Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 1.4e-221 772.7 418 100.0
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 1.3e-182 643.3 419 82.3
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 2.5e-181 639.0 418 82.1
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.6e-164 582.0 416 76.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 3.4e-162 575.5 413 75.1
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.4e-162 575.1 418 75.4
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.3e-161 573.5 418 75.4
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-161 573.2 418 75.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 4.9e-161 571.6 416 75.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 1.1e-160 570.5 417 75.3
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.1e-160 570.5 416 75.5
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.4e-160 569.3 426 73.0
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 3.2e-160 568.9 417 75.3
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 4.1e-160 568.5 418 74.9
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.6e-159 566.6 420 74.0
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 2.7e-159 565.8 419 74.5
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.9e-159 564.7 416 73.8
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 7.8e-159 564.3 415 76.1
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 3.9e-158 562.0 417 74.3
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 5.0e-158 561.6 417 73.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-157 560.5 416 74.5
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 1.5e-157 560.1 416 74.3
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.5e-157 560.1 416 74.8
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 5.2e-155 551.6 415 73.7
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 2.0e-154 549.7 416 73.8
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.6e-154 549.3 417 75.8
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 4.4e-154 548.5 440 69.5
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 5.8e-154 548.1 413 72.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.5e-154 547.7 413 75.3
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 9.8e-154 547.4 416 72.6
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.7e-153 546.6 417 71.9
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 3.2e-152 542.3 412 73.5
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 5.4e-152 541.6 417 73.9
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 1.6e-151 540.0 414 71.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 2.7e-151 539.3 420 75.2
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.7e-151 539.3 416 74.3
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 4.6e-151 538.5 466 66.3
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 6.0e-151 538.1 416 71.9
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 3.0e-150 535.8 415 74.9
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 1.1e-149 533.9 410 73.7
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 4.3e-149 531.9 416 72.8
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 2.8e-148 529.3 414 71.7
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 3.1e-147 525.8 423 68.3
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 1.3e-145 520.4 418 73.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.7e-145 518.8 418 69.9
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 3.7e-145 518.8 450 67.8
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 8.3e-145 517.7 415 71.3
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 4.1e-144 515.4 416 70.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 9.2e-144 514.2 412 71.8
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 1.2e-143 513.8 413 70.5
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.6e-143 513.5 421 72.7
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 1.0e-142 510.8 417 69.8
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 7.3e-141 504.6 410 71.7
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.6e-140 502.3 372 73.9
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.1e-139 500.7 487 63.2
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.7e-137 493.4 374 74.9
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 7.8e-135 484.6 418 67.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 7.8e-135 484.6 431 66.4
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.3e-134 483.8 420 69.3
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 1.2e-132 477.2 372 72.6
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.6e-132 476.9 415 67.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 1.6e-132 476.9 449 61.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 6.2e-132 474.9 411 69.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 6.9e-131 471.5 418 65.8
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 7.6e-130 468.0 422 66.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 2.2e-129 466.5 419 65.4
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 2.2e-129 466.5 412 65.5
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 6.4e-129 464.9 418 64.6
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.4e-128 463.8 418 64.4
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 2.7e-127 459.5 409 63.6
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 6.0e-127 458.4 409 66.3
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 3.0e-126 456.1 421 64.8
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.9e-126 455.7 421 63.9
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 8.7e-126 454.5 436 61.2
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 9.6e-125 451.1 411 65.9
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.1e-123 447.6 412 63.8
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 6.9e-123 444.9 409 65.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 1.5e-122 443.7 409 64.3
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 2.9e-121 439.5 373 66.5
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 3.8e-121 439.1 401 63.1
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 4.9e-121 438.7 410 63.4
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 8.4e-121 438.0 412 63.3
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.2e-120 436.0 423 61.9
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 7.1e-120 434.9 451 59.6
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-118 429.9 402 62.7
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.3e-118 429.9 356 69.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.1e-118 428.7 414 63.0
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 1.5e-117 427.2 404 61.4
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 2.5e-117 426.4 420 61.9
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.8e-116 422.9 391 63.2
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 2.8e-116 422.9 415 62.2
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 5.8e-114 415.2 392 62.5
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 5.8e-114 415.2 392 62.5
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 1.2e-111 407.5 396 61.4
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.3e-110 404.1 406 62.3
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.3e-110 404.1 404 60.4
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 1.8e-110 403.7 276 76.8
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.0e-110 402.9 401 59.9
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.6e-109 398.7 427 57.4
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 9.6e-109 397.9 409 58.2
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 1.8e-107 393.7 298 73.5
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 6.9e-107 391.7 413 58.6
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.3e-105 387.5 348 62.9
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 2.9e-105 386.3 418 58.4
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 3.1e-99 366.3 400 60.5
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 6.5e-97 358.6 399 55.6
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 1.9e-96 357.1 449 51.0
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 3.6e-95 352.8 313 64.2
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.3e-94 350.1 403 56.8
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 4.3e-93 345.9 307 66.8
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.8e-92 342.4 414 55.3
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.4e-91 340.9 273 70.0
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 1.4e-86 324.3 320 59.4
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 2.3e-86 323.6 270 71.9
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.2e-82 311.2 255 67.1
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 7.7e-82 308.5 263 65.8
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.2e-80 302.8 340 55.9
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 9.7e-77 291.6 311 58.2
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 3.2e-72 276.6 182 80.2
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 4.2e-72 276.2 273 65.9
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 2.3e-70 270.4 276 61.2
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 5.2e-70 269.2 196 73.5
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 1.2e-69 268.1 271 61.3
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 1.5e-69 267.7 273 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 6.3e-68 262.3 410 47.6
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.4e-67 260.4 271 60.1
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 7.0e-67 258.8 403 46.2
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 3.4e-61 240.0 246 56.5
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 9.8e-61 238.4 442 42.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.1e-59 235.0 334 47.9
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.9e-56 224.2 384 43.2
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 1.9e-56 224.2 265 55.5
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 7.2e-56 222.2 186 67.7
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 9.5e-56 221.9 136 83.1
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 8.0e-55 218.8 135 83.0
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.7e-52 209.9 266 51.1
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 9.5e-48 195.3 182 62.6
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.2e-47 194.9 119 86.6
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 1.3e-41 174.9 151 62.9
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.5e-40 171.4 417 37.6
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.7e-39 166.4 148 65.5
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.3e-32 143.7 506 31.6
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 8.9e-30 135.6 113 65.5
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-21 107.5 125 56.0
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 4.1e-19 100.1 232 37.9
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 3.4e-13 80.5 180 36.7
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 7.3e-08 62.8 108 38.0
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 2.8e-07 60.8 56 51.8
SEGI_11287 Sequoiadendron giganteum HOM05D003482 ORTHO05D004194 1.1e-06 58.9 68 47.1


User provided reference genes

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