Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G051500 Carya illinoinensis HOM05D007992 ORTHO05D010086 9.5e-32 139.4 64 100.0
arahy.Tifrunner.gnm1.ann1.5LAZ71 Arachis hypogaea HOM05D007992 ORTHO05D010086 9.8e-29 129.4 64 89.1
arahy.Tifrunner.gnm1.ann1.UKT1PL Arachis hypogaea HOM05D007992 ORTHO05D010086 9.8e-29 129.4 64 89.1
QL02p099856 Quercus lobata HOM05D007992 ORTHO05D010086 2.2e-28 128.3 63 90.5
QL93p0310_0002 Quercus lobata HOM05D007992 ORTHO05D010086 2.2e-28 128.3 63 90.5
Eucgr.I02752 Eucalyptus grandis HOM05D007992 ORTHO05D010086 1.1e-27 125.9 63 88.9
Lj4g0012187 Lotus japonicus HOM05D007992 ORTHO05D010086 1.4e-27 125.6 64 87.5
Potri.003G009800 Populus trichocarpa HOM05D007992 ORTHO05D010086 1.6e-26 122.1 64 87.5
GSVIVG01023280001 Vitis vinifera HOM05D007992 ORTHO05D010086 5.9e-26 120.2 64 82.8
Glyma.17G000900 Glycine max HOM05D007992 ORTHO05D010086 7.7e-26 119.8 63 84.1
Sed0016814 Sechium edule HOM05D007992 ORTHO05D010086 7.7e-26 119.8 63 82.5
PGR142G0328 Punica granatum HOM05D007992 ORTHO05D010086 1.0e-25 119.4 64 81.2
Manes.10G120300 Manihot esculenta HOM05D007992 ORTHO05D010086 1.3e-25 119.0 64 82.8
CsaV3_3G019300 Cucumis sativus L. HOM05D007992 ORTHO05D010086 1.7e-25 118.6 64 82.8
Phvul.003G074700 Phaseolus vulgaris HOM05D007992 ORTHO05D010086 1.7e-25 118.6 63 82.5
Cc02_g22280 Coffea canephora HOM05D007992 ORTHO05D010086 2.3e-25 118.2 64 82.8
MELO3C031671.2 Cucumis melo HOM05D007992 ORTHO05D010086 2.3e-25 118.2 64 82.8
TWI59G0747 Tripterygium wilfordii HOM05D007992 ORTHO05D010086 8.6e-25 116.3 64 82.8
MD15G1432800 Malus domestica HOM05D007992 ORTHO05D010086 1.1e-24 115.9 62 83.9
Migut.B00791 Erythranthe guttata HOM05D007992 ORTHO05D010086 1.9e-24 115.2 64 78.1
THA.LOC104820254 Tarenaya hassleriana HOM05D007992 ORTHO05D010086 1.9e-24 115.2 64 79.7
Oeu045939.1 Olea europaea HOM05D007992 ORTHO05D010086 2.5e-24 114.8 64 78.1
Medtr4g134900 Medicago truncatula HOM05D007992 ORTHO05D010086 4.3e-24 114.0 63 79.4
Nitab4.5_0000948g0130 Nicotiana tabacum HOM05D007992 ORTHO05D010086 7.3e-24 113.2 63 79.4
C05p07870 Brassica napus HOM05D007992 ORTHO05D010086 1.6e-23 112.1 64 79.7
BolC5t29538H Brassica oleracea HOM05D007992 ORTHO05D010086 1.6e-23 112.1 64 79.7
CSS0028556 Camellia sinensis var. sinensis HOM05D007992 ORTHO05D010086 1.6e-23 112.1 64 81.2
CAN.G798.45 Capsicum annuum HOM05D007992 ORTHO05D010086 1.6e-23 112.1 63 77.8
Nitab4.5_0002596g0010 Nicotiana tabacum HOM05D007992 ORTHO05D010086 2.1e-23 111.7 63 77.8
Peaxi162Scf00011g00937 Petunia axillaris HOM05D007992 ORTHO05D010086 2.1e-23 111.7 63 77.8
A06p06460 Brassica napus HOM05D007992 ORTHO05D010086 3.6e-23 110.9 64 78.1
BraA06t23857Z Brassica rapa HOM05D007992 ORTHO05D010086 3.6e-23 110.9 64 78.1
Thhalv10009288m.g Eutrema salsugineum HOM05D007992 ORTHO05D010086 4.7e-23 110.5 64 76.6
HanXRQChr07g0187511 Helianthus annuus HOM05D007992 ORTHO05D010086 4.7e-23 110.5 64 76.6
AT1G09794 Arabidopsis thaliana HOM05D007992 ORTHO05D010086 1.0e-22 109.4 64 75.0
Carub.0001s0914 Capsella rubella HOM05D007992 ORTHO05D010086 1.0e-22 109.4 64 75.0
CARHR009770 Cardamine hirsuta HOM05D007992 ORTHO05D010086 1.0e-22 109.4 64 75.0
Lsat_1_v5_gn_7_79260 Lactuca sativa HOM05D007992 ORTHO05D010086 1.0e-22 109.4 64 76.6
PSO782G2589 Papaver somniferum HOM05D007992 ORTHO05D010086 1.0e-22 109.4 59 84.7
RcHm_v2.0_Chr7g0220841 Rosa chinensis HOM05D007992 ORTHO05D010086 1.0e-22 109.4 58 82.8
Prupe.1G576700 Prunus persica HOM05D007992 ORTHO05D010086 1.4e-22 109.0 62 80.6
SalBow7G0224 Salvia bowleyana HOM05D007992 ORTHO05D010086 8.9e-22 106.3 72 69.4
vmacro01727 Vaccinium macrocarpon HOM05D007992 ORTHO05D010086 8.9e-22 106.3 74 70.3
Aa31LG1G5180 Aethionema arabicum HOM05D007992 ORTHO05D010086 1.2e-21 105.9 64 75.0
Zm00001eb138500 Zea mays HOM05D007992 ORTHO05D010086 1.2e-21 105.9 64 73.4
FAN18G3190 Fragaria x ananassa HOM05D007992 ORTHO05D010086 3.4e-21 104.4 58 79.3
DCAR_025353 Daucus carota HOM05D007992 ORTHO05D010086 4.4e-21 104.0 56 76.8
Nn5g27747 Nelumbo nucifera HOM05D007992 ORTHO05D010086 4.4e-21 104.0 60 83.3
FAN04G0058 Fragaria x ananassa HOM05D007992 ORTHO05D010086 7.5e-21 103.2 58 79.3
EL10Ac1g00780 Beta vulgaris HOM05D007992 ORTHO05D010086 1.7e-20 102.1 60 75.0
AUR62023424 Chenopodium quinoa HOM05D007992 ORTHO05D010086 1.7e-20 102.1 60 73.3
Os12g0182600 Oryza sativa ssp. japonica HOM05D007992 ORTHO05D010086 2.2e-20 101.7 64 70.3
CANSAT54G2040 Cannabis sativa HOM05D007992 ORTHO05D010086 2.9e-20 101.3 62 72.6
AagrBONN_evm.TU.Sc2ySwM_228.5013 Anthoceros agrestis HOM05D007992 ORTHO05D010086 2.0e-18 95.1 55 74.5
Aqoxy6G00119 Aquilegia oxysepala HOM05D007992 ORTHO05D010086 3.0e-17 91.3 62 72.6
Pp3c6_8240 Physcomitrium patens HOM05D007992 ORTHO05D010086 3.3e-16 87.8 58 67.2
Lalb_Chr13g0304491 Lupinus albus HOM05D007992 ORTHO05D010086 1.2e-15 85.9 63 65.1
Actinidia26161 Actinidia chinensis HOM05D000243 ORTHO05D010086 2.8e-15 84.7 45 82.2
MBI09_g08443_MAGBIO Magnolia biondii HOM05D007992 ORTHO05D010086 1.4e-14 82.4 63 65.1
Sp1g08390 Schrenkiella parvula HOM05D007992 ORTHO05D010086 1.4e-14 82.4 64 62.5
MD08G1240200 Malus domestica HOM05D007992 ORTHO05D010086 8.9e-14 79.7 59 64.4
CBR_g44919 Chara braunii HOM05D007992 ORTHO05D010086 9.8e-13 76.3 56 55.4
Atru.chr6.758 Acer truncatum HOM05D007992 ORTHO05D010086 1.7e-12 75.5 64 60.9
SMO367G0246 Selaginella moellendorffii HOM05D007992 ORTHO05D010086 1.7e-12 75.5 60 51.7
Gohir.D04G175400 Gossypium hirsutum HOM05D007992 ORTHO05D010086 3.7e-12 74.3 64 59.4
Gorai.012G166700 Gossypium raimondii HOM05D007992 ORTHO05D010086 3.7e-12 74.3 64 59.4
Thecc.02G025300 Theobroma cacao HOM05D007992 ORTHO05D010086 4.9e-12 73.9 64 59.4
Duzib132G0994 Durio zibethinus HOM05D007992 ORTHO05D010086 6.4e-12 73.6 64 59.4
Sabra03G0005100 Salix brachista HOM05D007992 ORTHO05D010086 6.4e-12 73.6 36 94.4
Gohir.A04G130200 Gossypium hirsutum HOM05D007992 ORTHO05D010086 4.1e-11 70.9 64 56.2
TPR.G6015 Trifolium pratense HOM05D005420 ORTHO05D006524 4.6e-10 67.4 57 56.1
CDE02G3423 Ceratophyllum demersum HOM05D007992 ORTHO05D010086 1.7e-09 65.5 37 78.4
Rhsim11G0125500 Rhododendron simsii HOM05D007992 ORTHO05D010086 6.6e-09 63.5 32 87.5
unitig_26.g9026 Utricularia gibba HOM05D007992 ORTHO05D010086 4.3e-08 60.8 29 86.2
PGSC0003DMG400024927 Solanum tuberosum HOM05D007992 ORTHO05D010086 3.6e-07 57.8 29 82.8
TPR.G17560 Trifolium pratense HOM05D007992 ORTHO05D010086 3.6e-07 57.8 29 82.8
SGA_v2.0_scaffold272G46362 Striga asiatica HOM05D007992 ORTHO05D010086 8.1e-07 56.6 29 79.3
Migut.B00795 Erythranthe guttata HOM05D007992 ORTHO05D010086 1.1e-06 56.2 29 75.9


User provided reference genes

Program Settings