Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G049400 Carya illinoinensis HOM05D003020 ORTHO05D003226 6.5e-146 520.8 275 100.0
Haze_22098 Corylus avellana HOM05D003020 ORTHO05D003226 1.7e-82 310.1 279 65.2
CiPaw.07G192300 Carya illinoinensis HOM05D003020 ORTHO05D003226 2.6e-78 296.2 275 61.8
Cfa013505 Carpinus fangiana HOM05D003020 ORTHO05D003226 5.8e-78 295.0 280 61.8
CiPaw.08G036400 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.2e-67 260.8 248 60.9
QL02p097728 Quercus lobata HOM05D003020 ORTHO05D003226 4.8e-56 222.2 285 51.6
Prupe.1G086100 Prunus persica HOM05D003020 ORTHO05D003226 1.4e-55 220.7 271 50.9
FvH4_4g08220 Fragaria vesca HOM05D003020 ORTHO05D003226 4.2e-52 209.1 252 52.4
FAN12G0399 Fragaria x ananassa HOM05D003020 ORTHO05D003226 9.3e-52 208.0 252 52.4
RcHm_v2.0_Chr4g0402471 Rosa chinensis HOM05D003020 ORTHO05D003226 1.3e-50 204.1 254 52.4
FAN07G1960 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-50 203.4 254 51.2
FAN17G2997 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.3e-50 203.4 272 49.6
FAN22G0428 Fragaria x ananassa HOM05D003020 ORTHO05D003226 3.9e-50 202.6 254 51.6
Cpa.g.sc95.49 Carica papaya HOM05D003020 ORTHO05D003226 3.3e-49 199.5 254 50.4
MD13G1253900 Malus domestica HOM05D003020 ORTHO05D003226 3.7e-48 196.1 248 50.0
CANSAT11G1249 Cannabis sativa HOM05D003020 ORTHO05D003226 1.5e-46 190.7 282 48.9
Ca_21174_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 2.0e-46 190.3 247 48.2
Ca_21223_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 2.0e-46 190.3 247 48.2
Thecc.09G173200 Theobroma cacao HOM05D003020 ORTHO05D003226 2.6e-46 189.9 277 47.3
COL.COLO4_35897 Corchorus olitorius HOM05D003020 ORTHO05D003226 5.8e-46 188.7 266 50.0
MD16G1257900 Malus domestica HOM05D003020 ORTHO05D003226 7.1e-44 181.8 263 46.4
Potri.018G092800 Populus trichocarpa HOM05D003020 ORTHO05D003226 1.2e-43 181.0 252 51.6
Manes.14G153300 Manihot esculenta HOM05D003020 ORTHO05D003226 6.0e-43 178.7 275 42.5
Duzib168G2116 Durio zibethinus HOM05D003020 ORTHO05D003226 2.3e-42 176.8 278 45.3
Potri.006G168400 Populus trichocarpa HOM05D003020 ORTHO05D003226 3.0e-42 176.4 249 49.4
Duzib150G1089 Durio zibethinus HOM05D003020 ORTHO05D003226 1.1e-41 174.5 251 48.6
Medtr4g128160 Medicago truncatula HOM05D003020 ORTHO05D003226 1.9e-41 173.7 271 43.9
Ciclev10010819m.g Citrus clementina HOM05D003020 ORTHO05D003226 2.5e-41 173.3 268 45.5
ClCG06G013330 Citrullus lanatus HOM05D003020 ORTHO05D003226 5.7e-41 172.2 244 48.0
Gohir.D08G094000 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.3e-40 171.0 277 43.0
Sabra18G0080000 Salix brachista HOM05D003020 ORTHO05D003226 2.1e-40 170.2 222 53.2
MELO3C017464.2 Cucumis melo HOM05D003020 ORTHO05D003226 3.7e-40 169.5 244 46.7
TAR625G0330 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.7e-40 169.5 255 48.2
Psat0s2889g0080 Pisum sativum HOM05D003020 ORTHO05D003226 8.2e-40 168.3 256 47.7
Manes.14G153400 Manihot esculenta HOM05D003020 ORTHO05D003226 1.8e-39 167.2 250 45.2
CsaV3_1G031590 Cucumis sativus L. HOM05D003020 ORTHO05D003226 2.4e-39 166.8 265 43.4
Lalb_Chr12g0199391 Lupinus albus HOM05D003020 ORTHO05D003226 3.1e-39 166.4 272 41.9
Glyma.20G083700 Glycine max HOM05D003020 ORTHO05D003226 6.9e-39 165.2 255 45.9
Gohir.A08G084400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 6.9e-39 165.2 277 41.9
Manes.14G153500 Manihot esculenta HOM05D003020 ORTHO05D003226 6.9e-39 165.2 252 46.0
Eucgr.C00156 Eucalyptus grandis HOM05D003020 ORTHO05D003226 1.5e-38 164.1 270 42.6
Glyma.17G063300 Glycine max HOM05D003020 ORTHO05D003226 2.6e-38 163.3 270 44.4
Oeu042166.1 Olea europaea HOM05D003020 ORTHO05D003226 1.7e-37 160.6 246 46.3
VMungo1215G0012 Vigna mungo HOM05D003020 ORTHO05D003226 6.5e-37 158.7 277 42.2
Duzib170G0355 Durio zibethinus HOM05D003020 ORTHO05D003226 8.4e-37 158.3 248 44.4
Lj4g0004544 Lotus japonicus HOM05D003020 ORTHO05D003226 1.4e-36 157.5 255 43.9
Gorai.004G031500 Gossypium raimondii HOM05D003020 ORTHO05D003226 9.3e-36 154.8 275 42.5
Sed0018084 Sechium edule HOM05D003020 ORTHO05D003226 1.2e-35 154.5 244 43.4
Dinv41250 Davidia involucrata HOM05D003020 ORTHO05D003226 1.6e-35 154.1 225 47.1
TPR.G5404 Trifolium pratense HOM05D003020 ORTHO05D003226 7.9e-35 151.8 276 40.9
Atru.chr7.633 Acer truncatum HOM05D003020 ORTHO05D003226 1.0e-34 151.4 251 41.4
Hma1.2p1_1025F.1_g249270 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 1.3e-34 151.0 266 44.0
TAR383G0645 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.3e-34 151.0 257 43.6
PGR102G0964 Punica granatum HOM05D003020 ORTHO05D003226 3.0e-34 149.8 294 41.2
TAR383G0698 Trochodendron aralioides HOM05D003020 ORTHO05D003226 3.0e-34 149.8 253 41.9
Gohir.D08G033900 Gossypium hirsutum HOM05D003020 ORTHO05D003226 1.5e-33 147.5 275 41.8
TAR636G2901 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.5e-33 147.5 262 43.9
Oeu004196.1 Olea europaea HOM05D003020 ORTHO05D003226 1.3e-32 144.4 246 45.9
TAR383G0860 Trochodendron aralioides HOM05D003020 ORTHO05D003226 1.3e-32 144.4 262 44.7
Gohir.A08G023400 Gossypium hirsutum HOM05D003020 ORTHO05D003226 4.8e-32 142.5 277 40.4
Sabra06G0129900 Salix brachista HOM05D003020 ORTHO05D003226 4.8e-32 142.5 201 51.2
Phvul.003G146000 Phaseolus vulgaris HOM05D003020 ORTHO05D003226 8.2e-32 141.7 255 42.7
Thhalv10026023m.g Eutrema salsugineum HOM05D003020 ORTHO05D003226 1.1e-31 141.4 287 42.2
Sed0024933 Sechium edule HOM05D003020 ORTHO05D003226 1.4e-31 141.0 227 45.8
TWI63G1498 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 1.3e-29 134.4 249 42.2
Lj9P685T21 Lonicera japonica HOM05D003020 ORTHO05D003226 1.1e-28 131.3 223 40.8
Eucgr.C02308 Eucalyptus grandis HOM05D003020 ORTHO05D003226 5.5e-28 129.0 222 38.7
Lalb_Chr07g0180461 Lupinus albus HOM05D003020 ORTHO05D003226 5.5e-28 129.0 248 40.3
Sp7g28110 Schrenkiella parvula HOM05D003020 ORTHO05D003226 5.5e-28 129.0 263 41.8
Actinidia04141 Actinidia chinensis HOM05D003020 ORTHO05D003226 7.2e-28 128.6 254 43.3
THA.LOC104803497 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 7.2e-28 128.6 263 39.2
DCAR_014702 Daucus carota HOM05D003020 ORTHO05D003226 2.1e-27 127.1 249 41.0
TWI34G0269 Tripterygium wilfordii HOM05D003020 ORTHO05D003226 2.1e-27 127.1 275 41.8
TAR626G0085 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.6e-27 125.9 261 39.5
Gorai.004G099800 Gossypium raimondii HOM05D003020 ORTHO05D003226 1.1e-25 121.3 168 50.6
Dinv42724 Davidia involucrata HOM05D003020 ORTHO05D003226 1.5e-25 120.9 268 39.6
Dinv43377 Davidia involucrata HOM05D003020 ORTHO05D003226 1.5e-25 120.9 268 39.6
DCAR_017969 Daucus carota HOM05D003020 ORTHO05D003226 2.0e-25 120.6 231 39.4
AL7G21920 Arabidopsis lyrata HOM05D003020 ORTHO05D003226 3.3e-25 119.8 283 37.1
AT4G30230 Arabidopsis thaliana HOM05D003020 ORTHO05D003226 4.3e-25 119.4 279 38.4
Nn2g12774 Nelumbo nucifera HOM05D003020 ORTHO05D003226 4.3e-25 119.4 255 38.4
TAR626G1849 Trochodendron aralioides HOM05D003020 ORTHO05D003226 4.3e-25 119.4 262 38.5
CARHR238140 Cardamine hirsuta HOM05D003020 ORTHO05D003226 1.3e-24 117.9 258 34.9
Lj9C24T7 Lonicera japonica HOM05D003020 ORTHO05D003226 1.7e-24 117.5 219 39.7
Rhsim01G0004800 Rhododendron simsii HOM05D003020 ORTHO05D003226 2.8e-24 116.7 260 37.7
THA.LOC104819978 Tarenaya hassleriana HOM05D003020 ORTHO05D003226 4.8e-24 115.9 247 39.7
MSTRG.6214 Avicennia marina HOM05D003020 ORTHO05D003226 8.2e-24 115.2 210 44.8
Carub.0007s1038 Capsella rubella HOM05D003020 ORTHO05D003226 1.4e-23 114.4 253 37.9
Ciclev10010534m.g Citrus clementina HOM05D003020 ORTHO05D003226 1.8e-23 114.0 258 38.4
BcaNung03008 Brassica carinata HOM05D003020 ORTHO05D003226 2.4e-23 113.6 257 37.0
A01p07910 Brassica napus HOM05D003020 ORTHO05D003226 2.4e-23 113.6 220 37.7
BraA01t00737Z Brassica rapa HOM05D003020 ORTHO05D003226 2.4e-23 113.6 220 37.7
ECA240G3460 Erigeron canadensis HOM05D003020 ORTHO05D003226 2.4e-23 113.6 241 39.4
Lsat_1_v5_gn_7_54521 Lactuca sativa HOM05D003020 ORTHO05D003226 4.1e-23 112.8 220 42.7
Oeu025224.1 Olea europaea HOM05D003020 ORTHO05D003226 5.3e-23 112.5 249 37.8
TAR383G0288 Trochodendron aralioides HOM05D003020 ORTHO05D003226 6.9e-23 112.1 259 36.7
Lj9A26T13 Lonicera japonica HOM05D003020 ORTHO05D003226 2.0e-22 110.5 219 39.3
Aa31LG2G20290 Aethionema arabicum HOM05D003020 ORTHO05D003226 3.4e-22 109.8 246 37.4
BcaC09g51805 Brassica carinata HOM05D003020 ORTHO05D003226 7.7e-22 108.6 257 35.0
C01p08830 Brassica napus HOM05D003020 ORTHO05D003226 7.7e-22 108.6 257 35.0
BolC1t00873H Brassica oleracea HOM05D003020 ORTHO05D003226 7.7e-22 108.6 257 35.0
A03p59690 Brassica napus HOM05D003020 ORTHO05D003226 1.7e-21 107.5 276 34.1
Aqoxy7G03070 Aquilegia oxysepala HOM05D003020 ORTHO05D003226 3.8e-21 106.3 262 38.2
BraA03t15021Z Brassica rapa HOM05D003020 ORTHO05D003226 8.5e-21 105.1 276 34.8
C07p57710 Brassica napus HOM05D003020 ORTHO05D003226 1.4e-20 104.4 262 35.5
BolC7t46232H Brassica oleracea HOM05D003020 ORTHO05D003226 1.4e-20 104.4 262 35.5
Migut.J01478 Erythranthe guttata HOM05D003020 ORTHO05D003226 2.5e-20 103.6 269 39.4
MBI16_g42581_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D003226 1.2e-19 101.3 231 34.6
MBI16_g41356_MAGBIO Magnolia biondii HOM05D003020 ORTHO05D003226 1.6e-19 100.9 231 35.5
SalBow6G2220 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.6e-19 100.9 264 36.0
Lsat_1_v5_gn_5_84881 Lactuca sativa HOM05D003020 ORTHO05D003226 3.9e-18 96.3 254 35.0
HanXRQChr09g0244991 Helianthus annuus HOM05D003020 ORTHO05D003226 4.4e-17 92.8 281 33.5
MBI14_g17368_MAGBIO Magnolia biondii HOM05D000283 ORTHO05D000358 2.2e-16 90.5 228 35.1
CiPaw.07G071600 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.1e-15 88.2 262 34.4
CiPaw.02G176000 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.6e-14 84.3 262 32.8
QL08p056680 Quercus lobata HOM05D003020 ORTHO05D003226 1.6e-14 84.3 274 34.3
Dinv31353 Davidia involucrata HOM05D003020 ORTHO05D003226 4.5e-14 82.8 276 32.6
ECA234G3857 Erigeron canadensis HOM05D003020 ORTHO05D003226 1.0e-13 81.6 259 32.4
Cc02_g11380 Coffea canephora HOM05D003020 ORTHO05D003226 3.8e-13 79.7 231 31.2
Potri.010G218300 Populus trichocarpa HOM05D003020 ORTHO05D003226 6.5e-13 79.0 248 31.0
ATR0580G303 Amborella trichopoda HOM05D003020 ORTHO05D003226 1.1e-12 78.2 254 33.5
FAN10G0626 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.1e-12 78.2 265 31.7
Sabra10G0168900 Salix brachista HOM05D003020 ORTHO05D003226 3.2e-12 76.6 245 31.4
Migut.K00242 Erythranthe guttata HOM05D003020 ORTHO05D003226 5.5e-12 75.9 249 32.1
FAN06G0496 Fragaria x ananassa HOM05D003020 ORTHO05D003226 5.5e-12 75.9 265 32.5
PSO170G3450 Papaver somniferum HOM05D003020 ORTHO05D003226 7.2e-12 75.5 269 29.0
Potri.008G043300 Populus trichocarpa HOM05D003020 ORTHO05D003226 7.2e-12 75.5 254 30.7
Dinv11796 Davidia involucrata HOM05D000336 ORTHO05D002705 9.4e-12 75.1 253 31.2
Sabra08G0029900 Salix brachista HOM05D003020 ORTHO05D003226 2.1e-11 73.9 247 32.4
Haze_16927 Corylus avellana HOM05D003020 ORTHO05D003226 2.7e-11 73.6 288 30.9
FAN03G1700 Fragaria x ananassa HOM05D003020 ORTHO05D003226 4.7e-11 72.8 265 30.9
AUR62033218 Chenopodium quinoa HOM05D000002 ORTHO05D000001 6.1e-11 72.4 202 32.2
Cpa.g.sc53.28 Carica papaya HOM05D003020 ORTHO05D003226 1.0e-10 71.6 256 30.5
CiPaw.01G275700 Carya illinoinensis HOM05D003020 ORTHO05D003226 1.8e-10 70.9 241 29.9
BcaNung00532 Brassica carinata HOM05D003020 ORTHO05D003226 2.3e-10 70.5 222 33.8
Duzib106G1942 Durio zibethinus HOM05D003020 ORTHO05D003226 2.3e-10 70.5 273 31.9
Ah.09g229890 Amaranthus hybridus HOM05D003020 ORTHO05D003226 3.0e-10 70.1 157 40.1
FvH4_7g20070 Fragaria vesca HOM05D003020 ORTHO05D003226 3.0e-10 70.1 257 29.6
Hma1.2p1_0453F.1_g156030 Hydrangea macrophylla HOM05D003020 ORTHO05D003226 6.7e-10 68.9 252 30.2
Prupe.2G217400 Prunus persica HOM05D003020 ORTHO05D003226 6.7e-10 68.9 257 30.4
Cfa001601 Carpinus fangiana HOM05D003020 ORTHO05D003226 1.5e-09 67.8 284 28.5
EL10Ac8g18285 Beta vulgaris HOM05D003020 ORTHO05D003226 4.4e-09 66.2 157 38.2
Hma1.2p1_2080F.1_g313480 Hydrangea macrophylla HOM05D011460 ORTHO05D010383 1.3e-08 64.7 249 28.5
SGA_v2.0_scaffold17G07929 Striga asiatica HOM05D003020 ORTHO05D003226 1.3e-08 64.7 247 31.6
Eucgr.G02809 Eucalyptus grandis HOM05D003020 ORTHO05D003226 2.8e-08 63.5 241 29.0
AUR62021300 Chenopodium quinoa HOM05D003020 ORTHO05D003226 3.7e-08 63.2 197 30.5
Eucgr.J01120 Eucalyptus grandis HOM05D003020 ORTHO05D003226 3.7e-08 63.2 262 29.4
Dinv11798 Davidia involucrata HOM05D003020 ORTHO05D003226 4.8e-08 62.8 272 28.3
RcHm_v2.0_Chr1g0364021 Rosa chinensis HOM05D003020 ORTHO05D003226 4.8e-08 62.8 258 29.8
Manes.07G102900 Manihot esculenta HOM05D003020 ORTHO05D003226 1.4e-07 61.2 259 30.1
Thecc.10G069300 Theobroma cacao HOM05D003020 ORTHO05D003226 1.4e-07 61.2 238 31.5
SalBow4G1965 Salvia bowleyana HOM05D003020 ORTHO05D003226 1.8e-07 60.8 250 29.6
Duzib128G1476 Durio zibethinus HOM05D010162 ORTHO05D010383 3.1e-07 60.1 259 30.5
Manes.10G043600 Manihot esculenta HOM05D003020 ORTHO05D003226 4.1e-07 59.7 277 31.8
Dinv31354 Davidia involucrata HOM05D003020 ORTHO05D003226 5.3e-07 59.3 248 29.4
FvH4_7g20060 Fragaria vesca HOM05D003020 ORTHO05D003226 5.3e-07 59.3 260 30.0
Oeu041159.1 Olea europaea HOM05D003020 ORTHO05D003226 5.3e-07 59.3 96 40.6
Sabra16G0323200 Salix brachista HOM05D003020 ORTHO05D003226 9.1e-07 58.5 200 32.0
Solyc11g008750.1 Solanum lycopersicum HOM05D011460 ORTHO05D010383 9.1e-07 58.5 174 33.3
FAN06G2932 Fragaria x ananassa HOM05D003020 ORTHO05D003226 1.2e-06 58.2 260 29.6
PGR044G1634 Punica granatum HOM05D003020 ORTHO05D003226 1.6e-06 57.8 261 31.8
Sabra16G0321600 Salix brachista HOM05D003020 ORTHO05D003226 1.6e-06 57.8 200 32.0
Gohir.D06G174600 Gossypium hirsutum HOM05D003020 ORTHO05D003226 2.0e-06 57.4 243 28.0
Lj1C921T4 Lonicera japonica HOM05D003020 ORTHO05D003226 2.0e-06 57.4 224 27.7
FAN01G0050 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.7e-06 57.0 260 29.2
FAN01G2565 Fragaria x ananassa HOM05D003020 ORTHO05D003226 2.7e-06 57.0 260 29.2
Gorai.010G204300 Gossypium raimondii HOM05D003020 ORTHO05D003226 2.7e-06 57.0 243 28.4
Medtr1g095730 Medicago truncatula HOM05D003020 ORTHO05D003226 2.7e-06 57.0 203 29.6
Ca_10586_v3 Cicer arietinum L. HOM05D003020 ORTHO05D003226 3.5e-06 56.6 261 27.6
Migut.F01988 Erythranthe guttata HOM05D003020 ORTHO05D003226 3.5e-06 56.6 281 24.2
Actinidia07721 Actinidia chinensis HOM05D003020 ORTHO05D003226 4.5e-06 56.2 207 29.5


User provided reference genes

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