Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G027100 Carya illinoinensis HOM05D004984 ORTHO05D006508 7.2e-267 923.3 456 100.0
QL11p026578 Quercus lobata HOM05D004984 ORTHO05D006508 1.2e-221 773.1 455 84.2
Dinv08970 Davidia involucrata HOM05D004984 ORTHO05D006508 3.4e-216 755.0 457 82.3
Prupe.8G074900 Prunus persica HOM05D004984 ORTHO05D006508 4.4e-216 754.6 457 83.2
Thecc.02G125200 Theobroma cacao HOM05D004984 ORTHO05D006508 4.4e-216 754.6 457 82.7
CiPaw.06G160700 Carya illinoinensis HOM05D004984 ORTHO05D006508 2.2e-215 752.3 456 82.7
MD05G1049600 Malus domestica HOM05D004984 ORTHO05D006508 7.1e-214 747.3 457 82.3
RcHm_v2.0_Chr6g0269501 Rosa chinensis HOM05D004984 ORTHO05D006508 1.6e-213 746.1 454 81.7
MD10G1056700 Malus domestica HOM05D004984 ORTHO05D006508 7.8e-213 743.8 457 81.6
GSVIVG01038516001 Vitis vinifera HOM05D004984 ORTHO05D006508 3.9e-212 741.5 458 80.8
Duzib052G0292 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-211 740.0 457 81.2
Duzib132G1162 Durio zibethinus HOM05D004984 ORTHO05D006508 1.1e-211 740.0 457 80.7
FAN27G1475 Fragaria x ananassa HOM05D004984 ORTHO05D006508 1.5e-211 739.6 452 81.2
ClCG10G009790 Citrullus lanatus HOM05D004984 ORTHO05D006508 2.5e-211 738.8 457 79.9
FvH4_2g11180 Fragaria vesca HOM05D004984 ORTHO05D006508 7.3e-211 737.3 452 81.0
FAN20G2814 Fragaria x ananassa HOM05D004984 ORTHO05D006508 7.3e-211 737.3 452 81.0
Dinv16030 Davidia involucrata HOM05D004984 ORTHO05D006508 1.2e-210 736.5 441 83.2
MELO3C018046.2 Cucumis melo HOM05D004984 ORTHO05D006508 3.6e-210 734.9 457 79.6
Atru.chr6.1348 Acer truncatum HOM05D004984 ORTHO05D006508 1.8e-209 732.6 458 80.6
Gohir.D02G202500 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-209 732.3 457 80.1
CsaV3_4G014670 Cucumis sativus L. HOM05D004984 ORTHO05D006508 4.0e-209 731.5 457 79.6
FAN15G1055 Fragaria x ananassa HOM05D004984 ORTHO05D006508 4.0e-209 731.5 452 80.1
Gorai.005G227400 Gossypium raimondii HOM05D004984 ORTHO05D006508 6.8e-209 730.7 457 79.9
Gohir.A03G178800 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.0e-208 729.2 457 79.9
Sed0007187 Sechium edule HOM05D004984 ORTHO05D006508 2.6e-208 728.8 457 78.8
TAR376G0949 Trochodendron aralioides HOM05D004984 ORTHO05D006508 9.9e-208 726.9 457 78.6
Hma1.2p1_0435F.1_g152620 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 6.4e-207 724.2 456 78.7
Eucgr.I02584 Eucalyptus grandis HOM05D004984 ORTHO05D006508 8.4e-207 723.8 458 79.9
Potri.009G079600 Populus trichocarpa HOM05D004984 ORTHO05D006508 6.0e-205 717.6 463 77.3
Cc02_g20610 Coffea canephora HOM05D004984 ORTHO05D006508 1.3e-204 716.5 444 79.5
CSS0038067 Camellia sinensis var. sinensis HOM05D004984 ORTHO05D006508 2.3e-204 715.7 448 78.3
Lj5A225T68 Lonicera japonica HOM05D004984 ORTHO05D006508 2.3e-204 715.7 460 78.7
TAR381G0604 Trochodendron aralioides HOM05D004984 ORTHO05D006508 2.5e-203 712.2 441 80.0
PGR142G0200 Punica granatum HOM05D004984 ORTHO05D006508 9.6e-203 710.3 458 77.7
PGSC0003DMG402029578 Solanum tuberosum HOM05D004984 ORTHO05D006508 4.7e-202 708.0 456 75.9
TAR625G1028 Trochodendron aralioides HOM05D004984 ORTHO05D006508 8.1e-202 707.2 457 77.7
Peaxi162Scf00152g00730 Petunia axillaris HOM05D004984 ORTHO05D006508 6.9e-201 704.1 458 76.6
Sabra09G0061600 Salix brachista HOM05D004984 ORTHO05D006508 5.8e-200 701.0 480 73.5
CAN.G908.9 Capsicum annuum HOM05D004984 ORTHO05D006508 7.6e-200 700.7 445 76.6
Sed0006594 Sechium edule HOM05D004984 ORTHO05D006508 1.7e-199 699.5 462 76.0
Gohir.D04G158100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.9e-199 698.7 458 76.4
Aqoxy6G00646 Aquilegia oxysepala HOM05D004984 ORTHO05D006508 6.4e-199 697.6 459 76.5
Oeu059891.1 Olea europaea HOM05D004984 ORTHO05D006508 8.4e-199 697.2 448 77.7
Actinidia02410 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.1e-198 696.8 457 75.9
Gohir.A04G116400 Gossypium hirsutum HOM05D004984 ORTHO05D006508 1.1e-198 696.8 458 76.2
Sopen08g022650 Solanum pennellii HOM05D004984 ORTHO05D006508 1.1e-198 696.8 440 77.5
Manes.07G046600 Manihot esculenta HOM05D004984 ORTHO05D006508 1.4e-198 696.4 457 74.4
PSO532G0022 Papaver somniferum HOM05D004984 ORTHO05D006508 1.4e-198 696.4 461 75.7
THA.LOC104808837 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 1.4e-198 696.4 449 77.5
PSO541G0041 Papaver somniferum HOM05D004984 ORTHO05D006508 2.4e-198 695.7 461 75.7
ATR0800G083 Amborella trichopoda HOM05D004984 ORTHO05D006508 4.2e-198 694.9 458 75.1
MSTRG.23114 Avicennia marina HOM05D004984 ORTHO05D006508 4.2e-198 694.9 449 76.6
Ciclev10028425m.g Citrus clementina HOM05D004984 ORTHO05D006508 4.2e-198 694.9 456 77.2
Gorai.012G145500 Gossypium raimondii HOM05D004984 ORTHO05D006508 7.1e-198 694.1 458 76.2
THA.LOC104815368 Tarenaya hassleriana HOM05D004984 ORTHO05D006508 7.1e-198 694.1 453 76.6
Potri.001G285300 Populus trichocarpa HOM05D004984 ORTHO05D006508 1.6e-197 693.0 463 74.1
BcaB06g26775 Brassica carinata HOM05D004984 ORTHO05D006508 6.0e-197 691.0 452 76.8
SalBow6G5880 Salvia bowleyana HOM05D004984 ORTHO05D006508 7.8e-197 690.6 448 75.4
A07p06740 Brassica napus HOM05D004984 ORTHO05D006508 1.3e-196 689.9 452 76.3
Sp6g01600 Schrenkiella parvula HOM05D004984 ORTHO05D006508 3.9e-196 688.3 453 76.4
DCAR_029278 Daucus carota HOM05D004984 ORTHO05D006508 5.1e-196 688.0 444 77.7
Glyma.13G254800 Glycine max HOM05D004984 ORTHO05D006508 5.1e-196 688.0 471 75.2
BraA07t28467Z Brassica rapa HOM05D004984 ORTHO05D006508 6.6e-196 687.6 452 76.1
Glyma.15G060000 Glycine max HOM05D004984 ORTHO05D006508 8.7e-196 687.2 471 75.4
Aa31sc202G40 Aethionema arabicum HOM05D004984 ORTHO05D006508 1.5e-195 686.4 444 77.5
Thhalv10002529m.g Eutrema salsugineum HOM05D004984 ORTHO05D006508 1.5e-195 686.4 421 80.3
BcaC06g35862 Brassica carinata HOM05D004984 ORTHO05D006508 1.9e-195 686.0 452 76.1
BolC7t41481H Brassica oleracea HOM05D004984 ORTHO05D006508 1.9e-195 686.0 452 76.1
vmacro01898 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-195 685.6 433 78.3
vmacro23356 Vaccinium macrocarpon HOM05D004984 ORTHO05D006508 2.5e-195 685.6 433 78.3
C07p10310 Brassica napus HOM05D004984 ORTHO05D006508 4.3e-195 684.9 452 75.9
Hund00395 Selenicereus undatus HOM05D004984 ORTHO05D006508 1.3e-194 683.3 457 73.7
Nn1g05667 Nelumbo nucifera HOM05D004984 ORTHO05D006508 1.6e-194 682.9 461 74.6
CDE06G1646 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 2.1e-194 682.6 458 74.5
AL3G42000 Arabidopsis lyrata HOM05D004984 ORTHO05D006508 2.8e-194 682.2 455 75.6
SGA_v2.0_scaffold219G42554 Striga asiatica HOM05D004984 ORTHO05D006508 4.8e-194 681.4 453 75.1
VMungo0540G0195 Vigna mungo HOM05D004984 ORTHO05D006508 1.1e-193 680.2 454 75.6
Medtr2g010000 Medicago truncatula HOM05D004984 ORTHO05D006508 3.1e-193 678.7 461 75.5
Psat1g212920 Pisum sativum HOM05D004984 ORTHO05D006508 4.0e-193 678.3 454 76.4
TWI14G0615 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 5.3e-193 677.9 457 74.6
Ca_00179_v3 Cicer arietinum L. HOM05D004984 ORTHO05D006508 6.9e-193 677.6 461 75.5
ECA234G3445 Erigeron canadensis HOM05D004984 ORTHO05D006508 9.0e-193 677.2 423 78.0
Lsat_1_v5_gn_5_110941 Lactuca sativa HOM05D004984 ORTHO05D006508 1.2e-192 676.8 451 74.5
CARHR102180 Cardamine hirsuta HOM05D004984 ORTHO05D006508 1.5e-192 676.4 455 75.4
Migut.B00524 Erythranthe guttata HOM05D004984 ORTHO05D006508 1.5e-192 676.4 450 75.6
Lj6g0001628 Lotus japonicus HOM05D004984 ORTHO05D006508 3.4e-192 675.2 471 73.2
HanXRQChr10g0291211 Helianthus annuus HOM05D004984 ORTHO05D006508 1.3e-191 673.3 423 78.0
TPR.G32658 Trifolium pratense HOM05D004984 ORTHO05D006508 1.7e-191 672.9 471 74.3
Lalb_Chr15g0090281 Lupinus albus HOM05D004984 ORTHO05D006508 2.9e-191 672.2 474 73.4
Carub.0003s2601 Capsella rubella HOM05D004984 ORTHO05D006508 9.3e-190 667.2 421 78.6
Phvul.006G199900 Phaseolus vulgaris HOM05D004984 ORTHO05D006508 1.6e-189 666.4 471 72.2
Gohir.D13G048100 Gossypium hirsutum HOM05D004984 ORTHO05D006508 3.5e-189 665.2 457 73.3
Gohir.A13G049600 Gossypium hirsutum HOM05D004984 ORTHO05D006508 2.3e-188 662.5 458 73.4
Gorai.013G053700 Gossypium raimondii HOM05D004984 ORTHO05D006508 3.0e-188 662.1 457 73.1
TWI59G1371 Tripterygium wilfordii HOM05D004984 ORTHO05D006508 6.7e-188 661.0 457 72.2
AUR62027083 Chenopodium quinoa HOM05D004984 ORTHO05D006508 2.5e-187 659.1 456 71.7
HanXRQChr01g0009891 Helianthus annuus HOM05D004984 ORTHO05D006508 6.2e-186 654.4 420 76.2
Lsat_1_v5_gn_7_82880 Lactuca sativa HOM05D004984 ORTHO05D006508 1.1e-185 653.7 447 73.2
EL10Ac9g22123 Beta vulgaris HOM05D004984 ORTHO05D006508 9.0e-185 650.6 457 71.6
AUR62030922 Chenopodium quinoa HOM05D004984 ORTHO05D006508 9.9e-184 647.1 456 70.8
Nn5g29788 Nelumbo nucifera HOM05D004984 ORTHO05D006508 9.3e-182 640.6 454 71.4
Oeu010515.3 Olea europaea HOM05D004984 ORTHO05D006508 1.2e-181 640.2 567 60.8
AT2G04305 Arabidopsis thaliana HOM05D004984 ORTHO05D006508 1.6e-181 639.8 420 76.2
Nitab4.5_0006251g0010 Nicotiana tabacum HOM05D004984 ORTHO05D006508 7.4e-179 630.9 458 69.9
Peaxi162Scf00003g03028 Petunia axillaris HOM05D004984 ORTHO05D006508 7.4e-179 630.9 440 70.2
DCAR_021894 Daucus carota HOM05D004984 ORTHO05D006508 3.8e-175 618.6 452 68.8
MBI16_g10445_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 3.8e-175 618.6 445 70.8
Sopen10g018750 Solanum pennellii HOM05D004984 ORTHO05D006508 5.5e-174 614.8 455 68.4
SGA_v2.0_scaffold32G12944 Striga asiatica HOM05D004984 ORTHO05D006508 9.3e-174 614.0 494 64.6
Solyc10g047820.1 Solanum lycopersicum HOM05D004984 ORTHO05D006508 1.6e-173 613.2 455 68.4
Sabra16G0177800 Salix brachista HOM05D004984 ORTHO05D006508 4.6e-173 611.7 463 67.4
PGSC0003DMG400004399 Solanum tuberosum HOM05D004984 ORTHO05D006508 2.5e-171 605.9 456 67.5
HPP92_019493 Vanilla planifolia HOM05D004984 ORTHO05D006508 7.4e-171 604.4 421 70.8
ECA236G3860 Erigeron canadensis HOM05D004984 ORTHO05D006508 2.8e-170 602.4 360 80.8
unitig_744.g24196 Utricularia gibba HOM05D004984 ORTHO05D006508 3.7e-170 602.1 422 69.4
SEGI_07926 Sequoiadendron giganteum HOM05D004984 ORTHO05D006508 1.5e-168 596.7 442 68.8
Nitab4.5_0004008g0090 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.6e-160 569.3 445 64.7
SalBow6G7210 Salvia bowleyana HOM05D004984 ORTHO05D006508 3.4e-160 568.9 425 67.5
Solyc08g069000.4 Solanum lycopersicum HOM05D004984 ORTHO05D006508 2.9e-159 565.8 372 75.3
Actinidia00320 Actinidia chinensis HOM05D004984 ORTHO05D006508 1.8e-156 556.6 459 64.7
HPP92_016673 Vanilla planifolia HOM05D004984 ORTHO05D006508 3.0e-156 555.8 440 62.5
Ah.01g007220 Amaranthus hybridus HOM05D004984 ORTHO05D006508 6.9e-153 544.7 362 73.8
Hma1.2p1_0383F.1_g140540 Hydrangea macrophylla HOM05D004984 ORTHO05D006508 3.2e-150 535.8 396 69.7
Mapoly0036s0130 Marchantia polymorpha HOM05D004984 ORTHO05D006508 1.5e-147 526.9 451 59.2
unitig_0.g892 Utricularia gibba HOM05D000062 ORTHO05D000043 6.5e-143 511.5 342 72.8
MBI16_g43037_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 4.7e-141 505.4 351 71.5
Nitab4.5_0000088g0020 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.3e-140 503.1 453 59.4
Pp3c9_6010 Physcomitrium patens HOM05D004984 ORTHO05D006508 7.5e-139 498.0 432 60.0
Pp3c15_5630 Physcomitrium patens HOM05D004984 ORTHO05D006508 1.3e-138 497.3 438 60.3
Os08g0130000 Oryza sativa ssp. japonica HOM05D004984 ORTHO05D006508 2.8e-138 496.1 437 57.4
AagrBONN_evm.TU.Sc2ySwM_368.1921 Anthoceros agrestis HOM05D004984 ORTHO05D006508 1.6e-133 480.3 433 57.0
CDE04G0284 Ceratophyllum demersum HOM05D004984 ORTHO05D006508 1.9e-126 456.8 457 55.6
Cpa.g.sc20.35 Carica papaya HOM05D004984 ORTHO05D006508 2.8e-125 453.0 322 69.9
MBI16_g42150_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D006508 1.2e-109 401.0 282 69.1
Nitab4.5_0002290g0050 Nicotiana tabacum HOM05D004984 ORTHO05D006508 2.0e-104 383.6 336 61.3
Haze_10397 Corylus avellana HOM05D004984 ORTHO05D006508 1.7e-98 364.0 208 87.0
Lalb_Chr18g0060331 Lupinus albus HOM05D004984 ORTHO05D006508 4.3e-94 349.4 258 67.8
Zm00001eb173240 Zea mays HOM05D004984 ORTHO05D006508 4.7e-93 345.9 258 65.1
Cpa.g.sc20.38 Carica papaya HOM05D004984 ORTHO05D006508 2.3e-87 327.0 212 77.8
MBI16_g10446_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D243960 3.4e-83 313.2 443 42.7
Lalb_Chr18g0060321 Lupinus albus HOM05D004984 ORTHO05D006508 6.2e-77 292.4 198 74.7
DCAR_029279 Daucus carota HOM05D004984 ORTHO05D006508 9.9e-67 258.5 181 72.9
HanXRQChr09g0257011 Helianthus annuus HOM05D004984 ORTHO05D029932 5.9e-51 206.1 154 68.8
Lsat_1_v5_gn_7_73760 Lactuca sativa HOM05D004984 ORTHO05D006508 2.5e-49 200.7 139 71.9
MBI16_g47408_MAGBIO Magnolia biondii HOM05D004984 ORTHO05D029932 2.6e-38 164.1 209 46.9
BolC3t20704H Brassica oleracea HOM05D004984 ORTHO05D040812 4.5e-35 153.3 150 55.3
C03p84240 Brassica napus HOM05D004984 ORTHO05D040812 7.2e-33 146.0 149 56.4
HanXRQChr14g0429701 Helianthus annuus HOM05D004984 ORTHO05D029932 4.4e-22 110.2 61 90.2
Nn4g23949 Nelumbo nucifera HOM05D004984 ORTHO05D006508 2.0e-11 74.7 56 60.7
MBI19_g01037_MAGBIO Magnolia biondii HOM05D016648 ORTHO05D004199 4.4e-06 57.0 95 40.0


User provided reference genes

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