3 1100 75.0
BolC6t35586H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1624.8 1089 76.0
Ah.01g020190 Amaranthus hybridus HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1114 74.3
A06p03570 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1624.4 1088 76.1
C06p04590 Brassica napus HOM05D003855 ORTHO05D004722 0.0e+00 1622.8 1088 75.9
Aa31LG8G5960 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1619.0 1093 75.0
Zm00001eb255690 Zea mays HOM05D003855 ORTHO05D004722 0.0e+00 1611.3 1093 74.5
BolC1t04455H Brassica oleracea HOM05D003855 ORTHO05D004722 0.0e+00 1607.0 1150 71.9
Aa31LG10G4390 Aethionema arabicum HOM05D003855 ORTHO05D004722 0.0e+00 1599.7 1029 77.6
EL10Ac9g21832 Beta vulgaris HOM05D003855 ORTHO05D004722 0.0e+00 1598.9 1090 75.3
AUR62011441 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1595.1 1118 73.4
ClCG02G005810 Citrullus lanatus HOM05D003855 ORTHO05D004722 0.0e+00 1577.0 1119 73.2
DCAR_001621 Daucus carota HOM05D003855 ORTHO05D004722 0.0e+00 1553.9 1068 73.9
AUR62016621 Chenopodium quinoa HOM05D003855 ORTHO05D004722 0.0e+00 1529.2 969 78.0
TPR.G21611 Trifolium pratense HOM05D003855 ORTHO05D004722 0.0e+00 1528.1 914 82.5
MD10G1092200 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1527.3 1099 74.3
Haze_01847 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1505.0 1107 72.6
Haze_01842 Corylus avellana HOM05D003855 ORTHO05D004722 0.0e+00 1503.8 1107 72.6
Lj5A208T47 Lonicera japonica HOM05D003855 ORTHO05D004722 0.0e+00 1493.4 869 84.5
SGA_v2.0_scaffold90G27671 Striga asiatica HOM05D003855 ORTHO05D004722 0.0e+00 1473.0 1016 73.4
Pp3c5_3160 Physcomitrium patens HOM05D003855 ORTHO05D004722 0.0e+00 1444.9 1061 67.8
Mapoly0138s0034 Marchantia polymorpha HOM05D003855 ORTHO05D004722 0.0e+00 1434.5 1018 68.5
SMO169G0211 Selaginella moellendorffii HOM05D003855 ORTHO05D004722 0.0e+00 1367.8 957 69.9
arahy.Tifrunner.gnm1.ann1.920WM2 Arachis hypogaea HOM05D003855 ORTHO05D004722 0.0e+00 1353.2 801 83.3
CBR_g17894 Chara braunii HOM05D003855 ORTHO05D004722 0.0e+00 1303.5 1005 64.8
Prupe.8G122200 Prunus persica HOM05D003855 ORTHO05D004722 0.0e+00 1259.2 1077 61.9
MD11G1150900 Malus domestica HOM05D003855 ORTHO05D004722 0.0e+00 1231.9 757 82.8
CAN.G1041.7 Capsicum annuum HOM05D003855 ORTHO05D004722 0.0e+00 1211.1 748 79.9
HPP92_005967 Vanilla planifolia HOM05D003855 ORTHO05D004722 0.0e+00 1203.3 842 73.3
CARHR039670 Cardamine hirsuta HOM05D003855 ORTHO05D004722 0.0e+00 1139.8 722 78.4
Cre01.g020918 Chlamydomonas reinhardtii HOM05D003855 ORTHO05D004722 0.0e+00 1125.2 1052 54.7
MCO05G354 Micromonas commoda HOM05D003855 ORTHO05D004722 0.0e+00 1105.9 968 55.3
PRCOL_00004407 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 0.0e+00 1100.1 997 56.2
DCAR_001622 Daucus carota HOM05D003855 ORTHO05D004722 2.2e-306 1055.8 739 72.0
MD05G1078000 Malus domestica HOM05D003855 ORTHO05D004722 4.5e-299 1031.6 881 61.5
unitig_21.g20751 Utricularia gibba HOM05D003855 ORTHO05D004722 3.9e-279 965.3 836 61.0
Mapoly0813s0001 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.5e-270 936.8 777 60.4
SHI05876 Sapria himalayana HOM05D003855 ORTHO05D004722 3.8e-266 922.2 580 76.9
Actinidia00451 Actinidia chinensis HOM05D003855 ORTHO05D004722 8.2e-261 904.4 596 76.8
CBR_g29853 Chara braunii HOM05D003855 ORTHO05D004722 1.4e-244 850.5 990 45.1
Mapoly0138s0037 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.1e-217 761.1 671 58.0
Actinidia00452 Actinidia chinensis HOM05D003855 ORTHO05D004722 3.3e-209 733.0 456 81.6
ECA238G1787 Erigeron canadensis HOM05D003855 ORTHO05D004722 1.2e-206 724.5 642 60.3
HanXRQChr07g0196921 Helianthus annuus HOM05D003855 ORTHO05D004722 2.2e-205 720.3 694 55.3
Atru.chr5.2746 Acer truncatum HOM05D003855 ORTHO05D004722 1.5e-190 671.0 420 80.2
Ciclev10029929m.g Citrus clementina HOM05D003855 ORTHO05D004722 8.1e-184 648.7 509 68.6
Actinidia12962 Actinidia chinensis HOM05D003855 ORTHO05D004722 4.3e-177 626.3 532 64.5
SEGI_28735 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 7.6e-174 615.5 408 74.8
Ciclev10030315m.g Citrus clementina HOM05D003855 ORTHO05D004722 2.4e-167 594.0 483 67.3
Atru.chr5.2745 Acer truncatum HOM05D003855 ORTHO05D004722 7.2e-164 582.4 347 86.7
SHI03491 Sapria himalayana HOM05D000105 ORTHO05D004722 4.6e-163 579.7 1030 37.8
Lsat_1_v5_gn_2_29981 Lactuca sativa HOM05D003855 ORTHO05D004722 5.3e-151 539.7 393 66.7
SHI05877 Sapria himalayana HOM05D003855 ORTHO05D004722 6.3e-136 489.6 393 65.4
CAN.G1041.6 Capsicum annuum HOM05D003855 ORTHO05D004722 2.2e-133 481.1 413 62.2
SEGI_28882 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 1.1e-124 452.2 329 66.9
HPP92_005974 Vanilla planifolia HOM05D003855 ORTHO05D004722 2.5e-124 451.1 309 72.2
MCO14G172 Micromonas commoda HOM05D003855 ORTHO05D004722 1.9e-108 398.3 995 30.5
FAN24G2426 Fragaria x ananassa HOM05D003855 ORTHO05D004722 6.2e-107 393.3 289 73.0
Cfa026983 Carpinus fangiana HOM05D003855 ORTHO05D004722 1.9e-103 381.7 958 28.8
PRCOL_00005085 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 6.0e-102 376.7 948 29.5
Atru.chr5.2744 Acer truncatum HOM05D003855 ORTHO05D004722 8.6e-101 372.9 227 81.5
PRCOL_00005679 Prasinoderma coloniale HOM05D003855 ORTHO05D004722 2.4e-90 338.2 888 29.2
SEGI_22772 Sequoiadendron giganteum HOM05D003855 ORTHO05D004722 6.4e-80 303.5 154 89.6
CBR_g30953 Chara braunii HOM05D003855 ORTHO05D004722 7.4e-60 236.9 867 24.6
MD05G1078600 Malus domestica HOM05D003855 ORTHO05D004722 1.4e-58 232.6 222 55.9
MD05G1077700 Malus domestica HOM05D003855 ORTHO05D004722 3.9e-53 214.5 310 43.9
Aqoxy7G03045 Aquilegia oxysepala HOM05D003855 ORTHO05D004722 6.3e-51 207.2 335 36.4
MD05G1078400 Malus domestica HOM05D003855 ORTHO05D246709 1.8e-45 189.1 220 54.5
Mapoly0138s0035 Marchantia polymorpha HOM05D003855 ORTHO05D004722 1.7e-43 182.6 154 60.4
Os02g0761400 Oryza sativa ssp. japonica HOM05D003855 ORTHO05D004722 2.2e-43 182.2 124 75.0
MD05G1078300 Malus domestica HOM05D003855 ORTHO05D249195 3.1e-42 178.3 273 40.3
MD05G1077600 Malus domestica HOM05D003855 ORTHO05D004722 1.5e-41 176.0 152 58.6
SHI03495 Sapria himalayana HOM05D000119 ORTHO05D000054 4.5e-41 174.5 154 60.4
COL.COLO4_14247 Corchorus olitorius HOM05D003855 ORTHO05D004722 1.0e-37 163.3 125 67.2
CBR_g46009 Chara braunii HOM05D003248 ORTHO05D000301 9.7e-36 156.8 461 27.8
Sc23g0007040 Simmondsia chinensis HOM05D003855 ORTHO05D004722 6.3e-35 154.1 149 54.4
CBR_g30954 Chara braunii HOM05D003855 ORTHO05D004722 3.8e-32 144.8 162 43.2
Lj5A208T46 Lonicera japonica HOM05D003855 ORTHO05D004722 6.1e-30 137.5 162 54.9
CBR_g53546 Chara braunii HOM05D003855 ORTHO05D000497 2.6e-28 132.1 431 27.1
SHI06221 Sapria himalayana HOM05D003855 ORTHO05D000001 8.5e-24 117.1 111 54.1
MD05G1077900 Malus domestica HOM05D003855 ORTHO05D004722 2.5e-23 115.5 81 65.4
Actinidia12961 Actinidia chinensis HOM05D003855 ORTHO05D004722 2.8e-14 85.5 83 55.4
AUR62024613 Chenopodium quinoa HOM05D025040 ORTHO05D138236 3.0e-13 82.0 56 67.9
MD07G1090800 Malus domestica HOM05D003855 ORTHO05D247201 3.0e-13 82.0 55 65.5
VMungo1309G1152 Vigna mungo HOM05D003855 ORTHO05D000575 4.9e-11 74.7 51 68.6
Lsat_1_v5_gn_9_77040 Lactuca sativa HOM05D003409 ORTHO05D004015 7.0e-10 70.9 45 73.3
Lsat_1_v5_gn_1_14301 Lactuca sativa HOM05D003855 ORTHO05D004560 6.6e-08 64.3 36 80.6
MD05G1078700 Malus domestica HOM05D003855 ORTHO05D004722 1.9e-07 62.8 77 45.5
Psat1g111840 Pisum sativum HOM05D001198 ORTHO05D001599 3.3e-07 62.0 153 37.9


User provided reference genes

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