Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G195700 Carya illinoinensis HOM05D005917 ORTHO05D007517 7.8e-294 1013.1 513 100.0
Cfa014247 Carpinus fangiana HOM05D005917 ORTHO05D007517 1.8e-242 842.4 512 84.8
Haze_12696 Corylus avellana HOM05D005917 ORTHO05D007517 1.3e-237 826.2 507 83.8
QL08p028769 Quercus lobata HOM05D005917 ORTHO05D007517 5.3e-234 814.3 513 83.4
Duzib133G0758 Durio zibethinus HOM05D005917 ORTHO05D007517 6.1e-222 774.2 514 78.0
Thecc.01G189700 Theobroma cacao HOM05D005917 ORTHO05D007517 5.1e-221 771.2 515 77.5
CsaV3_7G002690 Cucumis sativus L. HOM05D005917 ORTHO05D007517 1.4e-218 763.1 515 76.9
ClCG02G002680 Citrullus lanatus HOM05D005917 ORTHO05D007517 2.4e-218 762.3 515 76.7
Gorai.007G167200 Gossypium raimondii HOM05D005917 ORTHO05D007517 7.7e-217 757.3 516 75.8
Gohir.A11G150200 Gossypium hirsutum HOM05D005917 ORTHO05D007517 5.5e-215 751.1 516 75.2
COL.COLO4_33026 Corchorus olitorius HOM05D005917 ORTHO05D007517 2.1e-214 749.2 517 76.0
Gohir.D11G156700 Gossypium hirsutum HOM05D005917 ORTHO05D007517 2.1e-214 749.2 518 75.3
Manes.13G063400 Manihot esculenta HOM05D005917 ORTHO05D007517 2.1e-214 749.2 520 75.6
Potri.002G222100 Populus trichocarpa HOM05D005917 ORTHO05D007517 1.0e-213 746.9 522 74.5
Sabra02G0169500 Salix brachista HOM05D005917 ORTHO05D007517 8.2e-211 737.3 520 73.5
Prupe.3G202200 Prunus persica HOM05D005917 ORTHO05D007517 2.4e-210 735.7 513 77.2
Sed0016848 Sechium edule HOM05D005917 ORTHO05D007517 7.0e-210 734.2 519 74.6
Cpa.g.sc136.15 Carica papaya HOM05D005917 ORTHO05D007517 9.1e-210 733.8 514 74.7
MD09G1121500 Malus domestica HOM05D005917 ORTHO05D007517 9.1e-210 733.8 514 76.7
TWI36G1171 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 3.5e-209 731.9 518 75.5
PGR042G1386 Punica granatum HOM05D005917 ORTHO05D007517 1.5e-207 726.5 511 74.8
TWI18G0259 Tripterygium wilfordii HOM05D005917 ORTHO05D007517 9.4e-207 723.8 512 75.2
MD17G1112500 Malus domestica HOM05D005917 ORTHO05D007517 3.9e-205 718.4 514 75.7
THA.LOC104802624 Tarenaya hassleriana HOM05D005917 ORTHO05D007517 6.7e-205 717.6 515 72.0
PGSC0003DMG400006133 Solanum tuberosum HOM05D005917 ORTHO05D007517 1.1e-204 716.8 519 72.4
TPR.G15058 Trifolium pratense HOM05D005917 ORTHO05D007517 3.3e-204 715.3 516 74.4
Sopen07g024410 Solanum pennellii HOM05D005917 ORTHO05D007517 9.7e-204 713.8 519 72.6
Cc02_g11180 Coffea canephora HOM05D005917 ORTHO05D007517 2.8e-203 712.2 535 71.0
Glyma.14G006700 Glycine max HOM05D005917 ORTHO05D007517 2.8e-203 712.2 518 73.4
Solyc07g047980.3 Solanum lycopersicum HOM05D005917 ORTHO05D007517 2.8e-203 712.2 518 72.4
Peaxi162Scf00776g00033 Petunia axillaris HOM05D005917 ORTHO05D007517 3.7e-203 711.8 517 72.9
Ca_06463_v3 Cicer arietinum L. HOM05D005917 ORTHO05D007517 2.4e-202 709.1 517 73.5
Lalb_Chr17g0349121 Lupinus albus HOM05D005917 ORTHO05D007517 2.4e-202 709.1 521 72.9
Nitab4.5_0005699g0010 Nicotiana tabacum HOM05D005917 ORTHO05D007517 3.1e-202 708.8 524 71.6
arahy.Tifrunner.gnm1.ann1.V8M1HU Arachis hypogaea HOM05D005917 ORTHO05D007517 5.3e-202 708.0 520 72.5
Glyma.02G306400 Glycine max HOM05D005917 ORTHO05D007517 2.0e-201 706.1 518 73.2
Aa31LG5G18370 Aethionema arabicum HOM05D005917 ORTHO05D007517 5.9e-201 704.5 517 71.2
Psat0s736g0080 Pisum sativum HOM05D005917 ORTHO05D007517 7.7e-201 704.1 516 73.4
CAN.G854.3 Capsicum annuum HOM05D005917 ORTHO05D007517 1.0e-200 703.7 519 71.9
Atru.chr6.3353 Acer truncatum HOM05D005917 ORTHO05D007517 1.3e-200 703.4 519 71.1
RcHm_v2.0_Chr2g0156781 Rosa chinensis HOM05D005917 ORTHO05D007517 3.8e-200 701.8 517 74.3
Ciclev10014942m.g Citrus clementina HOM05D005917 ORTHO05D007517 1.1e-199 700.3 523 70.7
Potri.014G164200 Populus trichocarpa HOM05D005917 ORTHO05D007517 4.2e-199 698.4 526 70.3
FAN09G3123 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.2e-199 697.6 517 74.1
Nitab4.5_0000441g0160 Nicotiana tabacum HOM05D005917 ORTHO05D007517 7.2e-199 697.6 519 70.7
FAN05G4769 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.6e-198 696.4 516 74.2
Hma1.2p1_0405F.1_g145810 Hydrangea macrophylla HOM05D005917 ORTHO05D007517 1.6e-198 696.4 515 71.5
FvH4_6g41230 Fragaria vesca HOM05D005917 ORTHO05D007517 2.7e-198 695.7 517 73.7
Thhalv10022183m.g Eutrema salsugineum HOM05D005917 ORTHO05D007517 3.6e-198 695.3 508 72.4
Medtr5g097510 Medicago truncatula HOM05D005917 ORTHO05D007517 3.6e-198 695.3 521 72.0
LjContig00081g0012334 Lotus japonicus HOM05D005917 ORTHO05D007517 1.0e-197 693.7 524 70.4
FAN14G0404 Fragaria x ananassa HOM05D005917 ORTHO05D007517 1.8e-197 693.0 517 73.7
VMungo0647G1382 Vigna mungo HOM05D005917 ORTHO05D007517 2.3e-197 692.6 517 71.6
arahy.Tifrunner.gnm1.ann1.410RPC Arachis hypogaea HOM05D005917 ORTHO05D007517 5.2e-197 691.4 513 72.1
Lj1P791T65 Lonicera japonica HOM05D005917 ORTHO05D007517 6.8e-197 691.0 518 71.6
Eucgr.K00656 Eucalyptus grandis HOM05D005917 ORTHO05D007517 2.0e-196 689.5 517 71.4
Phvul.008G286200 Phaseolus vulgaris HOM05D005917 ORTHO05D007517 3.4e-196 688.7 519 72.3
Ah.14g082780 Amaranthus hybridus HOM05D005917 ORTHO05D007517 4.4e-196 688.3 512 71.7
AL3G19160 Arabidopsis lyrata HOM05D005917 ORTHO05D007517 4.4e-196 688.3 508 71.3
Rhsim06G0173900 Rhododendron simsii HOM05D005917 ORTHO05D007517 1.3e-195 686.8 515 71.5
Sp3g06720 Schrenkiella parvula HOM05D005917 ORTHO05D007517 1.4e-194 683.3 507 71.0
EL10Ac9g22738 Beta vulgaris HOM05D005917 ORTHO05D007517 2.4e-194 682.6 516 72.3
CARHR082500 Cardamine hirsuta HOM05D005917 ORTHO05D007517 7.0e-194 681.0 509 71.5
Nn1g08522 Nelumbo nucifera HOM05D005917 ORTHO05D007517 9.1e-194 680.6 522 69.5
Manes.12G062101 Manihot esculenta HOM05D005917 ORTHO05D007517 1.6e-193 679.9 516 70.0
AT3G07790 Arabidopsis thaliana HOM05D005917 ORTHO05D007517 5.9e-193 677.9 513 70.4
vmacro12107 Vaccinium macrocarpon HOM05D005917 ORTHO05D007517 8.5e-192 674.1 514 71.2
Lsat_1_v5_gn_7_96161 Lactuca sativa HOM05D005917 ORTHO05D007517 2.1e-190 669.5 521 69.3
DCAR_019712 Daucus carota HOM05D005917 ORTHO05D007517 4.7e-190 668.3 517 69.6
Sc21g0000840 Simmondsia chinensis HOM05D005917 ORTHO05D007517 1.4e-189 666.8 514 70.4
TAR624G1058 Trochodendron aralioides HOM05D005917 ORTHO05D007517 2.3e-189 666.0 529 68.1
MBI16_g11554_MAGBIO Magnolia biondii HOM05D005917 ORTHO05D007517 3.0e-189 665.6 522 68.6
Carub.0003s0737 Capsella rubella HOM05D005917 ORTHO05D007517 5.2e-189 664.8 514 69.5
SHI10119 Sapria himalayana HOM05D005917 ORTHO05D007517 5.2e-189 664.8 517 67.3
Dinv07857 Davidia involucrata HOM05D005917 ORTHO05D007517 3.7e-187 658.7 515 70.7
MSTRG.14928 Avicennia marina HOM05D005917 ORTHO05D007517 2.4e-186 656.0 531 66.9
AUR62017525 Chenopodium quinoa HOM05D005917 ORTHO05D007517 3.1e-186 655.6 520 68.8
SalBow2G2149 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.6e-185 653.3 524 67.9
FAN02G4512 Fragaria x ananassa HOM05D005917 ORTHO05D007517 7.7e-185 651.0 514 71.0
SalBow2G0814 Salvia bowleyana HOM05D005917 ORTHO05D007517 1.7e-184 649.8 528 67.4
Aqoxy1G02033 Aquilegia oxysepala HOM05D005917 ORTHO05D007517 1.1e-183 647.1 519 65.7
ECA236G4414 Erigeron canadensis HOM05D005917 ORTHO05D007517 1.9e-183 646.4 524 65.8
BolC1t05532H Brassica oleracea HOM05D005917 ORTHO05D007517 1.6e-182 643.3 512 68.4
SGA_v2.0_scaffold302G47853 Striga asiatica HOM05D005917 ORTHO05D000086 3.6e-182 642.1 527 66.6
BcaC09g47947 Brassica carinata HOM05D005917 ORTHO05D007517 6.1e-182 641.3 510 68.2
C05p59510 Brassica napus HOM05D005917 ORTHO05D007517 1.0e-181 640.6 511 69.3
BraA01t04362Z Brassica rapa HOM05D005917 ORTHO05D007517 1.4e-181 640.2 512 68.8
BolC5t34607H Brassica oleracea HOM05D005917 ORTHO05D007517 2.3e-181 639.4 511 69.1
AUR62015069 Chenopodium quinoa HOM05D005917 ORTHO05D007517 9.8e-180 634.0 471 71.3
BcaC05g29571 Brassica carinata HOM05D005917 ORTHO05D007517 2.2e-179 632.9 513 68.2
BraA05t22776Z Brassica rapa HOM05D005917 ORTHO05D007517 4.9e-179 631.7 509 68.4
A05p40430 Brassica napus HOM05D005917 ORTHO05D007517 1.1e-178 630.6 509 68.2
PSO700G0235 Papaver somniferum HOM05D005917 ORTHO05D007517 5.4e-178 628.2 527 64.5
HanXRQChr04g0126661 Helianthus annuus HOM05D005917 ORTHO05D007517 7.0e-178 627.9 518 65.3
PSO761G0708 Papaver somniferum HOM05D005917 ORTHO05D007517 4.6e-177 625.2 527 64.5
Migut.M00025 Erythranthe guttata HOM05D005917 ORTHO05D007517 4.4e-172 608.6 519 64.2
Oeu012341.1 Olea europaea HOM05D005917 ORTHO05D007517 4.9e-171 605.1 525 63.0
CDE02G0007 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 6.2e-166 588.2 514 63.2
TAR626G1403 Trochodendron aralioides HOM05D005917 ORTHO05D007517 3.1e-165 585.9 471 66.9
CSS0026358 Camellia sinensis var. sinensis HOM05D005917 ORTHO05D007517 2.4e-162 576.2 519 64.5
HPP92_002896 Vanilla planifolia HOM05D005917 ORTHO05D007517 2.4e-162 576.2 535 59.8
HPP92_002885 Vanilla planifolia HOM05D005917 ORTHO05D007517 8.6e-160 567.8 535 59.3
unitig_747.g21169 Utricularia gibba HOM05D005917 ORTHO05D007517 3.3e-159 565.8 529 59.2
Actinidia09775 Actinidia chinensis HOM05D005917 ORTHO05D007517 3.6e-158 562.4 464 65.9
Os06g0502900 Oryza sativa ssp. japonica HOM05D005917 ORTHO05D007517 1.8e-149 533.5 528 57.4
Zm00001eb403830 Zea mays HOM05D005917 ORTHO05D007517 1.3e-139 500.7 522 55.4
Zm00001eb209420 Zea mays HOM05D005917 ORTHO05D007517 3.8e-139 499.2 522 55.2
Zm00001eb209430 Zea mays HOM05D005917 ORTHO05D007517 6.4e-139 498.4 522 55.0
ATR0665G318 Amborella trichopoda HOM05D005917 ORTHO05D007517 1.5e-132 477.2 517 55.7
GSVIVG01030044001 Vitis vinifera HOM05D005917 ORTHO05D000188 7.6e-132 474.9 483 56.5
SEGI_07273 Sequoiadendron giganteum HOM05D005917 ORTHO05D007517 3.8e-131 472.6 530 51.9
Manes.12G052600 Manihot esculenta HOM05D005917 ORTHO05D007517 1.5e-127 460.7 513 54.2
Mapoly0016s0028 Marchantia polymorpha HOM05D005917 ORTHO05D007517 1.6e-121 440.7 543 49.9
CDE09G1298 Ceratophyllum demersum HOM05D005917 ORTHO05D007517 4.3e-119 432.6 307 71.3
Pp3c5_28640 Physcomitrium patens HOM05D005917 ORTHO05D007517 4.1e-117 426.0 535 49.0
MELO3C024210.2 Cucumis melo HOM05D005917 ORTHO05D007517 3.8e-107 392.9 292 70.9
SMO347G0414 Selaginella moellendorffii HOM05D005917 ORTHO05D007517 1.2e-105 387.9 520 45.0
Migut.L01336 Erythranthe guttata HOM05D005917 ORTHO05D007517 6.5e-99 365.5 509 47.5
CBR_g39617 Chara braunii HOM05D005917 ORTHO05D007517 1.1e-90 338.2 575 40.9
HanXRQChr11g0328131 Helianthus annuus HOM05D005917 ORTHO05D007517 1.2e-60 238.4 286 48.6
Sed0013022 Sechium edule HOM05D005917 ORTHO05D007517 7.5e-55 219.2 201 64.2
AagrBONN_evm.TU.Sc2ySwM_344.1277 Anthoceros agrestis HOM05D005917 ORTHO05D007517 1.2e-52 211.8 343 40.5
TPR.G18819 Trifolium pratense HOM05D005917 ORTHO05D007517 7.3e-42 176.0 287 42.9
Prupe.3G225800 Prunus persica HOM05D005917 ORTHO05D007517 1.4e-29 135.2 98 73.5
FAN14G5926 Fragaria x ananassa HOM05D005917 ORTHO05D007517 9.0e-24 115.9 86 68.6
MCO15G396 Micromonas commoda HOM05D005917 ORTHO05D007517 4.5e-23 113.6 524 27.5
Cre11.g482050 Chlamydomonas reinhardtii HOM05D005917 ORTHO05D007517 1.3e-19 102.1 508 25.2
Manes.16G064350 Manihot esculenta HOM05D005917 ORTHO05D007517 6.7e-19 99.8 71 70.4
FAN02G4549 Fragaria x ananassa HOM05D005917 ORTHO05D007517 2.6e-15 87.8 65 67.7
CAN.G244.10 Capsicum annuum HOM05D000180 ORTHO05D000099 2.2e-14 84.7 73 57.5
Nn6g32049 Nelumbo nucifera HOM05D005917 ORTHO05D007517 1.1e-13 82.4 62 66.1
Nn6g32048 Nelumbo nucifera HOM05D005917 ORTHO05D007517 7.9e-12 76.3 68 64.7
Cfa024500 Carpinus fangiana HOM05D005917 ORTHO05D007517 3.0e-11 74.3 520 23.8


User provided reference genes

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