Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G044300 Carya illinoinensis HOM05D005880 ORTHO05D007114 8.8e-73 276.9 148 100.0
arahy.Tifrunner.gnm1.ann1.G2QNI1 Arachis hypogaea HOM05D005880 ORTHO05D007114 5.3e-54 214.5 148 76.4
Potri.006G003600 Populus trichocarpa HOM05D005880 ORTHO05D007114 2.2e-52 209.1 148 72.3
Haze_01670 Corylus avellana HOM05D005880 ORTHO05D007114 2.9e-52 208.8 148 72.3
Glyma.15G046700 Glycine max HOM05D005880 ORTHO05D007114 6.5e-52 207.6 148 73.6
VMungo0540G2478 Vigna mungo HOM05D005880 ORTHO05D007114 1.1e-51 206.8 148 73.6
Sabra16G0009100 Salix brachista HOM05D005880 ORTHO05D007114 1.5e-51 206.5 148 72.3
Duzib052G0157 Durio zibethinus HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 73.0
Duzib132G0062 Durio zibethinus HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 72.3
Thecc.02G038300 Theobroma cacao HOM05D005880 ORTHO05D007114 1.9e-51 206.1 148 73.0
Gohir.A01G000600 Gossypium hirsutum HOM05D005880 ORTHO05D007114 2.5e-51 205.7 148 71.6
MD15G1423100 Malus domestica HOM05D005880 ORTHO05D007114 2.5e-51 205.7 148 73.0
Potri.016G004300 Populus trichocarpa HOM05D005880 ORTHO05D007114 3.2e-51 205.3 148 72.3
Lj6g0008702 Lotus japonicus HOM05D005880 ORTHO05D007114 5.5e-51 204.5 148 73.0
CiPaw.06G147400 Carya illinoinensis HOM05D005880 ORTHO05D007114 9.4e-51 203.8 143 76.2
Gohir.D01G000400 Gossypium hirsutum HOM05D005880 ORTHO05D007114 9.4e-51 203.8 148 70.9
Gorai.002G001000 Gossypium raimondii HOM05D005880 ORTHO05D007114 9.4e-51 203.8 148 70.9
Medtr2g007190 Medicago truncatula HOM05D005880 ORTHO05D007114 1.6e-50 203.0 148 72.3
QL11p018494 Quercus lobata HOM05D005880 ORTHO05D007114 2.1e-50 202.6 147 71.4
Manes.10G129200 Manihot esculenta HOM05D005880 ORTHO05D007114 4.7e-50 201.4 148 70.9
COL.COLO4_17867 Corchorus olitorius HOM05D005880 ORTHO05D007114 6.1e-50 201.1 148 70.9
Manes.07G015600 Manihot esculenta HOM05D005880 ORTHO05D007114 1.0e-49 200.3 148 68.9
Phvul.006G214500 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 1.8e-49 199.5 148 70.9
FvH4_5g29530 Fragaria vesca HOM05D005880 ORTHO05D007114 2.3e-49 199.1 148 71.6
RcHm_v2.0_Chr7g0222451 Rosa chinensis HOM05D005880 ORTHO05D007114 3.0e-49 198.7 148 70.3
GSVIVG01022927001 Vitis vinifera HOM05D005880 ORTHO05D007114 8.8e-49 197.2 148 68.2
CsaV3_3G018850 Cucumis sativus L. HOM05D005880 ORTHO05D007114 3.4e-48 195.3 148 68.2
MD08G1229100 Malus domestica HOM05D005880 ORTHO05D007114 4.4e-48 194.9 148 69.6
Sabra16G0009300 Salix brachista HOM05D005880 ORTHO05D007114 4.4e-48 194.9 145 69.7
FAN18G2654 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.8e-47 191.4 144 70.8
ClCG05G009710 Citrullus lanatus HOM05D005880 ORTHO05D007114 1.1e-46 190.3 148 66.9
Cc02_g22480 Coffea canephora HOM05D005880 ORTHO05D007114 1.8e-46 189.5 150 67.3
Prupe.1G568400 Prunus persica HOM05D005880 ORTHO05D007114 3.1e-46 188.7 143 69.9
FAN04G0122 Fragaria x ananassa HOM05D005880 ORTHO05D007114 4.1e-46 188.3 144 69.4
FAN08G1303 Fragaria x ananassa HOM05D005880 ORTHO05D007114 5.4e-46 188.0 143 69.9
Cpa.g.sc113.61 Carica papaya HOM05D005880 ORTHO05D007114 9.1e-46 187.2 148 64.2
Atru.chr6.645 Acer truncatum HOM05D005880 ORTHO05D007114 1.2e-45 186.8 148 67.6
Sed0000042 Sechium edule HOM05D005880 ORTHO05D007114 1.3e-44 183.3 148 64.9
TAR376G0254 Trochodendron aralioides HOM05D005880 ORTHO05D007114 7.2e-43 177.6 150 63.3
TAR628G0071 Trochodendron aralioides HOM05D005880 ORTHO05D007114 1.2e-42 176.8 150 63.3
Ciclev10002788m.g Citrus clementina HOM05D005880 ORTHO05D007114 1.6e-42 176.4 148 63.5
PGR042G3410 Punica granatum HOM05D005880 ORTHO05D007114 3.6e-42 175.3 148 65.5
Dinv24281 Davidia involucrata HOM05D005880 ORTHO05D007114 4.7e-42 174.9 148 64.9
Aqoxy6G00184 Aquilegia oxysepala HOM05D005880 ORTHO05D007114 1.8e-41 172.9 152 61.2
Hma1.2p1_0217F.1_g092030 Hydrangea macrophylla HOM05D005880 ORTHO05D007114 1.8e-41 172.9 150 64.7
Rhsim11G0129500 Rhododendron simsii HOM05D005880 ORTHO05D007114 2.3e-41 172.6 150 62.7
TWI59G1122 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.0e-41 171.8 148 64.2
Ca_00076_v3 Cicer arietinum L. HOM05D005880 ORTHO05D007114 1.5e-40 169.9 143 65.0
CANSAT54G2878 Cannabis sativa HOM05D005880 ORTHO05D007114 2.6e-40 169.1 148 62.2
Eucgr.G00579 Eucalyptus grandis HOM05D005880 ORTHO05D007114 4.4e-40 168.3 148 58.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 1.3e-39 166.8 119 73.1
arahy.Tifrunner.gnm1.ann1.IQ7NU0 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-39 166.4 119 72.3
arahy.Tifrunner.gnm1.ann1.REH2VN Arachis hypogaea HOM05D005880 ORTHO05D007114 1.7e-39 166.4 119 72.3
arahy.Tifrunner.gnm1.ann1.JTZ9FV Arachis hypogaea HOM05D005880 ORTHO05D007114 2.2e-39 166.0 118 72.0
ECA234G2605 Erigeron canadensis HOM05D005880 ORTHO05D007114 2.2e-39 166.0 150 61.3
Ah.04g161590 Amaranthus hybridus HOM05D005880 ORTHO05D007114 2.8e-39 165.6 148 60.1
arahy.Tifrunner.gnm1.ann1.MS6DZN Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-39 165.6 121 71.9
Nn5g28217 Nelumbo nucifera HOM05D005880 ORTHO05D007114 4.9e-39 164.9 140 58.6
Lsat_1_v5_gn_5_109301 Lactuca sativa HOM05D005880 ORTHO05D007114 3.1e-38 162.2 144 60.4
Sopen01g046630 Solanum pennellii HOM05D005880 ORTHO05D007114 4.1e-38 161.8 151 57.6
Solyc01g104190.2 Solanum lycopersicum HOM05D005880 ORTHO05D007114 7.0e-38 161.0 151 58.3
PGSC0003DMG400023792 Solanum tuberosum HOM05D005880 ORTHO05D007114 1.2e-37 160.2 151 57.6
TPR.G23065 Trifolium pratense HOM05D005880 ORTHO05D007114 4.5e-37 158.3 148 61.5
Oeu045943.1 Olea europaea HOM05D005880 ORTHO05D007114 5.9e-37 157.9 132 61.4
CiPaw.04G102300 Carya illinoinensis HOM05D005880 ORTHO05D007114 7.8e-37 157.5 114 72.8
arahy.Tifrunner.gnm1.ann1.BDEX7B Arachis hypogaea HOM05D005880 ORTHO05D007114 1.0e-36 157.1 114 71.1
Nitab4.5_0010062g0030 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.3e-36 156.8 152 56.6
arahy.Tifrunner.gnm1.ann1.90JL3B Arachis hypogaea HOM05D005880 ORTHO05D007114 3.8e-36 155.2 114 71.1
Gohir.D02G233200 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-35 153.7 149 57.7
Gorai.005G261100 Gossypium raimondii HOM05D005880 ORTHO05D007114 1.1e-35 153.7 149 57.7
Migut.B00838 Erythranthe guttata HOM05D005880 ORTHO05D007114 1.5e-35 153.3 150 55.3
Gohir.A03G211800 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.5e-35 153.3 149 57.7
Lalb_Chr15g0090661 Lupinus albus HOM05D005880 ORTHO05D007114 1.9e-35 152.9 121 66.1
Nn1g08723 Nelumbo nucifera HOM05D005880 ORTHO05D007114 2.5e-35 152.5 138 57.2
TWI23G0568 Tripterygium wilfordii HOM05D005880 ORTHO05D007114 4.3e-35 151.8 148 62.8
Psat1g224760 Pisum sativum HOM05D005880 ORTHO05D007114 9.5e-35 150.6 119 66.4
Nitab4.5_0002245g0020 Nicotiana tabacum HOM05D005880 ORTHO05D007114 1.2e-34 150.2 152 55.9
AL2G15640 Arabidopsis lyrata HOM05D005880 ORTHO05D007114 2.8e-34 149.1 148 54.1
CSS0009830 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.6e-34 148.7 150 58.0
SGA_v2.0_scaffold1G00307 Striga asiatica HOM05D002729 ORTHO05D003163 4.7e-34 148.3 141 54.6
EL10Ac4g10345 Beta vulgaris HOM05D005880 ORTHO05D007114 8.0e-34 147.5 148 56.8
CAN.G1577.17 Capsicum annuum HOM05D005880 ORTHO05D007114 1.0e-33 147.1 143 54.5
Peaxi162Scf00011g00326 Petunia axillaris HOM05D005880 ORTHO05D007114 2.3e-33 146.0 155 52.9
CSS0021530 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 3.0e-33 145.6 150 56.7
FAN13G3279 Fragaria x ananassa HOM05D005880 ORTHO05D007114 1.2e-32 143.7 127 62.2
Aa31LG2G9680 Aethionema arabicum HOM05D005880 ORTHO05D007114 1.5e-32 143.3 148 51.4
AUR62000032 Chenopodium quinoa HOM05D005880 ORTHO05D007114 2.0e-32 142.9 148 55.4
DCAR_029253 Daucus carota HOM05D005880 ORTHO05D007114 2.6e-32 142.5 149 51.7
THA.LOC104819299 Tarenaya hassleriana HOM05D005880 ORTHO05D007114 5.8e-32 141.4 148 51.4
MBI06_g20717_MAGBIO Magnolia biondii HOM05D005880 ORTHO05D007114 7.5e-32 141.0 141 51.8
CSS0048748 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.3e-31 140.2 138 58.7
Gohir.A08G134100 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.3e-31 140.2 144 54.9
BcaC04g22278 Brassica carinata HOM05D005880 ORTHO05D007114 3.7e-31 138.7 148 50.0
C09p21370 Brassica napus HOM05D005880 ORTHO05D007114 3.7e-31 138.7 148 50.0
BolC9t55037H Brassica oleracea HOM05D005880 ORTHO05D007114 3.7e-31 138.7 148 50.0
AT1G60870 Arabidopsis thaliana HOM05D005880 ORTHO05D007114 4.9e-31 138.3 148 51.4
Thhalv10023746m.g Eutrema salsugineum HOM05D005880 ORTHO05D007114 6.4e-31 137.9 148 50.0
BcaB07g31236 Brassica carinata HOM05D005880 ORTHO05D007114 1.1e-30 137.1 148 49.3
A09p17170 Brassica napus HOM05D005880 ORTHO05D007114 1.4e-30 136.7 148 49.3
BraA09t37350Z Brassica rapa HOM05D005880 ORTHO05D007114 1.4e-30 136.7 148 49.3
CARHR051910 Cardamine hirsuta HOM05D005880 ORTHO05D007114 1.4e-30 136.7 148 50.7
Sed0012668 Sechium edule HOM05D005880 ORTHO05D007114 1.4e-30 136.7 149 55.0
Sp2g03790 Schrenkiella parvula HOM05D005880 ORTHO05D007114 5.4e-30 134.8 148 48.6
Sc16g0012020 Simmondsia chinensis HOM05D005880 ORTHO05D007114 5.4e-30 134.8 148 50.7
Carub.0002s0442 Capsella rubella HOM05D005880 ORTHO05D007114 1.2e-29 133.7 148 48.6
HanXRQChr10g0290391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-29 132.9 150 52.7
HanXRQChr10g0301391 Helianthus annuus HOM05D005880 ORTHO05D007114 2.0e-29 132.9 150 52.7
PSO528G0075 Papaver somniferum HOM05D005880 ORTHO05D007114 3.5e-29 132.1 151 51.0
CANSAT35G1534 Cannabis sativa HOM05D005880 ORTHO05D007114 1.7e-28 129.8 112 58.9
Phvul.002G250100 Phaseolus vulgaris HOM05D005880 ORTHO05D007114 4.3e-27 125.2 149 50.3
CSS0016002 Camellia sinensis var. sinensis HOM05D005880 ORTHO05D007114 1.2e-26 123.6 151 52.3
CANSAT21G1779 Cannabis sativa HOM05D005880 ORTHO05D007114 6.2e-26 121.3 111 59.5
Actinidia26146 Actinidia chinensis HOM05D005880 ORTHO05D007114 1.8e-25 119.8 119 52.9
Ah.06g193070 Amaranthus hybridus HOM05D005880 ORTHO05D007114 1.2e-24 117.1 125 51.2
VMungo0251G0848 Vigna mungo HOM05D005880 ORTHO05D007114 1.2e-24 117.1 149 49.0
CDE08G1156 Ceratophyllum demersum HOM05D005880 ORTHO05D007114 7.5e-24 114.4 148 41.2
AUR62019202 Chenopodium quinoa HOM05D005880 ORTHO05D007114 1.3e-20 103.6 119 52.1
Gohir.A02G126300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.1e-19 100.5 79 64.6
MELO3C019478.2 Cucumis melo HOM05D005880 ORTHO05D007114 1.2e-18 97.1 75 66.7
arahy.Tifrunner.gnm1.ann1.3M3641 Arachis hypogaea HOM05D005880 ORTHO05D007114 2.8e-18 95.9 102 54.9
arahy.Tifrunner.gnm1.ann1.05MEX4 Arachis hypogaea HOM05D005880 ORTHO05D007114 1.8e-17 93.2 102 53.9
Oeu025682.1 Olea europaea HOM05D005880 ORTHO05D007114 2.0e-16 89.7 92 55.4
Lsat_1_v5_gn_5_89321 Lactuca sativa HOM05D005880 ORTHO05D007114 3.4e-16 89.0 89 53.9
Dinv19366 Davidia involucrata HOM05D005880 ORTHO05D007114 2.9e-15 85.9 72 68.1
arahy.Tifrunner.gnm1.ann1.L44J93 Arachis hypogaea HOM05D000101 ORTHO05D003282 1.6e-13 80.1 62 67.7
Gohir.D04G172050 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.6e-13 78.6 132 46.2
Gorai.012G161100 Gossypium raimondii HOM05D005880 ORTHO05D007114 4.6e-13 78.6 132 46.2
SalBow1G5664 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-11 73.6 95 46.3
SalBow5G4729 Salvia bowleyana HOM05D005880 ORTHO05D007114 1.5e-11 73.6 86 46.5
Gohir.A06G179950 Gossypium hirsutum HOM05D005880 ORTHO05D007114 1.9e-11 73.2 67 55.2
CAN.G1577.19 Capsicum annuum HOM05D005880 ORTHO05D007114 2.5e-11 72.8 61 59.0
Oeu000185.1 Olea europaea HOM05D005880 ORTHO05D007114 1.8e-09 66.6 90 47.8
HPP92_024638 Vanilla planifolia HOM05D005880 ORTHO05D007114 1.5e-08 63.5 136 33.8
Gohir.A04G127300 Gossypium hirsutum HOM05D005880 ORTHO05D007114 4.4e-08 62.0 97 46.4


User provided reference genes

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