Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G044000 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.1e-253 879.4 429 100.0
CiPaw.06G147600 Carya illinoinensis HOM05D005359 ORTHO05D006431 1.3e-196 689.9 420 80.0
Haze_01666 Corylus avellana HOM05D005359 ORTHO05D006431 3.1e-187 658.7 420 77.4
QL08p043348 Quercus lobata HOM05D005359 ORTHO05D006431 3.1e-187 658.7 420 77.1
Cfa005525 Carpinus fangiana HOM05D005359 ORTHO05D006431 1.5e-186 656.4 420 76.7
Prupe.1G568000 Prunus persica HOM05D005359 ORTHO05D006431 1.6e-183 646.4 420 75.7
Thecc.02G038700 Theobroma cacao HOM05D005359 ORTHO05D006431 1.3e-180 636.7 420 73.6
Manes.07G015400 Manihot esculenta HOM05D005359 ORTHO05D006431 1.7e-180 636.3 420 72.9
Cpa.g.sc113.63 Carica papaya HOM05D005359 ORTHO05D006431 1.1e-179 633.6 420 74.0
Ciclev10001293m.g Citrus clementina HOM05D005359 ORTHO05D006431 2.6e-178 629.0 420 73.3
Duzib052G1228 Durio zibethinus HOM05D005359 ORTHO05D006431 2.6e-178 629.0 420 72.4
COL.COLO4_17869 Corchorus olitorius HOM05D005359 ORTHO05D006431 1.0e-177 627.1 420 71.9
Eucgr.I02722 Eucalyptus grandis HOM05D005359 ORTHO05D006431 1.0e-177 627.1 420 72.1
Dinv19364 Davidia involucrata HOM05D005359 ORTHO05D006431 7.2e-176 620.9 420 73.6
RcHm_v2.0_Chr7g0222501 Rosa chinensis HOM05D005359 ORTHO05D006431 2.7e-175 619.0 421 72.0
Gohir.D01G169300 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.0e-174 617.1 420 70.2
Gorai.002G210900 Gossypium raimondii HOM05D005359 ORTHO05D006431 1.4e-174 616.7 420 70.2
MD15G1422700 Malus domestica HOM05D005359 ORTHO05D006431 5.1e-174 614.8 421 72.4
Gohir.A01G178400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 1.1e-173 613.6 420 69.8
CANSAT11G0924 Cannabis sativa HOM05D005359 ORTHO05D006431 1.3e-172 610.1 420 72.1
Gorai.008G042100 Gossypium raimondii HOM05D005359 ORTHO05D006431 4.8e-172 608.2 420 70.0
Sed0010360 Sechium edule HOM05D005359 ORTHO05D006431 6.3e-172 607.8 420 69.5
Gohir.A12G031900 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.0e-171 604.4 420 69.5
Lj6g0011599 Lotus japonicus HOM05D005359 ORTHO05D006431 7.0e-171 604.4 420 71.2
Potri.003G019400 Populus trichocarpa HOM05D005359 ORTHO05D006431 9.1e-171 604.0 420 70.7
CANSAT11G2649 Cannabis sativa HOM05D005359 ORTHO05D006431 2.6e-170 602.4 421 71.5
Sabra03G0010900 Salix brachista HOM05D005359 ORTHO05D006431 2.6e-170 602.4 420 70.7
Glyma.15G046900 Glycine max HOM05D005359 ORTHO05D006431 7.7e-170 600.9 420 70.7
Gohir.D12G040400 Gossypium hirsutum HOM05D005359 ORTHO05D006431 7.7e-170 600.9 420 69.5
TWI14G1253 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 7.7e-170 600.9 420 70.0
Lj5A252T45 Lonicera japonica HOM05D005359 ORTHO05D006431 6.5e-169 597.8 420 70.5
Dinv24279 Davidia involucrata HOM05D005359 ORTHO05D006431 2.5e-168 595.9 420 70.7
TWI23G0911 Tripterygium wilfordii HOM05D005359 ORTHO05D006431 3.2e-168 595.5 420 69.0
Sabra01G0162800 Salix brachista HOM05D005359 ORTHO05D006431 7.2e-168 594.3 420 69.8
Potri.001G210800 Populus trichocarpa HOM05D005359 ORTHO05D006431 9.4e-168 594.0 420 70.7
arahy.Tifrunner.gnm1.ann1.HK0KDN Arachis hypogaea HOM05D005359 ORTHO05D006431 1.2e-167 593.6 420 69.5
MD08G1228700 Malus domestica HOM05D005359 ORTHO05D006431 1.6e-167 593.2 405 71.9
Glyma.08G185900 Glycine max HOM05D005359 ORTHO05D006431 6.1e-167 591.3 420 70.0
arahy.Tifrunner.gnm1.ann1.8TZ9EP Arachis hypogaea HOM05D005359 ORTHO05D006431 1.0e-166 590.5 420 68.8
PGR042G0198 Punica granatum HOM05D005359 ORTHO05D006431 2.3e-166 589.3 420 68.3
CSS0002632 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 1.5e-165 586.6 420 69.8
ClCG09G014240 Citrullus lanatus HOM05D005359 ORTHO05D006431 2.0e-165 586.3 420 67.9
FAN08G1144 Fragaria x ananassa HOM05D005359 ORTHO05D006431 2.0e-165 586.3 420 69.5
FvH4_5g29550 Fragaria vesca HOM05D005359 ORTHO05D006431 2.6e-165 585.9 420 69.5
CSS0043414 Camellia sinensis var. sinensis HOM05D005359 ORTHO05D006431 4.4e-165 585.1 420 69.8
FAN18G3183 Fragaria x ananassa HOM05D005359 ORTHO05D006431 9.7e-165 583.9 420 69.3
Lj4g0002358 Lotus japonicus HOM05D005359 ORTHO05D006431 1.3e-164 583.6 425 68.0
vmacro01763 Vaccinium macrocarpon HOM05D005359 ORTHO05D006431 2.8e-164 582.4 420 68.6
Phvul.002G250300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 6.3e-164 581.3 420 68.3
Medtr2g007220 Medicago truncatula HOM05D005359 ORTHO05D006431 2.4e-163 579.3 420 67.9
Rhsim11G0129700 Rhododendron simsii HOM05D005359 ORTHO05D006431 2.4e-163 579.3 420 68.6
Glyma.08G127900 Glycine max HOM05D005359 ORTHO05D006431 1.6e-162 576.6 421 69.1
CsaV3_6G037270 Cucumis sativus L. HOM05D005359 ORTHO05D006431 2.6e-162 575.9 420 66.2
Cc02_g22460 Coffea canephora HOM05D005359 ORTHO05D006431 4.5e-162 575.1 420 67.4
FAN13G1157 Fragaria x ananassa HOM05D005359 ORTHO05D006431 7.7e-162 574.3 420 67.9
TPR.G2126 Trifolium pratense HOM05D005359 ORTHO05D006431 7.7e-162 574.3 420 67.4
MELO3C014388.2 Cucumis melo HOM05D005359 ORTHO05D006431 1.3e-161 573.5 415 66.7
VMungo0540G0616 Vigna mungo HOM05D005359 ORTHO05D006431 3.8e-161 572.0 420 66.9
VMungo0251G3193 Vigna mungo HOM05D005359 ORTHO05D006431 5.0e-161 571.6 420 67.4
TAR376G0200 Trochodendron aralioides HOM05D005359 ORTHO05D006431 6.5e-161 571.2 420 67.9
Ca_00078_v3 Cicer arietinum L. HOM05D005359 ORTHO05D006431 1.9e-160 569.7 419 67.5
Glyma.05G169600 Glycine max HOM05D005359 ORTHO05D006431 2.5e-160 569.3 421 67.9
Psat2g122240 Pisum sativum HOM05D005359 ORTHO05D006431 3.2e-160 568.9 420 66.4
TAR628G1654 Trochodendron aralioides HOM05D005359 ORTHO05D006431 1.2e-159 567.0 420 66.9
DCAR_013987 Daucus carota HOM05D005359 ORTHO05D006431 6.1e-159 564.7 420 66.2
Oeu008891.1 Olea europaea HOM05D005359 ORTHO05D006431 3.3e-157 558.9 420 67.1
Nn5g28206 Nelumbo nucifera HOM05D005359 ORTHO05D006431 5.7e-157 558.1 420 66.0
MSTRG.5231 Avicennia marina HOM05D005359 ORTHO05D006431 1.7e-156 556.6 420 66.9
Phvul.006G214300 Phaseolus vulgaris HOM05D005359 ORTHO05D006431 3.7e-156 555.4 421 65.3
EL10Ac6g14556 Beta vulgaris HOM05D005359 ORTHO05D006431 3.1e-155 552.4 425 65.2
AUR62007773 Chenopodium quinoa HOM05D005359 ORTHO05D006431 1.2e-154 550.4 425 64.5
THA.LOC104819321 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 1.2e-154 550.4 421 65.8
AUR62002965 Chenopodium quinoa HOM05D005359 ORTHO05D006431 2.7e-154 549.3 425 64.2
Hund05788 Selenicereus undatus HOM05D005359 ORTHO05D006431 3.5e-154 548.9 423 65.0
Lsat_1_v5_gn_5_109981 Lactuca sativa HOM05D005359 ORTHO05D006431 7.7e-154 547.7 421 65.3
DCAR_031890 Daucus carota HOM05D005359 ORTHO05D006431 1.3e-153 547.0 407 66.1
HanXRQChr10g0289981 Helianthus annuus HOM05D005359 ORTHO05D006431 1.7e-153 546.6 420 64.0
Lalb_Chr20g0123431 Lupinus albus HOM05D005359 ORTHO05D006431 1.7e-153 546.6 420 64.3
GSVIVG01022967001 Vitis vinifera HOM05D005359 ORTHO05D006431 1.9e-152 543.1 423 66.2
HanXRQChr16g0514561 Helianthus annuus HOM05D005359 ORTHO05D006431 1.6e-151 540.0 420 65.2
SGA_v2.0_scaffold292G47368 Striga asiatica HOM05D005359 ORTHO05D006431 3.6e-151 538.9 408 66.7
THA.LOC104809588 Tarenaya hassleriana HOM05D005359 ORTHO05D006431 8.0e-151 537.7 420 64.0
SalBow6G6401 Salvia bowleyana HOM05D005359 ORTHO05D006431 2.3e-150 536.2 420 63.8
Aqoxy5G02275 Aquilegia oxysepala HOM05D005359 ORTHO05D006431 5.2e-150 535.0 422 63.7
ECA234G2063 Erigeron canadensis HOM05D005359 ORTHO05D006431 8.8e-150 534.3 420 62.9
Peaxi162Scf00011g00352 Petunia axillaris HOM05D005359 ORTHO05D006431 4.4e-149 531.9 421 63.4
Aa31LG1G4050 Aethionema arabicum HOM05D005359 ORTHO05D006431 1.8e-147 526.6 418 62.2
Sc16g0001650 Simmondsia chinensis HOM05D005359 ORTHO05D006431 2.4e-147 526.2 424 63.4
Sp1g09480 Schrenkiella parvula HOM05D005359 ORTHO05D006431 1.3e-145 520.4 420 62.9
Thhalv10007703m.g Eutrema salsugineum HOM05D005359 ORTHO05D006431 5.0e-145 518.5 420 61.9
HanXRQChr06g0169581 Helianthus annuus HOM05D005359 ORTHO05D006431 1.1e-144 517.3 443 59.6
AL1G21710 Arabidopsis lyrata HOM05D005359 ORTHO05D006431 1.9e-144 516.5 420 62.4
Nitab4.5_0007420g0030 Nicotiana tabacum HOM05D005359 ORTHO05D006431 4.2e-144 515.4 421 63.2
AT1G10780 Arabidopsis thaliana HOM05D005359 ORTHO05D006431 2.1e-143 513.1 420 61.7
CARHR011000 Cardamine hirsuta HOM05D005359 ORTHO05D006431 2.8e-143 512.7 420 61.4
A09p64680 Brassica napus HOM05D005359 ORTHO05D006431 2.3e-142 509.6 420 60.7
BraA09t41824Z Brassica rapa HOM05D005359 ORTHO05D006431 2.3e-142 509.6 420 60.7
BolC8t52390H Brassica oleracea HOM05D005359 ORTHO05D006431 5.2e-142 508.4 420 60.7
C08p48500 Brassica napus HOM05D005359 ORTHO05D006431 1.5e-141 506.9 420 60.2
unitig_26.g9020 Utricularia gibba HOM05D005359 ORTHO05D006431 2.2e-140 503.1 420 60.2
Migut.N01041 Erythranthe guttata HOM05D005359 ORTHO05D006431 3.7e-140 502.3 420 60.2
Carub.0001s1033 Capsella rubella HOM05D005359 ORTHO05D006431 3.1e-139 499.2 420 59.5
Sed0018525 Sechium edule HOM05D005359 ORTHO05D006431 1.7e-137 493.4 420 57.6
MBI06_g20718_MAGBIO Magnolia biondii HOM05D005359 ORTHO05D006431 8.6e-137 491.1 418 57.4
Lalb_Chr07g0185731 Lupinus albus HOM05D005359 ORTHO05D006431 2.5e-136 489.6 421 58.2
Sopen01g046670 Solanum pennellii HOM05D005359 ORTHO05D006431 5.6e-136 488.4 421 59.6
ATR0193G009 Amborella trichopoda HOM05D005359 ORTHO05D006431 3.6e-135 485.7 418 58.1
PGSC0003DMG400023758 Solanum tuberosum HOM05D005359 ORTHO05D006431 1.4e-134 483.8 421 58.9
Nitab4.5_0002245g0060 Nicotiana tabacum HOM05D005359 ORTHO05D006431 5.2e-134 481.9 421 60.6
ECA236G4790 Erigeron canadensis HOM05D005359 ORTHO05D006431 1.2e-133 480.7 377 62.9
CAN.G1577.14 Capsicum annuum HOM05D005359 ORTHO05D006431 2.6e-133 479.6 422 58.8
Ah.03g138120 Amaranthus hybridus HOM05D005359 ORTHO05D006431 2.7e-122 443.0 425 54.4
Os09g0454300 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.5e-122 442.6 421 53.4
Solyc01g104230.4 Solanum lycopersicum HOM05D005359 ORTHO05D006431 6.0e-122 441.8 324 67.6
Hma1.2p1_0217F.1_g092010 Hydrangea macrophylla HOM05D005359 ORTHO05D006431 8.9e-118 427.9 251 82.1
Thecc.02G038500 Theobroma cacao HOM05D005359 ORTHO05D006431 2.7e-114 416.4 282 69.9
Zm00001eb176520 Zea mays HOM05D005359 ORTHO05D006431 1.7e-113 413.7 420 49.8
Zm00001eb100430 Zea mays HOM05D005359 ORTHO05D006431 3.6e-111 406.0 403 51.1
Zm00001eb037840 Zea mays HOM05D005359 ORTHO05D006431 3.2e-107 392.9 425 48.5
Mapoly0113s0005 Marchantia polymorpha HOM05D005359 ORTHO05D006431 1.7e-100 370.5 411 45.0
Lsat_1_v5_gn_4_48740 Lactuca sativa HOM05D005359 ORTHO05D006431 2.3e-97 360.1 320 57.8
Os08g0469500 Oryza sativa ssp. japonica HOM05D005359 ORTHO05D006431 3.6e-95 352.8 422 44.5
AagrBONN_evm.TU.Sc2ySwM_117.2184 Anthoceros agrestis HOM05D005359 ORTHO05D006431 3.3e-80 303.1 396 42.2
SMO169G0280 Selaginella moellendorffii HOM05D005359 ORTHO05D006431 1.4e-78 297.7 405 41.5
Oeu033126.1 Olea europaea HOM05D005359 ORTHO05D006431 4.0e-78 296.2 268 59.3
CDE11G1073 Ceratophyllum demersum HOM05D005359 ORTHO05D006431 2.5e-72 276.9 317 43.2
HPP92_010977 Vanilla planifolia HOM05D005359 ORTHO05D006431 5.3e-70 269.2 302 46.7
arahy.Tifrunner.gnm1.ann1.3FYK03 Arachis hypogaea HOM05D005359 ORTHO05D006431 7.7e-69 265.4 266 53.8
Nn1g08733 Nelumbo nucifera HOM05D005359 ORTHO05D006431 6.5e-68 262.3 257 50.6
Atru.chr6.646 Acer truncatum HOM05D005359 ORTHO05D006431 2.2e-60 237.3 134 79.9
BcaC05g24954 Brassica carinata HOM05D005359 ORTHO05D006431 3.1e-46 190.3 155 61.9
arahy.Tifrunner.gnm1.ann1.BYQ4G2 Arachis hypogaea HOM05D005359 ORTHO05D006431 1.1e-38 165.2 99 75.8
arahy.Tifrunner.gnm1.ann1.94J17Q Arachis hypogaea HOM05D005359 ORTHO05D006431 7.2e-35 152.5 91 75.8
Dinv24276 Davidia involucrata HOM05D005359 ORTHO05D006431 2.1e-34 151.0 96 76.0
arahy.Tifrunner.gnm1.ann1.E0G9L5 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.6e-28 129.4 74 77.0
arahy.Tifrunner.gnm1.ann1.B308TG Arachis hypogaea HOM05D005359 ORTHO05D006431 1.5e-27 128.3 71 78.9
arahy.Tifrunner.gnm1.ann1.F717DE Arachis hypogaea HOM05D005359 ORTHO05D006431 4.7e-26 123.2 71 77.5
arahy.Tifrunner.gnm1.ann1.HDLM7U Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-25 119.4 71 76.1
arahy.Tifrunner.gnm1.ann1.X0Q2J1 Arachis hypogaea HOM05D005359 ORTHO05D006431 6.8e-25 119.4 71 76.1
Oeu056678.1 Olea europaea HOM05D005359 ORTHO05D006431 4.4e-24 116.7 106 55.7
MSTRG.27843 Avicennia marina HOM05D005359 ORTHO05D006431 5.0e-20 103.2 100 55.0
SMO111G0157 Selaginella moellendorffii HOM05D019739 ORTHO05D026044 8.1e-10 69.3 425 22.4
SGA_v2.0_scaffold24G10274 Striga asiatica HOM05D000312 ORTHO05D000221 2.6e-08 64.3 387 23.5
COL.COLO4_18880 Corchorus olitorius HOM05D000051 ORTHO05D013057 4.9e-07 60.1 244 27.9
FvH4_3g17080 Fragaria vesca HOM05D000051 ORTHO05D000015 6.4e-07 59.7 231 26.0
Peaxi162Scf00045g00458 Petunia axillaris HOM05D001396 ORTHO05D000493 6.4e-07 59.7 264 26.1
FAN11G0701 Fragaria x ananassa HOM05D000051 ORTHO05D000015 8.3e-07 59.3 231 26.4
HanXRQChr03g0060631 Helianthus annuus HOM05D006588 ORTHO05D008272 1.1e-06 58.9 220 26.4
Rhsim10G0115300 Rhododendron simsii HOM05D006615 ORTHO05D007999 1.1e-06 58.9 168 32.7
FAN17G2978 Fragaria x ananassa HOM05D030415 ORTHO05D006431 2.4e-06 57.8 107 39.3
Peaxi162Scf00066g01621 Petunia axillaris HOM05D001396 ORTHO05D000493 7.1e-06 56.2 247 23.9


User provided reference genes

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