Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.05G001100 Carya illinoinensis HOM05D002380 ORTHO05D006960 0.0e+00 2178.7 1094 100.0
Cfa004427 Carpinus fangiana HOM05D002380 ORTHO05D006960 0.0e+00 1892.1 1094 86.0
QL02p103637 Quercus lobata HOM05D002380 ORTHO05D006960 0.0e+00 1868.2 1088 85.3
Prupe.1G586400 Prunus persica HOM05D002380 ORTHO05D006960 0.0e+00 1798.9 1091 82.3
RcHm_v2.0_Chr7g0218921 Rosa chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1781.9 1091 81.4
FvH4_5g27550 Fragaria vesca HOM05D002380 ORTHO05D006960 0.0e+00 1768.8 1091 80.8
MD08G1249200 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1756.5 1091 80.6
MD15G1443800 Malus domestica HOM05D002380 ORTHO05D006960 0.0e+00 1752.3 1087 80.3
Manes.10G105800 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1752.3 1089 79.4
TWI23G0559 Tripterygium wilfordii HOM05D002380 ORTHO05D006960 0.0e+00 1751.9 1092 79.6
GSVIVG01023133001 Vitis vinifera HOM05D002380 ORTHO05D006960 0.0e+00 1749.9 1088 79.9
Manes.07G031400 Manihot esculenta HOM05D002380 ORTHO05D006960 0.0e+00 1749.2 1091 79.7
TAR381G0848 Trochodendron aralioides HOM05D002380 ORTHO05D006960 0.0e+00 1742.6 1088 79.5
Dinv29639 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1741.9 1091 80.0
Hma1.2p1_3305F.1_g335100 Hydrangea macrophylla HOM05D002380 ORTHO05D006960 0.0e+00 1736.1 1088 79.2
CANSAT01G1628 Cannabis sativa HOM05D002380 ORTHO05D006960 0.0e+00 1726.5 1091 78.6
Cpa.g.sc173.3 Carica papaya HOM05D002380 ORTHO05D006960 0.0e+00 1726.1 1091 78.1
Potri.004G229800 Populus trichocarpa HOM05D002380 ORTHO05D006960 0.0e+00 1724.9 1094 78.4
ClCG10G007520 Citrullus lanatus HOM05D002380 ORTHO05D006960 0.0e+00 1719.5 1085 78.1
Eucgr.G00060 Eucalyptus grandis HOM05D002380 ORTHO05D006960 0.0e+00 1718.7 1101 76.9
Ciclev10000109m.g Citrus clementina HOM05D002380 ORTHO05D006960 0.0e+00 1718.0 1072 79.6
Thecc.06G020600 Theobroma cacao HOM05D002380 ORTHO05D006960 0.0e+00 1716.0 1091 79.3
CSS0006349 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1713.4 1091 77.4
Rhsim11G0117400 Rhododendron simsii HOM05D002380 ORTHO05D006960 0.0e+00 1711.8 1093 77.2
Medtr2g005110 Medicago truncatula HOM05D002380 ORTHO05D006960 0.0e+00 1710.7 1087 78.2
Ca_00015_v3 Cicer arietinum L. HOM05D002380 ORTHO05D006960 0.0e+00 1708.7 1087 77.6
TPR.G5956 Trifolium pratense HOM05D002380 ORTHO05D006960 0.0e+00 1706.8 1087 77.8
FAN18G1053 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1706.4 1173 74.5
CSS0029934 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1703.7 1092 77.3
Atru.chr6.195 Acer truncatum HOM05D002380 ORTHO05D006960 0.0e+00 1703.3 1095 78.4
CSS0043519 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D006960 0.0e+00 1701.0 1092 77.3
FAN13G2214 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1697.9 1173 74.3
Phvul.006G221800 Phaseolus vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1697.2 1088 77.2
CsaV3_3G006730 Cucumis sativus L. HOM05D002380 ORTHO05D006960 0.0e+00 1696.4 1085 77.2
MELO3C016448.2 Cucumis melo HOM05D002380 ORTHO05D006960 0.0e+00 1692.2 1085 77.2
Psat1g223680 Pisum sativum HOM05D002380 ORTHO05D006960 0.0e+00 1691.8 1087 76.8
Sed0016889 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1690.6 1085 77.7
Glyma.12G163700 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1689.5 1088 76.6
Gohir.D05G109900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1687.2 1092 77.4
Sed0014048 Sechium edule HOM05D002380 ORTHO05D006960 0.0e+00 1686.4 1091 76.4
Gorai.009G114000 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1684.5 1090 77.3
VMungo0540G1526 Vigna mungo HOM05D002380 ORTHO05D006960 0.0e+00 1683.3 1087 76.4
Glyma.16G000200 Glycine max HOM05D002380 ORTHO05D006960 0.0e+00 1680.2 1088 76.2
Sabra01G0175000 Salix brachista HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1094 77.1
vmacro23029 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1678.3 1119 74.4
Lj2g0027017 Lotus japonicus HOM05D002380 ORTHO05D006960 0.0e+00 1676.4 1087 77.0
Gorai.010G143100 Gossypium raimondii HOM05D002380 ORTHO05D006960 0.0e+00 1674.8 1092 76.1
Actinidia01643 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1674.4 1089 75.8
Gohir.A06G115700 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1669.8 1092 76.2
Gohir.D06G122900 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1668.7 1092 75.9
Cc02_g23660 Coffea canephora HOM05D002380 ORTHO05D006960 0.0e+00 1659.8 1084 75.2
arahy.Tifrunner.gnm1.ann1.551JVB Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1086 75.6
arahy.Tifrunner.gnm1.ann1.QHFI3V Arachis hypogaea HOM05D002380 ORTHO05D006960 0.0e+00 1657.5 1086 75.6
MBI03_g21084_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D006960 0.0e+00 1656.0 1095 74.8
PGR042G1044 Punica granatum HOM05D002380 ORTHO05D006960 0.0e+00 1651.3 1100 74.8
Lalb_Chr18g0061151 Lupinus albus HOM05D002380 ORTHO05D006960 0.0e+00 1650.6 1086 75.3
Aqoxy6G00017 Aquilegia oxysepala HOM05D002380 ORTHO05D006960 0.0e+00 1643.2 1093 74.7
Haze_09967 Corylus avellana HOM05D002380 ORTHO05D006960 0.0e+00 1619.0 1094 76.7
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1616.7 1101 73.5
CAN.G855.61 Capsicum annuum HOM05D002380 ORTHO05D006960 0.0e+00 1611.7 1088 73.7
Peaxi162Scf00011g02119 Petunia axillaris HOM05D002380 ORTHO05D006960 0.0e+00 1611.3 1087 73.6
MSTRG.27885 Avicennia marina HOM05D002380 ORTHO05D006960 0.0e+00 1610.9 1089 72.9
Nn5g27142 Nelumbo nucifera HOM05D002380 ORTHO05D006960 0.0e+00 1607.8 1019 78.9
Sp6g11200 Schrenkiella parvula HOM05D002380 ORTHO05D006960 0.0e+00 1605.1 1093 73.1
Sopen01g045350 Solanum pennellii HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1089 73.1
THA.LOC104809041 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1603.6 1091 72.2
Thhalv10028379m.g Eutrema salsugineum HOM05D002380 ORTHO05D006960 0.0e+00 1603.2 1093 72.7
Solyc01g102940.3 Solanum lycopersicum HOM05D002380 ORTHO05D006960 0.0e+00 1602.8 1089 72.9
Carub.0008s0969 Capsella rubella HOM05D002380 ORTHO05D006960 0.0e+00 1601.3 1089 72.5
AL8G23780 Arabidopsis lyrata HOM05D002380 ORTHO05D006960 0.0e+00 1600.9 1089 72.2
PGSC0003DMG400020720 Solanum tuberosum HOM05D002380 ORTHO05D006960 0.0e+00 1600.1 1089 73.1
A02p12930 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1093 72.8
BraA02t06347Z Brassica rapa HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1093 72.8
DCAR_001729 Daucus carota HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1100 72.9
Oeu016644.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1598.2 1115 72.5
AT5G49810 Arabidopsis thaliana HOM05D002380 ORTHO05D006960 0.0e+00 1596.6 1088 72.2
Duzib192G0099 Durio zibethinus HOM05D002380 ORTHO05D006960 0.0e+00 1593.9 1092 74.4
CARHR258960 Cardamine hirsuta HOM05D002380 ORTHO05D006960 0.0e+00 1593.6 1088 72.7
PSO210G3401 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1593.2 1087 72.7
THA.LOC104800334 Tarenaya hassleriana HOM05D002380 ORTHO05D006960 0.0e+00 1590.5 1074 73.6
PSO528G0147 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1590.1 1089 72.8
BcaB05g24066 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1093 72.6
BolC2t08245H Brassica oleracea HOM05D002380 ORTHO05D006960 0.0e+00 1588.9 1093 72.6
BcaC03g14666 Brassica carinata HOM05D002380 ORTHO05D006960 0.0e+00 1588.5 1093 72.6
C02p21040 Brassica napus HOM05D002380 ORTHO05D006960 0.0e+00 1587.8 1093 72.5
AUR62042248 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1587.8 1089 71.8
Migut.N00867 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1586.6 1087 71.8
PSO447G0289 Papaver somniferum HOM05D002380 ORTHO05D006960 0.0e+00 1586.2 1087 72.6
ECA236G1140 Erigeron canadensis HOM05D002380 ORTHO05D006960 0.0e+00 1584.7 1090 72.4
Ah.02g128480 Amaranthus hybridus HOM05D002380 ORTHO05D006960 0.0e+00 1580.5 1087 71.8
HanXRQChr04g0109261 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1088 71.6
Hund15344 Selenicereus undatus HOM05D002380 ORTHO05D006960 0.0e+00 1577.0 1089 72.5
HanXRQChr15g0469711 Helianthus annuus HOM05D002380 ORTHO05D006960 0.0e+00 1574.7 1094 71.8
Lsat_1_v5_gn_9_83520 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1572.4 1089 71.7
vmacro19822 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 0.0e+00 1570.8 1005 76.9
FAN08G1900 Fragaria x ananassa HOM05D002380 ORTHO05D006960 0.0e+00 1569.7 998 79.4
SGA_v2.0_scaffold100G29554 Striga asiatica HOM05D002380 ORTHO05D006960 0.0e+00 1566.2 1101 70.5
EL10Ac6g13966 Beta vulgaris HOM05D002380 ORTHO05D006960 0.0e+00 1565.8 1088 70.9
Aa31sc192G20 Aethionema arabicum HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1120 69.6
Oeu043598.1 Olea europaea HOM05D002380 ORTHO05D006960 0.0e+00 1565.4 1087 72.6
SalBow4G1427 Salvia bowleyana HOM05D002380 ORTHO05D006960 0.0e+00 1561.2 1157 67.7
AUR62032480 Chenopodium quinoa HOM05D002380 ORTHO05D006960 0.0e+00 1541.2 1061 71.8
Migut.B00709 Erythranthe guttata HOM05D002380 ORTHO05D006960 0.0e+00 1535.4 1090 69.7
Lj9C258G8 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1535.0 1112 70.1
Lsat_1_v5_gn_9_125160 Lactuca sativa HOM05D002380 ORTHO05D006960 0.0e+00 1531.5 1112 68.7
Sc03g0005740 Simmondsia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1511.9 982 76.3
Os05g0105000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D006960 0.0e+00 1499.2 1088 67.9
ATR1089G010 Amborella trichopoda HOM05D002380 ORTHO05D006960 0.0e+00 1497.3 1116 67.5
Zm00001eb356170 Zea mays HOM05D002380 ORTHO05D006960 0.0e+00 1457.2 1110 64.6
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 0.0e+00 1454.1 1088 68.2
Actinidia00145 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1389.8 1092 66.3
Gohir.A05G109500 Gossypium hirsutum HOM05D002380 ORTHO05D006960 0.0e+00 1280.4 795 79.9
AagrBONN_evm.TU.Sc2ySwM_117.3323 Anthoceros agrestis HOM05D002380 ORTHO05D006960 0.0e+00 1181.0 1095 54.0
Pp3c11_2824 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1174.5 1101 53.6
Dinv29685 Davidia involucrata HOM05D002380 ORTHO05D006960 0.0e+00 1171.4 692 83.4
Actinidia11733 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1169.5 717 80.6
SMO301G0051 Selaginella moellendorffii HOM05D002380 ORTHO05D006960 0.0e+00 1167.5 1091 53.9
Pp3c11_2820 Physcomitrium patens HOM05D002380 ORTHO05D006960 0.0e+00 1154.0 1143 51.6
Actinidia25324 Actinidia chinensis HOM05D002380 ORTHO05D006960 0.0e+00 1144.0 674 82.6
Mapoly0008s0067 Marchantia polymorpha HOM05D002380 ORTHO05D006960 0.0e+00 1143.6 1095 52.5
Lj5A286G23 Lonicera japonica HOM05D002380 ORTHO05D006960 0.0e+00 1117.1 760 74.2
SEGI_21259 Sequoiadendron giganteum HOM05D002380 ORTHO05D006960 2.5e-305 1052.4 844 62.2
COL.COLO4_31108 Corchorus olitorius HOM05D002380 ORTHO05D006960 3.5e-275 952.2 616 78.2
CDE04G0097 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 2.9e-274 949.1 820 60.1
Pp3c2_34390 Physcomitrium patens HOM05D002380 ORTHO05D006960 9.5e-257 891.0 962 48.9
vmacro23188 Vaccinium macrocarpon HOM05D002380 ORTHO05D006960 3.0e-250 869.4 688 65.3
SGA_v2.0_scaffold8G04465 Striga asiatica HOM05D002380 ORTHO05D006960 1.6e-235 820.5 502 79.5
CDE07G1039 Ceratophyllum demersum HOM05D002380 ORTHO05D006960 1.6e-232 810.4 634 64.5
Rhsim11G0165900 Rhododendron simsii HOM05D002380 ORTHO05D006960 5.1e-218 762.3 978 47.0
SGA_v2.0_scaffold8G04464 Striga asiatica HOM05D002380 ORTHO05D006960 1.1e-175 621.7 615 54.1
HPP92_002029 Vanilla planifolia HOM05D002380 ORTHO05D006960 2.6e-169 600.5 429 71.3
Lj5A286G24 Lonicera japonica HOM05D002380 ORTHO05D006960 1.0e-146 525.4 306 81.4
Dinv29684 Davidia involucrata HOM05D002380 ORTHO05D006960 6.4e-136 489.6 393 66.7
HPP92_001968 Vanilla planifolia HOM05D002380 ORTHO05D006960 3.9e-133 480.3 313 75.1
Gohir.A05G109600 Gossypium hirsutum HOM05D002380 ORTHO05D023317 3.0e-85 321.2 244 68.4
Ciclev10003598m.g Citrus clementina HOM05D002380 ORTHO05D006960 8.7e-85 319.7 299 59.5
Glyma.12G000300 Glycine max HOM05D002380 ORTHO05D020389 2.6e-65 255.0 136 83.8
HPP92_002030 Vanilla planifolia HOM05D002380 ORTHO05D006960 1.1e-63 249.6 205 62.4
CDE07G1792 Ceratophyllum demersum HOM05D002380 ORTHO05D020389 8.8e-45 186.8 141 60.3
arahy.Tifrunner.gnm1.ann1.GM2IKF Arachis hypogaea HOM05D000651 ORTHO05D016628 7.5e-36 157.1 160 55.6
Hma1.2p1_0071F.1_g037870 Hydrangea macrophylla HOM05D002380 ORTHO05D023317 7.7e-33 147.1 152 54.6
COL.COLO4_31109 Corchorus olitorius HOM05D002380 ORTHO05D023317 8.6e-32 143.7 108 64.8
Eucgr.G00059 Eucalyptus grandis HOM05D002380 ORTHO05D020389 4.3e-31 141.4 72 90.3
Ciclev10003848m.g Citrus clementina HOM05D002380 ORTHO05D020389 5.6e-31 141.0 156 48.7
Actinidia11734 Actinidia chinensis HOM05D002380 ORTHO05D023317 6.4e-27 127.5 88 69.3
DCAR_016399 Daucus carota HOM05D002380 ORTHO05D175910 1.2e-25 123.2 97 62.9
Psat7g071520 Pisum sativum HOM05D002380 ORTHO05D023317 3.2e-18 98.6 131 48.1
TPR.G25657 Trifolium pratense HOM05D002380 ORTHO05D411535 9.5e-15 87.0 47 89.4
SEGI_06600 Sequoiadendron giganteum HOM05D002380 ORTHO05D020389 4.0e-13 81.6 49 69.4
HPP92_001966 Vanilla planifolia HOM05D002380 ORTHO05D020389 2.4e-10 72.4 85 40.0
arahy.Tifrunner.gnm1.ann1.Z2ISY4 Arachis hypogaea HOM05D000651 ORTHO05D016628 5.4e-10 71.2 114 42.1
GSVIVG01037094001 Vitis vinifera HOM05D002380 ORTHO05D020389 2.5e-07 62.4 38 76.3


User provided reference genes

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