Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G018500 Carya illinoinensis HOM05D006229 ORTHO05D007190 4.9e-310 1067.0 560 100.0
Cfa004667 Carpinus fangiana HOM05D006229 ORTHO05D007190 6.2e-220 767.7 525 78.7
Haze_10264 Corylus avellana HOM05D006229 ORTHO05D007190 9.3e-208 727.2 525 75.4
Dinv15812 Davidia involucrata HOM05D006229 ORTHO05D007190 6.0e-199 698.0 528 70.6
Atru.chr5.2332 Acer truncatum HOM05D006229 ORTHO05D007190 6.7e-190 667.9 524 68.9
GSVIVG01037817001 Vitis vinifera HOM05D006229 ORTHO05D007190 8.7e-190 667.5 528 68.2
Prupe.8G146100 Prunus persica HOM05D006229 ORTHO05D007190 7.4e-189 664.5 523 68.6
arahy.Tifrunner.gnm1.ann1.U3HZ1H Arachis hypogaea HOM05D006229 ORTHO05D007190 1.6e-183 646.7 517 66.5
Ciclev10027970m.g Citrus clementina HOM05D006229 ORTHO05D007190 2.5e-181 639.4 523 67.7
TWI59G1401 Tripterygium wilfordii HOM05D006229 ORTHO05D007190 4.1e-179 632.1 524 65.6
CSS0000082 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 1.2e-178 630.6 527 64.9
Potri.001G292800 Populus trichocarpa HOM05D006229 ORTHO05D007190 2.0e-178 629.8 524 65.1
Glyma.01G242300 Glycine max HOM05D006229 ORTHO05D007190 3.4e-178 629.0 517 66.7
Thecc.02G118000 Theobroma cacao HOM05D006229 ORTHO05D007190 4.5e-178 628.6 523 64.8
RcHm_v2.0_Chr6g0252731 Rosa chinensis HOM05D006229 ORTHO05D007190 1.7e-177 626.7 555 62.0
CSS0031624 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.2e-177 626.3 527 64.5
Nn1g04542 Nelumbo nucifera HOM05D006229 ORTHO05D007190 2.5e-176 622.9 528 62.1
arahy.Tifrunner.gnm1.ann1.WVEK9H Arachis hypogaea HOM05D006229 ORTHO05D007190 4.2e-176 622.1 496 66.3
CANSAT25G3217 Cannabis sativa HOM05D006229 ORTHO05D007190 9.4e-176 620.9 524 62.4
CANSAT25G2732 Cannabis sativa HOM05D006229 ORTHO05D007190 2.1e-175 619.8 524 62.6
TAR381G1278 Trochodendron aralioides HOM05D006229 ORTHO05D007190 1.4e-174 617.1 530 64.3
FvH4_2g03770 Fragaria vesca HOM05D006229 ORTHO05D007190 1.1e-173 614.0 523 63.5
TAR381G0595 Trochodendron aralioides HOM05D006229 ORTHO05D007190 2.0e-173 613.2 530 64.0
MD05G1101600 Malus domestica HOM05D006229 ORTHO05D007190 1.3e-172 610.5 503 65.6
Lalb_Chr09g0319621 Lupinus albus HOM05D006229 ORTHO05D007190 6.3e-172 608.2 519 64.4
MD10G1106700 Malus domestica HOM05D006229 ORTHO05D007190 8.2e-172 607.8 503 65.4
Actinidia00366 Actinidia chinensis HOM05D006229 ORTHO05D007190 5.3e-171 605.1 528 63.4
Potri.009G087100 Populus trichocarpa HOM05D006229 ORTHO05D007190 1.2e-170 604.0 524 64.1
vmacro01958 Vaccinium macrocarpon HOM05D006229 ORTHO05D007190 1.2e-170 604.0 530 64.0
VMungo1215G0068 Vigna mungo HOM05D006229 ORTHO05D007190 1.7e-169 600.1 518 63.7
Hma1.2p1_0661F.1_g198200 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 2.9e-169 599.4 510 63.9
Ca_24360_v3 Cicer arietinum L. HOM05D006229 ORTHO05D007190 6.5e-169 598.2 524 63.5
Phvul.002G051500 Phaseolus vulgaris HOM05D006229 ORTHO05D007190 7.9e-167 591.3 518 63.5
TPR.G8306 Trifolium pratense HOM05D006229 ORTHO05D007190 1.0e-166 590.9 517 63.4
CsaV3_7G007770 Cucumis sativus L. HOM05D006229 ORTHO05D007190 1.8e-166 590.1 525 62.1
Eucgr.I01054 Eucalyptus grandis HOM05D006229 ORTHO05D007190 5.2e-166 588.6 525 60.8
FAN24G1336 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.5e-165 587.0 582 57.0
Lj5C219G10 Lonicera japonica HOM05D006229 ORTHO05D007190 1.5e-165 587.0 528 61.0
Rhsim11G0152600 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.3e-164 583.9 547 61.2
Gorai.012G147300 Gossypium raimondii HOM05D006229 ORTHO05D007190 2.8e-164 582.8 549 58.3
Gohir.D04G159900 Gossypium hirsutum HOM05D006229 ORTHO05D007190 3.7e-164 582.4 549 58.3
MELO3C018525.2 Cucumis melo HOM05D006229 ORTHO05D007190 7.0e-163 578.2 525 60.8
Sabra09G0066700 Salix brachista HOM05D006229 ORTHO05D007190 5.9e-162 575.1 551 59.5
COL.COLO4_32503 Corchorus olitorius HOM05D006229 ORTHO05D007190 1.2e-159 567.4 489 62.2
Medtr5g005010 Medicago truncatula HOM05D006229 ORTHO05D007190 2.1e-159 566.6 522 60.0
Oeu013795.1 Olea europaea HOM05D006229 ORTHO05D007190 6.1e-159 565.1 538 58.9
Cc02_g19910 Coffea canephora HOM05D006229 ORTHO05D007190 1.5e-157 560.5 534 59.2
Sed0001379 Sechium edule HOM05D006229 ORTHO05D007190 4.1e-155 552.4 516 60.1
Duzib132G1226 Durio zibethinus HOM05D006229 ORTHO05D007190 5.9e-154 548.5 461 65.3
FAN15G0250 Fragaria x ananassa HOM05D006229 ORTHO05D007190 2.9e-153 546.2 664 49.5
Sabra16G0182400 Salix brachista HOM05D006229 ORTHO05D007190 9.4e-152 541.2 450 65.3
Peaxi162Scf00016g02933 Petunia axillaris HOM05D006229 ORTHO05D007190 1.2e-151 540.8 528 56.2
RhsimUnG0124300 Rhododendron simsii HOM05D006229 ORTHO05D007190 1.2e-151 540.8 555 58.0
ClCG02G007070 Citrullus lanatus HOM05D006229 ORTHO05D007190 8.0e-151 538.1 636 50.9
Lj1g0023148 Lotus japonicus HOM05D006229 ORTHO05D007190 1.4e-150 537.3 450 66.2
THA.LOC104807215 Tarenaya hassleriana HOM05D006229 ORTHO05D007190 4.0e-150 535.8 513 58.9
Solyc01g106950.3 Solanum lycopersicum HOM05D006229 ORTHO05D007190 1.5e-149 533.9 527 56.0
Sopen01g049230 Solanum pennellii HOM05D006229 ORTHO05D007190 5.7e-149 531.9 527 56.0
PSO541G3151 Papaver somniferum HOM05D006229 ORTHO05D007190 1.7e-145 520.4 527 56.2
Psat4g227440 Pisum sativum HOM05D006229 ORTHO05D007190 3.8e-145 519.2 479 60.8
Hma1.2p1_0661F.1_g198190 Hydrangea macrophylla HOM05D006229 ORTHO05D007190 5.0e-145 518.8 427 65.8
Aqoxy6G02594 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.9e-144 516.9 533 55.3
AT2G14680 Arabidopsis thaliana HOM05D006229 ORTHO05D007190 2.1e-143 513.5 492 57.7
Actinidia27991 Actinidia chinensis HOM05D006229 ORTHO05D007190 6.1e-143 511.9 475 60.8
Carub.0003s2870 Capsella rubella HOM05D006229 ORTHO05D007190 8.0e-143 511.5 523 55.3
AL3G46380 Arabidopsis lyrata HOM05D006229 ORTHO05D007190 1.4e-142 510.8 496 57.1
Nitab4.5_0011076g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 2.6e-141 506.5 554 52.5
PGR142G3871 Punica granatum HOM05D006229 ORTHO05D007190 2.6e-141 506.5 471 58.4
Nitab4.5_0002040g0030 Nicotiana tabacum HOM05D006229 ORTHO05D007190 7.0e-139 498.4 509 55.0
DCAR_003607 Daucus carota HOM05D006229 ORTHO05D007190 9.2e-139 498.0 533 54.6
Thhalv10022593m.g Eutrema salsugineum HOM05D006229 ORTHO05D007190 2.3e-137 493.4 519 53.6
ECA240G1909 Erigeron canadensis HOM05D006229 ORTHO05D007190 2.9e-137 493.0 553 50.8
BcaB03g16253 Brassica carinata HOM05D006229 ORTHO05D007190 5.0e-137 492.3 560 51.4
A07p05730 Brassica napus HOM05D006229 ORTHO05D007190 1.2e-135 487.6 551 51.2
Sp3g27780 Schrenkiella parvula HOM05D006229 ORTHO05D007190 4.7e-135 485.7 523 53.0
BcaC06g36004 Brassica carinata HOM05D006229 ORTHO05D007190 6.8e-134 481.9 551 50.8
Aa31LG8G12780 Aethionema arabicum HOM05D006229 ORTHO05D007190 2.0e-133 480.3 488 55.5
C07p09110 Brassica napus HOM05D006229 ORTHO05D007190 3.7e-132 476.1 551 50.3
BraA07t28374Z Brassica rapa HOM05D006229 ORTHO05D007190 6.4e-132 475.3 575 49.0
PSO675G2905 Papaver somniferum HOM05D006229 ORTHO05D007190 9.2e-131 471.5 527 52.0
BolC7t41322H Brassica oleracea HOM05D006229 ORTHO05D007190 5.0e-129 465.7 575 48.3
ATR0739G065 Amborella trichopoda HOM05D006229 ORTHO05D007190 8.6e-129 464.9 525 48.8
Lsat_1_v5_gn_9_112861 Lactuca sativa HOM05D006229 ORTHO05D007190 8.9e-126 454.9 532 50.4
SGA_v2.0_scaffold32G12994 Striga asiatica HOM05D006229 ORTHO05D007190 2.2e-124 450.3 529 51.6
Sc18g0007440 Simmondsia chinensis HOM05D006229 ORTHO05D007190 8.1e-119 431.8 541 47.1
CDE01G0760 Ceratophyllum demersum HOM05D006229 ORTHO05D007190 1.3e-116 424.5 527 48.6
HanXRQChr03g0073151 Helianthus annuus HOM05D006229 ORTHO05D007190 7.1e-115 418.7 505 48.3
unitig_46.g18839 Utricularia gibba HOM05D006229 ORTHO05D007190 3.3e-104 383.3 509 47.3
Hund06515 Selenicereus undatus HOM05D006229 ORTHO05D007190 1.2e-101 374.8 562 41.5
HPP92_024894 Vanilla planifolia HOM05D006229 ORTHO05D007190 2.8e-95 353.6 531 42.9
MSTRG.16677 Avicennia marina HOM05D006229 ORTHO05D007190 6.2e-95 352.4 400 52.8
Os03g0431800 Oryza sativa ssp. japonica HOM05D006229 ORTHO05D007190 5.8e-93 345.9 498 44.2
EL10Ac9g22197 Beta vulgaris HOM05D006229 ORTHO05D007190 1.3e-92 344.7 508 42.3
AUR62030848 Chenopodium quinoa HOM05D006229 ORTHO05D007190 4.2e-91 339.7 518 41.1
Cpa.g.sc106.40 Carica papaya HOM05D006229 ORTHO05D007190 2.1e-90 337.4 354 54.5
Ah.01g024640 Amaranthus hybridus HOM05D006229 ORTHO05D007190 1.5e-88 331.3 523 40.7
AUR62027009 Chenopodium quinoa HOM05D006229 ORTHO05D007190 4.0e-86 323.2 509 40.3
Migut.B00486 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.4e-83 314.7 378 50.0
Gohir.A04G118200 Gossypium hirsutum HOM05D006229 ORTHO05D007190 9.6e-80 302.0 331 52.3
Gohir.A04G118150 Gossypium hirsutum HOM05D006229 ORTHO05D007190 8.4e-76 288.9 216 68.1
FAN20G1794 Fragaria x ananassa HOM05D006229 ORTHO05D007190 1.1e-75 288.5 292 55.5
CARHR286390 Cardamine hirsuta HOM05D006229 ORTHO05D007190 1.9e-75 287.7 380 45.5
Zm00001eb404720 Zea mays HOM05D006229 ORTHO05D007190 2.5e-72 277.3 441 41.0
Hund00426 Selenicereus undatus HOM05D006229 ORTHO05D007190 9.4e-67 258.8 720 32.6
Manes.07G057925 Manihot esculenta HOM05D006229 ORTHO05D007190 3.3e-64 250.4 165 78.2
HPP92_024895 Vanilla planifolia HOM05D006229 ORTHO05D007190 4.8e-55 219.9 216 57.9
Sc18g0007400 Simmondsia chinensis HOM05D006229 ORTHO05D007190 4.1e-54 216.9 150 77.3
PGSC0003DMG402025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 5.0e-52 209.9 153 70.6
Aqoxy255s002 Aquilegia oxysepala HOM05D006229 ORTHO05D007190 1.6e-42 178.3 218 48.2
Pp3c7_18650 Physcomitrium patens HOM05D006229 ORTHO05D007190 1.8e-41 174.9 582 28.9
Mapoly0031s0064 Marchantia polymorpha HOM05D006229 ORTHO05D007190 4.4e-40 170.2 509 29.3
Actinidia34359 Actinidia chinensis HOM05D006229 ORTHO05D007190 1.2e-37 162.2 206 51.5
SalBow6G3929 Salvia bowleyana HOM05D006229 ORTHO05D007190 1.6e-34 151.8 211 47.9
Zm00001eb065540 Zea mays HOM05D006229 ORTHO05D007190 6.3e-31 139.8 101 73.3
arahy.Tifrunner.gnm1.ann1.DEY174 Arachis hypogaea HOM05D006229 ORTHO05D007190 3.3e-27 127.5 174 47.1
Duzib248G0077 Durio zibethinus HOM05D006229 ORTHO05D007190 5.2e-25 120.2 145 54.5
Oeu042676.1 Olea europaea HOM05D006229 ORTHO05D007190 2.8e-23 114.4 78 75.6
CSS0042159 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 4.5e-21 107.1 118 58.5
CSS0023758 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 2.3e-20 104.8 127 53.5
CSS0039220 Camellia sinensis var. sinensis HOM05D006229 ORTHO05D007190 8.6e-20 102.8 90 68.9
Sc18g0007390 Simmondsia chinensis HOM05D006229 ORTHO05D007190 2.2e-15 88.2 220 27.7
Migut.B00450 Erythranthe guttata HOM05D006229 ORTHO05D007190 1.2e-13 82.4 52 75.0
CAN.G474.28 Capsicum annuum HOM05D006229 ORTHO05D000001 5.6e-11 73.6 47 76.6
CBR_g17833 Chara braunii HOM05D006229 ORTHO05D007190 1.8e-09 68.6 86 44.2
SEGI_21265 Sequoiadendron giganteum HOM05D006229 ORTHO05D007190 4.0e-09 67.4 47 78.7
PGSC0003DMG403025742 Solanum tuberosum HOM05D006229 ORTHO05D007190 3.7e-07 60.8 73 42.5
CSS0040212 Camellia sinensis var. sinensis HOM05D002352 ORTHO05D007190 8.3e-07 59.7 62 54.8


User provided reference genes

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