Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G001600 Carya illinoinensis HOM05D006009 ORTHO05D007389 0.0e+00 1302.0 722 100.0
Cfa004445 Carpinus fangiana HOM05D006009 ORTHO05D007389 0.0e+00 1095.1 722 84.2
QL02p103325 Quercus lobata HOM05D006009 ORTHO05D007389 0.0e+00 1083.9 723 82.6
Haze_09985 Corylus avellana HOM05D006009 ORTHO05D007389 2.5e-306 1055.0 809 74.9
Thecc.06G017900 Theobroma cacao HOM05D006009 ORTHO05D007389 1.1e-288 996.5 727 76.3
Dinv29632 Davidia involucrata HOM05D006009 ORTHO05D007389 2.2e-286 988.8 722 76.7
Duzib160G0440 Durio zibethinus HOM05D006009 ORTHO05D007389 1.2e-284 983.0 726 76.3
Atru.chr6.240 Acer truncatum HOM05D006009 ORTHO05D007389 7.3e-282 973.8 728 75.7
CSS0016468 Camellia sinensis var. sinensis HOM05D006009 ORTHO05D007389 1.6e-276 956.1 726 73.3
RcHm_v2.0_Chr7g0219751 Rosa chinensis HOM05D006009 ORTHO05D007389 3.5e-276 954.9 726 74.2
Potri.003G000900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.0e-271 939.1 729 73.0
Sabra03G0000300 Salix brachista HOM05D006009 ORTHO05D007389 2.6e-271 938.7 729 73.3
Manes.10G106700 Manihot esculenta HOM05D006009 ORTHO05D007389 2.2e-270 935.6 724 73.1
MD08G1248100 Malus domestica HOM05D006009 ORTHO05D007389 1.9e-269 932.6 725 74.5
FvH4_5g27851 Fragaria vesca HOM05D006009 ORTHO05D007389 3.2e-269 931.8 726 72.5
TWI59G1011 Tripterygium wilfordii HOM05D006009 ORTHO05D007389 2.3e-267 925.6 692 73.7
Ciclev10000419m.g Citrus clementina HOM05D006009 ORTHO05D007389 1.1e-266 923.3 725 72.4
COL.COLO4_31132 Corchorus olitorius HOM05D006009 ORTHO05D007389 8.2e-265 917.1 697 73.6
MD15G1442900 Malus domestica HOM05D006009 ORTHO05D007389 8.2e-265 917.1 725 73.4
Ca_13530_v3 Cicer arietinum L. HOM05D006009 ORTHO05D007389 6.9e-264 914.1 722 71.2
Gohir.D06G150100 Gossypium hirsutum HOM05D006009 ORTHO05D007389 2.0e-263 912.5 728 71.8
CsaV3_5G037180 Cucumis sativus L. HOM05D006009 ORTHO05D007389 6.5e-262 907.5 728 70.6
Prupe.1G585300 Prunus persica HOM05D006009 ORTHO05D007389 6.5e-262 907.5 672 77.2
MELO3C022930.2 Cucumis melo HOM05D006009 ORTHO05D007389 1.4e-261 906.4 728 70.6
Actinidia00150 Actinidia chinensis HOM05D006009 ORTHO05D007389 3.2e-261 905.2 722 70.6
Gorai.010G175200 Gossypium raimondii HOM05D006009 ORTHO05D007389 7.9e-260 900.6 729 71.5
PGR142G3497 Punica granatum HOM05D006009 ORTHO05D007389 7.9e-260 900.6 728 70.3
TPR.G5949 Trifolium pratense HOM05D006009 ORTHO05D007389 1.3e-259 899.8 722 70.5
Solyc01g103040.4 Solanum lycopersicum HOM05D006009 ORTHO05D007389 3.0e-259 898.7 723 69.3
ClCG11G000290 Citrullus lanatus HOM05D006009 ORTHO05D007389 3.9e-259 898.3 728 70.6
Hma1.2p1_0052F.1_g030000 Hydrangea macrophylla HOM05D006009 ORTHO05D007389 2.2e-257 892.5 703 71.8
arahy.Tifrunner.gnm1.ann1.AUD1A6 Arachis hypogaea HOM05D006009 ORTHO05D007389 2.8e-257 892.1 725 69.4
Rhsim11G0117900 Rhododendron simsii HOM05D006009 ORTHO05D007389 4.8e-257 891.3 751 68.3
arahy.Tifrunner.gnm1.ann1.WHZ4K1 Arachis hypogaea HOM05D006009 ORTHO05D007389 8.2e-257 890.6 725 69.1
Eucgr.I02796 Eucalyptus grandis HOM05D006009 ORTHO05D007389 1.5e-255 886.3 725 69.8
Nitab4.5_0002261g0040 Nicotiana tabacum HOM05D006009 ORTHO05D007389 3.4e-255 885.2 727 68.8
Psat4g001000 Pisum sativum HOM05D006009 ORTHO05D007389 6.5e-254 880.9 724 68.9
Lj4g0014586 Lotus japonicus HOM05D006009 ORTHO05D007389 1.6e-252 876.3 722 69.1
Medtr4g134640 Medicago truncatula HOM05D006009 ORTHO05D007389 6.1e-252 874.4 723 68.3
TAR628G0644 Trochodendron aralioides HOM05D006009 ORTHO05D007389 6.1e-252 874.4 724 70.4
Nitab4.5_0005110g0010 Nicotiana tabacum HOM05D006009 ORTHO05D007389 1.8e-251 872.8 745 67.1
Glyma.17G001700 Glycine max HOM05D006009 ORTHO05D007389 4.3e-250 868.2 722 69.1
Sopen01g045450 Solanum pennellii HOM05D006009 ORTHO05D007389 7.4e-250 867.5 723 67.8
Lalb_Chr12g0195841 Lupinus albus HOM05D006009 ORTHO05D007389 1.7e-249 866.3 722 67.7
CARHR258850 Cardamine hirsuta HOM05D006009 ORTHO05D007389 5.3e-248 861.3 723 67.1
Peaxi162Scf00011g01924 Petunia axillaris HOM05D006009 ORTHO05D007389 2.6e-247 859.0 727 67.7
Cc02_g23590 Coffea canephora HOM05D006009 ORTHO05D007389 7.7e-247 857.4 729 66.8
THA.LOC104806651 Tarenaya hassleriana HOM05D006009 ORTHO05D007389 7.7e-247 857.4 730 66.7
Sp6g11340 Schrenkiella parvula HOM05D006009 ORTHO05D007389 2.5e-245 852.4 724 66.6
Lsat_1_v5_gn_5_104280 Lactuca sativa HOM05D006009 ORTHO05D007389 1.6e-244 849.7 723 66.9
Thhalv10012797m.g Eutrema salsugineum HOM05D006009 ORTHO05D007389 4.7e-244 848.2 724 65.9
AL8G23820 Arabidopsis lyrata HOM05D006009 ORTHO05D007389 8.8e-243 844.0 725 65.1
SGA_v2.0_scaffold131G34411 Striga asiatica HOM05D006009 ORTHO05D007389 1.5e-242 843.2 732 65.6
Phvul.003G076200 Phaseolus vulgaris HOM05D006009 ORTHO05D007389 5.7e-242 841.3 695 68.9
BcaB08g35360 Brassica carinata HOM05D006009 ORTHO05D007389 3.7e-241 838.6 723 66.0
AT5G49880 Arabidopsis thaliana HOM05D006009 ORTHO05D007389 5.3e-240 834.7 725 64.6
FAN08G0569 Fragaria x ananassa HOM05D006009 ORTHO05D007389 5.3e-240 834.7 797 63.6
Sc03g0005770 Simmondsia chinensis HOM05D006009 ORTHO05D007389 3.4e-239 832.0 724 65.2
BraSC37t46134Z Brassica rapa HOM05D006009 ORTHO05D007389 5.9e-239 831.2 725 66.1
Carub.0008s0974 Capsella rubella HOM05D006009 ORTHO05D007389 1.1e-237 827.0 724 64.5
Glyma.07G272700 Glycine max HOM05D006009 ORTHO05D007389 4.2e-237 825.1 693 68.3
HanXRQChr10g0301411 Helianthus annuus HOM05D006009 ORTHO05D007389 5.5e-237 824.7 722 65.7
A10p08680 Brassica napus HOM05D006009 ORTHO05D007389 1.0e-235 820.5 725 65.4
MSTRG.16468 Avicennia marina HOM05D006009 ORTHO05D007389 2.3e-235 819.3 701 67.2
Migut.B00722 Erythranthe guttata HOM05D006009 ORTHO05D007389 3.0e-235 818.9 733 64.0
vmacro01680 Vaccinium macrocarpon HOM05D006009 ORTHO05D007389 9.7e-234 813.9 811 61.0
Potri.004G228900 Populus trichocarpa HOM05D006009 ORTHO05D007389 2.2e-233 812.8 728 66.6
MBI03_g05191_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 4.1e-232 808.5 728 64.8
BcaC04g20834 Brassica carinata HOM05D006009 ORTHO05D007389 9.1e-232 807.4 723 64.5
ECA234G2369 Erigeron canadensis HOM05D006009 ORTHO05D007389 2.2e-230 802.7 711 65.0
PSO017G1873 Papaver somniferum HOM05D006009 ORTHO05D007389 8.5e-230 800.8 726 64.0
C09p38660 Brassica napus HOM05D006009 ORTHO05D007389 4.2e-229 798.5 725 64.3
BolC9t56722H Brassica oleracea HOM05D006009 ORTHO05D007389 4.2e-229 798.5 725 64.3
Aqoxy6G00035 Aquilegia oxysepala HOM05D006009 ORTHO05D007389 3.1e-224 782.3 742 61.3
Gohir.A06G144400 Gossypium hirsutum HOM05D006009 ORTHO05D007389 3.1e-224 782.3 728 65.0
FAN04G2183 Fragaria x ananassa HOM05D006009 ORTHO05D007389 2.0e-223 779.6 667 69.1
Aa31sc62G20 Aethionema arabicum HOM05D006009 ORTHO05D007389 4.7e-220 768.5 721 61.6
DCAR_001725 Daucus carota HOM05D006009 ORTHO05D007389 2.0e-218 763.1 693 63.3
Lj5C283T7 Lonicera japonica HOM05D006009 ORTHO05D007389 5.7e-218 761.5 719 62.9
Nn5g27199 Nelumbo nucifera HOM05D006009 ORTHO05D007389 2.3e-214 749.6 729 63.1
Ah.03g136790 Amaranthus hybridus HOM05D006009 ORTHO05D007389 2.4e-208 729.6 724 60.2
AUR62042641 Chenopodium quinoa HOM05D006009 ORTHO05D007389 7.0e-208 728.0 747 58.4
PSO170G2218 Papaver somniferum HOM05D006009 ORTHO05D007389 1.0e-206 724.2 698 61.3
unitig_8.g4550 Utricularia gibba HOM05D006009 ORTHO05D007389 1.5e-205 720.3 673 62.0
AUR62032470 Chenopodium quinoa HOM05D006009 ORTHO05D007389 4.0e-195 685.6 724 56.6
EL10Ac6g13997 Beta vulgaris HOM05D006009 ORTHO05D007389 2.0e-194 683.3 776 54.5
ATR1089G153 Amborella trichopoda HOM05D006009 ORTHO05D007389 8.6e-190 667.9 730 55.6
Oeu043610.2 Olea europaea HOM05D006009 ORTHO05D007389 8.6e-190 667.9 674 59.2
CANSAT01G0444 Cannabis sativa HOM05D006009 ORTHO05D007389 5.6e-181 638.6 594 65.2
Os01g0877300 Oryza sativa ssp. japonica HOM05D006009 ORTHO05D007389 1.8e-179 633.6 729 52.3
HPP92_003614 Vanilla planifolia HOM05D006009 ORTHO05D007389 4.7e-172 609.0 725 52.0
CDE05G2940 Ceratophyllum demersum HOM05D006009 ORTHO05D007389 2.0e-162 577.0 577 58.9
FAN18G4220 Fragaria x ananassa HOM05D006009 ORTHO05D007389 1.5e-154 550.8 554 61.0
Sed0013076 Sechium edule HOM05D006009 ORTHO05D007389 4.3e-149 532.7 583 56.6
Cpa.g.sc173.18 Carica papaya HOM05D006009 ORTHO05D007389 6.9e-147 525.4 359 80.2
CAN.G855.52 Capsicum annuum HOM05D006009 ORTHO05D007389 4.1e-139 499.6 363 74.4
Manes.10G107000 Manihot esculenta HOM05D006009 ORTHO05D007389 4.1e-139 499.6 425 68.7
GSVIVG01023147001 Vitis vinifera HOM05D006009 ORTHO05D007389 5.9e-130 469.2 299 81.6
GSVIVG01023148001 Vitis vinifera HOM05D006009 ORTHO05D007389 3.2e-128 463.4 425 66.8
Oeu028479.1 Olea europaea HOM05D006009 ORTHO05D007389 1.8e-115 421.0 271 81.5
CAN.G855.51 Capsicum annuum HOM05D006009 ORTHO05D007389 3.5e-106 390.2 371 60.6
Pp3c17_20400 Physcomitrium patens HOM05D006009 ORTHO05D007389 6.6e-89 332.8 689 35.4
Sabra01G0173900 Salix brachista HOM05D006009 ORTHO05D007389 6.6e-89 332.8 502 49.2
ECA234G2367 Erigeron canadensis HOM05D000005 ORTHO05D000012 2.2e-84 317.8 344 57.6
Zm00001eb145920 Zea mays HOM05D006009 ORTHO05D007389 1.2e-82 312.0 443 47.9
AagrBONN_evm.TU.Sc2ySwM_228.1218 Anthoceros agrestis HOM05D006009 ORTHO05D007389 3.3e-80 303.9 673 34.6
Mapoly0034s0031 Marchantia polymorpha HOM05D006009 ORTHO05D007389 5.2e-78 296.6 666 32.3
Oeu028480.1 Olea europaea HOM05D006009 ORTHO05D007389 7.5e-77 292.7 272 62.9
Cpa.g.sc173.20 Carica papaya HOM05D006009 ORTHO05D007389 4.9e-76 290.0 371 52.6
SHI05061 Sapria himalayana HOM05D000030 ORTHO05D000009 1.9e-72 278.1 457 46.0
CBR_g38734 Chara braunii HOM05D006009 ORTHO05D007389 1.5e-69 268.5 715 30.6
SMO343G0014 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 1.6e-66 258.5 697 30.0
Eucgr.D02407 Eucalyptus grandis HOM05D006009 ORTHO05D007389 2.3e-41 174.9 136 72.8
SEGI_34522 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 2.7e-26 124.8 84 71.4
Psat6g226760 Pisum sativum HOM05D003335 ORTHO05D003853 2.3e-25 121.7 121 57.9
PRCOL_00003389 Prasinoderma coloniale HOM05D006009 ORTHO05D007389 5.1e-25 120.6 503 25.2
SEGI_19376 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 8.2e-23 113.2 110 55.5
Hund15371 Selenicereus undatus HOM05D006009 ORTHO05D007389 1.4e-19 102.4 202 43.1
SEGI_26370 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 1.2e-18 99.4 124 46.8
GSVIVG01023072001 Vitis vinifera HOM05D001300 ORTHO05D014438 2.1e-18 98.6 94 58.5
SEGI_01187 Sequoiadendron giganteum HOM05D006009 ORTHO05D007389 6.1e-18 97.1 154 41.6
Glyma.14G105500 Glycine max HOM05D006009 ORTHO05D007389 1.0e-17 96.3 70 71.4
QL08p014094 Quercus lobata HOM05D006009 ORTHO05D007389 1.4e-17 95.9 95 55.8
MBI06_g11892_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D004199 5.1e-17 94.0 105 56.2
MBI18_g16980_MAGBIO Magnolia biondii HOM05D005644 ORTHO05D007092 3.3e-16 91.3 55 87.3
SMO343G0089 Selaginella moellendorffii HOM05D006009 ORTHO05D007389 3.7e-15 87.8 246 32.1
Oeu028483.1 Olea europaea HOM05D006009 ORTHO05D007389 6.3e-15 87.0 98 50.0
MCO13G251 Micromonas commoda HOM05D006009 ORTHO05D007389 3.1e-14 84.7 118 39.8
MBI18_g20174_MAGBIO Magnolia biondii HOM05D006009 ORTHO05D007389 3.4e-13 81.3 68 63.2
Zm00001eb351220 Zea mays HOM05D006009 ORTHO05D007389 4.2e-11 74.3 57 64.9
MD15G1442500 Malus domestica HOM05D006009 ORTHO05D007389 5.1e-09 67.4 38 81.6
RhsimUnG0219700 Rhododendron simsii HOM05D006009 ORTHO05D007389 1.3e-07 62.8 41 78.0


User provided reference genes

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