Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G017400 Carya illinoinensis HOM05D002122 ORTHO05D002205 6.9e-56 220.3 105 100.0
arahy.Tifrunner.gnm1.ann1.GR60Y1 Arachis hypogaea HOM05D002122 ORTHO05D002205 3.5e-23 111.7 108 52.8
arahy.Tifrunner.gnm1.ann1.8M1QUZ Arachis hypogaea HOM05D002122 ORTHO05D002205 1.3e-22 109.8 108 50.9
Manes.07G058600 Manihot esculenta HOM05D002122 ORTHO05D002205 2.5e-21 105.5 112 47.3
Prupe.8G144300 Prunus persica HOM05D002122 ORTHO05D002205 1.2e-20 103.2 114 52.6
Glyma.01G242700 Glycine max HOM05D002122 ORTHO05D002205 6.1e-20 100.9 106 44.3
RcHm_v2.0_Chr6g0253751 Rosa chinensis HOM05D002122 ORTHO05D002205 8.0e-20 100.5 113 48.7
Dinv42236 Davidia involucrata HOM05D002122 ORTHO05D002205 1.8e-19 99.4 118 47.5
Gohir.A03G182800 Gossypium hirsutum HOM05D002122 ORTHO05D002205 4.0e-19 98.2 98 45.9
GSVIVG01037844001 Vitis vinifera HOM05D000446 ORTHO05D000321 4.0e-19 98.2 116 45.7
Phvul.002G051900 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 8.8e-19 97.1 103 42.7
VMungo1215G2893 Vigna mungo HOM05D002122 ORTHO05D002205 8.8e-19 97.1 104 47.1
FvH4_2g04310 Fragaria vesca HOM05D002122 ORTHO05D002205 1.2e-18 96.7 112 46.4
Gorai.005G231700 Gossypium raimondii HOM05D002122 ORTHO05D002205 1.2e-18 96.7 100 48.0
Thecc.02G116400 Theobroma cacao HOM05D002122 ORTHO05D002205 5.7e-18 94.4 105 41.0
MD10G1105400 Malus domestica HOM05D002122 ORTHO05D002205 9.8e-18 93.6 82 56.1
COL.COLO4_32519 Corchorus olitorius HOM05D002122 ORTHO05D002205 2.8e-17 92.0 108 49.1
Lalb_Chr04g0263751 Lupinus albus HOM05D002122 ORTHO05D002205 8.3e-17 90.5 107 43.0
Gohir.D02G204400 Gossypium hirsutum HOM05D002122 ORTHO05D002205 3.1e-16 88.6 69 56.5
FAN24G2314 Fragaria x ananassa HOM05D002122 ORTHO05D002205 5.4e-16 87.8 100 47.0
Haze_10226 Corylus avellana HOM05D002122 ORTHO05D002205 7.0e-16 87.4 101 47.5
CsaV3_7G007840 Cucumis sativus L. HOM05D002122 ORTHO05D002205 6.1e-12 74.3 60 58.3
VMungo0720G0040 Vigna mungo HOM05D002122 ORTHO05D002205 1.3e-09 66.6 70 48.6
Nitab4.5_0000321g0260 Nicotiana tabacum HOM05D002122 ORTHO05D002205 3.7e-09 65.1 97 40.2
THA.LOC104800783 Tarenaya hassleriana HOM05D002122 ORTHO05D002205 3.7e-09 65.1 81 42.0
Zm00001eb290530 Zea mays HOM05D002122 ORTHO05D002205 1.1e-08 63.5 51 51.0
Os05g0476400 Oryza sativa ssp. japonica HOM05D002122 ORTHO05D002205 1.4e-08 63.2 51 51.0
HPP92_007518 Vanilla planifolia HOM05D002122 ORTHO05D002205 1.4e-08 63.2 62 43.5
Ah.13g071700 Amaranthus hybridus HOM05D002122 ORTHO05D002205 4.1e-08 61.6 54 44.4
PSO339G4000 Papaver somniferum HOM05D002122 ORTHO05D002205 4.1e-08 61.6 70 41.4
vmacro08368 Vaccinium macrocarpon HOM05D002122 ORTHO05D002205 4.1e-08 61.6 57 47.4
unitig_748.g7307 Utricularia gibba HOM05D002122 ORTHO05D002205 5.4e-08 61.2 58 46.6
MSTRG.18542 Avicennia marina HOM05D002122 ORTHO05D002205 7.0e-08 60.8 60 46.7
Phvul.007G061300 Phaseolus vulgaris HOM05D002122 ORTHO05D002205 7.0e-08 60.8 65 44.6
Actinidia11614 Actinidia chinensis HOM05D002122 ORTHO05D002205 1.6e-07 59.7 51 49.0
Duzib052G1138 Durio zibethinus HOM05D002122 ORTHO05D002205 1.6e-07 59.7 57 47.4
CiPaw.02G121400 Carya illinoinensis HOM05D002122 ORTHO05D002205 2.0e-07 59.3 51 45.1
PSO384G2568 Papaver somniferum HOM05D002122 ORTHO05D002205 2.0e-07 59.3 70 40.0
Lalb_Chr17g0345571 Lupinus albus HOM05D002122 ORTHO05D002205 2.7e-07 58.9 51 49.0
CSS0017845 Camellia sinensis var. sinensis HOM05D002122 ORTHO05D002205 3.5e-07 58.5 57 45.6
DCAR_024189 Daucus carota HOM05D002122 ORTHO05D002205 3.5e-07 58.5 57 45.6
Dinv13213 Davidia involucrata HOM05D001149 ORTHO05D000970 3.5e-07 58.5 126 34.9
Lalb_Chr10g0103751 Lupinus albus HOM05D002122 ORTHO05D002205 3.5e-07 58.5 51 49.0
MBI05_g34725_MAGBIO Magnolia biondii HOM05D001149 ORTHO05D000970 3.5e-07 58.5 113 33.6
Zm00001eb149400 Zea mays HOM05D002122 ORTHO05D002205 3.5e-07 58.5 51 45.1
CiPaw.01G195700 Carya illinoinensis HOM05D002122 ORTHO05D002205 4.5e-07 58.2 51 47.1
CAN.G1572.6 Capsicum annuum HOM05D002122 ORTHO05D002205 5.9e-07 57.8 79 36.7
Nitab4.5_0005051g0010 Nicotiana tabacum HOM05D002122 ORTHO05D002205 5.9e-07 57.8 51 47.1
Solyc09g082620.3 Solanum lycopersicum HOM05D002122 ORTHO05D002205 5.9e-07 57.8 51 47.1
Sopen09g031470 Solanum pennellii HOM05D002122 ORTHO05D002205 5.9e-07 57.8 51 47.1
vmacro18588 Vaccinium macrocarpon HOM05D001149 ORTHO05D000970 5.9e-07 57.8 136 30.9
Peaxi162Scf00316g00075 Petunia axillaris HOM05D002122 ORTHO05D002205 7.7e-07 57.4 99 34.3
Rhsim08G0012500 Rhododendron simsii HOM05D001149 ORTHO05D000970 7.7e-07 57.4 131 30.5
HPP92_011983 Vanilla planifolia HOM05D002122 ORTHO05D002205 7.7e-07 57.4 50 44.0
BcaB01g04110 Brassica carinata HOM05D002122 ORTHO05D002205 1.0e-06 57.0 55 45.5
DCAR_027242 Daucus carota HOM05D002122 ORTHO05D002205 1.0e-06 57.0 61 42.6
Nitab4.5_0000090g0330 Nicotiana tabacum HOM05D002122 ORTHO05D002205 1.0e-06 57.0 101 34.7
Sc03g0000050 Simmondsia chinensis HOM05D001149 ORTHO05D000970 1.0e-06 57.0 111 33.3
PGSC0003DMG400006451 Solanum tuberosum HOM05D002122 ORTHO05D002205 1.0e-06 57.0 79 39.2
AT1G80133 Arabidopsis thaliana HOM05D004379 ORTHO05D005186 1.3e-06 56.6 70 40.0
BcaC01g05992 Brassica carinata HOM05D002122 ORTHO05D002205 1.3e-06 56.6 55 47.3
C03p20020 Brassica napus HOM05D002122 ORTHO05D002205 1.3e-06 56.6 55 47.3
BolC3t14379H Brassica oleracea HOM05D002122 ORTHO05D002205 1.3e-06 56.6 55 47.3
Potri.019G128200 Populus trichocarpa HOM05D002122 ORTHO05D002205 1.3e-06 56.6 51 45.1
CiPaw.13G065300 Carya illinoinensis HOM05D002122 ORTHO05D002205 1.7e-06 56.2 69 42.0
Ciclev10027218m.g Citrus clementina HOM05D001149 ORTHO05D000970 1.7e-06 56.2 114 33.3
Duzib168G0418 Durio zibethinus HOM05D002122 ORTHO05D002205 1.7e-06 56.2 51 47.1
Hma1.2p1_0602F.1_g187580 Hydrangea macrophylla HOM05D002122 ORTHO05D002205 1.7e-06 56.2 58 46.6
Pp3c6_12270 Physcomitrium patens HOM05D002122 ORTHO05D002205 1.7e-06 56.2 59 44.1
QL06p001148 Quercus lobata HOM05D002122 ORTHO05D002205 1.7e-06 56.2 54 40.7
Thecc.09G362100 Theobroma cacao HOM05D002122 ORTHO05D002205 1.7e-06 56.2 51 47.1
CDE07G0841 Ceratophyllum demersum HOM05D002122 ORTHO05D002205 2.3e-06 55.8 51 41.2
Duzib264G0507 Durio zibethinus HOM05D001149 ORTHO05D000970 2.3e-06 55.8 108 34.3
Pp3c1_26030 Physcomitrium patens HOM05D002122 ORTHO05D002205 2.3e-06 55.8 59 42.4
Pp3c5_11260 Physcomitrium patens HOM05D002122 ORTHO05D002205 2.3e-06 55.8 53 45.3
AL2G41390 Arabidopsis lyrata HOM05D004379 ORTHO05D005186 2.9e-06 55.5 70 40.0
Cfa020793 Carpinus fangiana HOM05D002122 ORTHO05D002205 2.9e-06 55.5 60 43.3
Pp3c23_5720 Physcomitrium patens HOM05D002122 ORTHO05D002205 2.9e-06 55.5 68 41.2
Pp3c2_13490 Physcomitrium patens HOM05D002122 ORTHO05D002205 2.9e-06 55.5 81 35.8
DCAR_014889 Daucus carota HOM05D004379 ORTHO05D005186 3.8e-06 55.1 62 40.3
Pp3c16_1430 Physcomitrium patens HOM05D002122 ORTHO05D002205 3.8e-06 55.1 59 42.4
Sabra08G0119800 Salix brachista HOM05D002122 ORTHO05D002205 3.8e-06 55.1 66 37.9
SHI19253 Sapria himalayana HOM05D002122 ORTHO05D002205 3.8e-06 55.1 51 45.1
Glyma.11G160600 Glycine max HOM05D002122 ORTHO05D002205 5.0e-06 54.7 51 47.1
Glyma.18G054500 Glycine max HOM05D002122 ORTHO05D002205 5.0e-06 54.7 51 47.1
Nn6g34157 Nelumbo nucifera HOM05D002122 ORTHO05D002205 5.0e-06 54.7 57 42.1
Nitab4.5_0006708g0030 Nicotiana tabacum HOM05D004379 ORTHO05D005186 5.0e-06 54.7 107 34.6
Nitab4.5_0009388g0010 Nicotiana tabacum HOM05D001149 ORTHO05D000970 5.0e-06 54.7 55 43.6
Os11g0581700 Oryza sativa ssp. japonica HOM05D002122 ORTHO05D002205 5.0e-06 54.7 51 43.1
BcaB05g21475 Brassica carinata HOM05D001149 ORTHO05D000970 6.6e-06 54.3 113 28.3
CAN.G181.9 Capsicum annuum HOM05D002122 ORTHO05D002205 6.6e-06 54.3 51 45.1
Actinidia28855 Actinidia chinensis HOM05D001149 ORTHO05D000970 8.6e-06 53.9 77 37.7
Lj6g0013605 Lotus japonicus HOM05D001149 ORTHO05D000970 8.6e-06 53.9 124 32.3
Peaxi162Scf00785g00321 Petunia axillaris HOM05D004379 ORTHO05D005186 8.6e-06 53.9 63 38.1
TWI73G0325 Tripterygium wilfordii HOM05D002122 ORTHO05D002205 8.6e-06 53.9 57 40.4


User provided reference genes

Program Settings