Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.4e-246 853.6 418 100.0
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 1.1e-234 816.2 418 95.7
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 4.3e-218 761.1 417 87.5
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 9.6e-218 760.0 417 87.8
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 4.2e-213 744.6 437 83.3
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.9e-210 735.7 416 84.4
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 2.0e-207 725.7 417 82.5
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.4e-207 724.9 412 83.3
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 1.0e-206 723.4 417 82.3
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.9e-206 721.8 417 82.3
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 5.0e-206 721.1 412 82.5
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 1.1e-205 719.9 418 82.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 2.5e-205 718.8 415 81.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 4.2e-205 718.0 412 83.0
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.2e-205 717.2 417 81.8
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 7.2e-205 717.2 416 82.0
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 6.1e-204 714.1 415 81.9
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 1.8e-203 712.6 414 80.7
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-203 712.2 418 81.1
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 3.9e-203 711.4 414 81.2
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.1e-203 711.1 416 80.5
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 5.1e-203 711.1 415 80.2
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 6.7e-203 710.7 412 81.8
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 8.8e-203 710.3 416 80.8
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 2.0e-202 709.1 416 80.3
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 4.3e-202 708.0 418 79.7
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 5.7e-202 707.6 415 81.2
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 7.4e-202 707.2 412 80.6
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 1.7e-201 706.1 418 79.7
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.2e-201 705.7 414 80.2
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 3.7e-201 704.9 437 78.0
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 3.7e-201 704.9 417 80.3
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 1.1e-200 703.4 416 79.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.4e-200 703.0 415 80.5
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 3.1e-200 701.8 417 78.9
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 4.1e-200 701.4 416 79.1
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 6.9e-200 700.7 417 79.4
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 9.1e-200 700.3 417 80.1
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 1.2e-199 699.9 416 79.3
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 1.5e-199 699.5 416 79.3
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.6e-199 698.7 417 79.9
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 2.6e-199 698.7 415 80.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.6e-199 698.7 417 80.1
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 1.0e-198 696.8 418 78.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.7e-198 696.0 414 80.7
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 8.5e-198 693.7 417 79.1
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 8.5e-198 693.7 417 79.6
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.1e-197 693.3 416 78.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 1.1e-197 693.3 419 78.5
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 1.4e-197 693.0 416 79.1
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 3.2e-197 691.8 417 79.6
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.2e-197 691.8 414 80.2
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 4.2e-197 691.4 412 79.9
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 4.2e-197 691.4 417 79.1
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 7.2e-197 690.6 429 77.9
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.2e-196 689.9 417 78.9
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 2.1e-196 689.1 412 79.6
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.7e-196 688.7 417 77.5
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.7e-196 688.7 412 79.1
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.7e-196 688.7 416 79.6
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 6.1e-196 687.6 416 77.4
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.8e-195 686.0 432 76.4
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.3e-195 685.6 417 77.7
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 6.7e-195 684.1 412 78.6
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 6.7e-195 684.1 416 78.6
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 8.8e-195 683.7 416 77.4
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 8.8e-195 683.7 433 76.9
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 1.1e-194 683.3 412 77.9
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 1.5e-194 682.9 412 77.9
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 4.4e-194 681.4 416 77.2
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.4e-194 681.4 433 76.7
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 7.4e-194 680.6 416 77.2
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 7.4e-194 680.6 417 77.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 9.7e-194 680.2 416 77.2
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 9.7e-194 680.2 415 77.6
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 2.2e-193 679.1 415 77.6
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 2.2e-193 679.1 416 77.2
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.8e-193 678.7 414 77.5
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 3.7e-193 678.3 412 77.7
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.8e-193 677.9 426 76.8
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 1.1e-192 676.8 416 76.9
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 1.1e-192 676.8 411 77.4
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 1.4e-192 676.4 433 76.2
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 76.7
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 3.1e-192 675.2 418 75.4
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 3.1e-192 675.2 416 75.7
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 5.3e-192 674.5 417 76.0
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 9.1e-192 673.7 414 77.3
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 1.6e-191 672.9 410 76.8
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.6e-191 672.9 412 76.5
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 2.6e-191 672.2 416 76.9
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 2.6e-191 672.2 413 76.8
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 2.6e-191 672.2 416 77.4
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 3.5e-191 671.8 417 76.0
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 1.3e-190 669.8 417 76.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 1.7e-190 669.5 418 76.3
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 5.0e-190 667.9 449 72.2
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 1.1e-189 666.8 416 75.0
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.2e-189 664.8 417 75.5
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 5.5e-189 664.5 416 75.7
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 1.6e-188 662.9 416 75.7
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.6e-188 662.9 415 77.1
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.6e-188 661.8 411 74.0
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.0e-187 660.2 412 75.2
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 8.8e-187 657.1 412 76.0
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.5e-186 656.4 406 78.1
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 1.5e-186 656.4 452 70.1
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 5.7e-186 654.4 416 75.2
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 5.7e-186 654.4 407 75.2
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.7e-185 652.9 421 73.6
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 1.1e-184 650.2 415 74.0
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 5.3e-184 647.9 412 76.7
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 5.3e-184 647.9 416 75.5
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 2.7e-183 645.6 411 74.0
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 7.7e-183 644.0 422 73.7
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 9.4e-181 637.1 406 73.6
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 4.7e-180 634.8 410 72.0
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 6.1e-180 634.4 364 82.7
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 1.4e-179 633.3 423 69.5
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 8.8e-179 630.6 412 71.6
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 2.8e-177 625.5 412 70.4
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 3.7e-177 625.2 415 72.0
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 4.8e-177 624.8 415 70.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 6.3e-177 624.4 369 78.6
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 6.3e-177 624.4 498 62.0
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.3e-177 624.0 407 72.5
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 2.4e-176 622.5 411 72.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.7e-175 619.0 412 72.8
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 6.5e-174 614.4 412 73.1
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.1e-173 613.6 363 78.8
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 8.3e-169 597.4 411 68.4
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 1.8e-168 596.3 360 78.1
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 8.0e-164 580.9 416 69.2
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 5.7e-162 574.7 343 78.4
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 8.3e-161 570.9 341 78.3
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 2.3e-155 552.7 414 62.1
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.4e-153 544.7 429 65.0
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 8.6e-150 534.3 412 60.0
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-148 530.4 413 62.5
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 4.0e-147 525.4 411 60.1
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 1.7e-145 520.0 410 60.2
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 6.4e-145 518.1 301 82.4
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.1e-136 488.8 340 68.5
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 3.3e-133 479.2 427 55.0
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.4e-131 473.0 302 78.5
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.4e-130 468.8 317 72.2
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 2.2e-113 413.3 223 86.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 1.5e-109 400.6 284 68.7
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 2.9e-105 386.3 235 77.0
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.4e-104 384.0 416 47.4
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 2.3e-102 376.7 498 41.0
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 2.5e-101 373.2 406 47.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 8.2e-100 368.2 246 69.9
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 2.2e-97 360.1 421 45.1
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 1.4e-96 357.5 198 83.8
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.1e-95 352.1 198 82.3
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 3.6e-79 299.7 221 67.0
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 8.2e-76 288.5 226 65.9
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 2.8e-68 263.5 258 55.8
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.2e-66 258.1 174 70.1
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-62 245.0 162 73.5
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 1.8e-62 244.2 157 73.9
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.5e-61 238.8 178 66.9
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 1.2e-58 231.5 127 87.4
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 5.9e-58 229.2 151 72.2
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 2.8e-55 220.3 229 51.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 3.4e-53 213.4 119 80.7
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 6.3e-52 209.1 181 60.2
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 6.3e-52 209.1 121 75.2
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.8e-49 199.9 336 38.1
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 2.3e-46 190.7 342 38.0
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.5e-45 188.0 127 71.7
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-40 171.8 122 64.8
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 9.2e-35 152.1 95 75.8
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 8.9e-30 135.6 89 75.3
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 7.5e-29 132.5 125 56.0
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.5e-26 123.6 101 58.4
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 1.5e-24 118.2 71 74.6
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 3.0e-17 94.0 87 49.4
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.5e-16 91.7 87 49.4
Aqoxy6G02846 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 4.7e-15 86.7 57 68.4
ATR0589G078 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.9e-11 74.7 59 67.8
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 4.3e-08 63.5 35 80.0
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.8e-07 60.8 136 31.6
BcaC08g43052 Brassica carinata HOM05D003735 ORTHO05D004550 6.2e-07 59.7 50 56.0


User provided reference genes

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