Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G193900 Carya illinoinensis HOM05D006660 ORTHO05D008184 5.7e-275 950.3 477 100.0
Haze_12725 Corylus avellana HOM05D006660 ORTHO05D008184 1.2e-235 819.7 458 88.6
Thecc.01G186300 Theobroma cacao HOM05D006660 ORTHO05D008184 2.4e-220 768.8 473 80.3
Prupe.3G205300 Prunus persica HOM05D006660 ORTHO05D008184 4.5e-219 764.6 460 82.6
RcHm_v2.0_Chr2g0157231 Rosa chinensis HOM05D006660 ORTHO05D008184 1.1e-217 760.0 468 81.0
TWI36G0095 Tripterygium wilfordii HOM05D006660 ORTHO05D008184 4.2e-217 758.1 459 81.0
Potri.014G163200 Populus trichocarpa HOM05D006660 ORTHO05D008184 1.6e-216 756.1 469 78.9
CSS0034515 Camellia sinensis var. sinensis HOM05D006660 ORTHO05D008184 2.3e-215 752.3 460 81.7
Rhsim04G0045800 Rhododendron simsii HOM05D006660 ORTHO05D008184 1.1e-214 750.0 459 80.2
Manes.12G060700 Manihot esculenta HOM05D006660 ORTHO05D008184 1.5e-214 749.6 472 80.5
FAN02G1797 Fragaria x ananassa HOM05D006660 ORTHO05D008184 5.7e-214 747.7 468 79.5
FAN14G2696 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.6e-214 746.9 469 79.1
FAN14G4026 Fragaria x ananassa HOM05D006660 ORTHO05D008184 9.6e-214 746.9 469 79.1
Actinidia10783 Actinidia chinensis HOM05D006660 ORTHO05D008184 2.1e-213 745.7 459 80.4
FvH4_6g41550 Fragaria vesca HOM05D006660 ORTHO05D008184 4.8e-213 744.6 469 78.9
Nitab4.5_0000130g0170 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.4e-212 742.3 460 78.5
PGR142G4370 Punica granatum HOM05D006660 ORTHO05D008184 4.1e-212 741.5 469 78.5
Gorai.001G097700 Gossypium raimondii HOM05D006660 ORTHO05D008184 5.3e-212 741.1 475 76.4
CANSAT64G1453 Cannabis sativa HOM05D006660 ORTHO05D008184 2.6e-211 738.8 460 79.1
CAN.G784.8 Capsicum annuum HOM05D006660 ORTHO05D008184 1.3e-210 736.5 458 78.4
Atru.chr6.3323 Acer truncatum HOM05D006660 ORTHO05D008184 2.2e-210 735.7 463 78.8
Nitab4.5_0008746g0020 Nicotiana tabacum HOM05D006660 ORTHO05D008184 2.2e-210 735.7 466 78.1
Duzib133G0254 Durio zibethinus HOM05D006660 ORTHO05D008184 2.9e-210 735.3 475 75.8
Sopen07g024990 Solanum pennellii HOM05D006660 ORTHO05D008184 6.5e-210 734.2 458 78.2
FAN05G5067 Fragaria x ananassa HOM05D006660 ORTHO05D008184 1.1e-209 733.4 468 78.6
Sabra14G0124600 Salix brachista HOM05D006660 ORTHO05D008184 1.1e-209 733.4 470 77.4
Solyc07g049590.3 Solanum lycopersicum HOM05D006660 ORTHO05D008184 1.1e-209 733.4 458 78.2
Ciclev10014722m.g Citrus clementina HOM05D006660 ORTHO05D008184 2.7e-208 728.8 467 77.1
PGSC0003DMG400006428 Solanum tuberosum HOM05D006660 ORTHO05D008184 3.5e-208 728.4 458 77.9
Eucgr.K00713 Eucalyptus grandis HOM05D006660 ORTHO05D008184 1.0e-207 726.9 472 75.6
Cc10_g08860 Coffea canephora HOM05D006660 ORTHO05D008184 1.3e-207 726.5 460 77.4
Ca_16352_v3 Cicer arietinum L. HOM05D006660 ORTHO05D008184 1.3e-205 719.9 455 77.6
Nn1g07385 Nelumbo nucifera HOM05D006660 ORTHO05D008184 2.8e-205 718.8 459 76.7
TAR626G1025 Trochodendron aralioides HOM05D006660 ORTHO05D008184 1.8e-204 716.1 459 76.5
Peaxi162Scf01333g00136 Petunia axillaris HOM05D006660 ORTHO05D008184 3.1e-204 715.3 459 76.7
arahy.Tifrunner.gnm1.ann1.V90YU5 Arachis hypogaea HOM05D006660 ORTHO05D008184 9.0e-204 713.8 455 76.5
Sc20g0003860 Simmondsia chinensis HOM05D006660 ORTHO05D008184 9.0e-204 713.8 472 75.2
arahy.Tifrunner.gnm1.ann1.7S53TL Arachis hypogaea HOM05D006660 ORTHO05D008184 4.5e-203 711.4 455 76.3
arahy.Tifrunner.gnm1.ann1.GN08CG Arachis hypogaea HOM05D006660 ORTHO05D008184 4.5e-203 711.4 455 76.3
Cpa.g.sc132.76 Carica papaya HOM05D006660 ORTHO05D008184 5.9e-203 711.1 457 75.9
Medtr3g082870 Medicago truncatula HOM05D006660 ORTHO05D008184 1.0e-202 710.3 463 76.0
THA.LOC104808860 Tarenaya hassleriana HOM05D006660 ORTHO05D008184 1.3e-202 709.9 478 74.1
MELO3C019360.2 Cucumis melo HOM05D006660 ORTHO05D008184 1.4e-201 706.4 459 76.0
Sed0019714 Sechium edule HOM05D006660 ORTHO05D008184 4.2e-201 704.9 460 76.3
CsaV3_2G034260 Cucumis sativus L. HOM05D006660 ORTHO05D008184 7.2e-201 704.1 459 76.0
Thhalv10002462m.g Eutrema salsugineum HOM05D006660 ORTHO05D008184 4.6e-200 701.4 471 74.1
TPR.G22464 Trifolium pratense HOM05D006660 ORTHO05D008184 1.0e-199 700.3 469 73.3
DCAR_019721 Daucus carota HOM05D006660 ORTHO05D008184 5.1e-199 698.0 458 75.3
Lsat_1_v5_gn_5_124741 Lactuca sativa HOM05D006660 ORTHO05D008184 2.0e-198 696.0 458 74.5
ClCG02G009540 Citrullus lanatus HOM05D006660 ORTHO05D008184 4.3e-198 694.9 485 72.2
Psat5g103920 Pisum sativum HOM05D006660 ORTHO05D008184 1.7e-197 693.0 484 71.3
Aa31sc53G10 Aethionema arabicum HOM05D006660 ORTHO05D008184 2.2e-197 692.6 472 73.1
Gohir.A07G086100 Gossypium hirsutum HOM05D006660 ORTHO05D008184 4.8e-197 691.4 475 72.8
AT2G04740 Arabidopsis thaliana HOM05D006660 ORTHO05D008184 6.3e-197 691.0 470 72.6
MSTRG.14936 Avicennia marina HOM05D006660 ORTHO05D008184 8.2e-197 690.6 472 71.0
AUR62015095 Chenopodium quinoa HOM05D006660 ORTHO05D008184 1.4e-196 689.9 472 70.3
AL3G42350 Arabidopsis lyrata HOM05D006660 ORTHO05D008184 4.1e-196 688.3 473 72.9
PSO541G2904 Papaver somniferum HOM05D006660 ORTHO05D008184 5.3e-196 688.0 459 72.5
HanXRQChr10g0306331 Helianthus annuus HOM05D006660 ORTHO05D008184 1.2e-195 686.8 460 72.8
PSO675G7408 Papaver somniferum HOM05D006660 ORTHO05D008184 1.3e-194 683.3 459 72.8
Sp3g23370 Schrenkiella parvula HOM05D006660 ORTHO05D008184 2.2e-194 682.6 466 71.9
Carub.0003s2635 Capsella rubella HOM05D006660 ORTHO05D008184 8.5e-194 680.6 468 72.9
COL.COLO4_35986 Corchorus olitorius HOM05D006660 ORTHO05D008184 8.5e-194 680.6 458 72.9
Aqoxy1G02841 Aquilegia oxysepala HOM05D006660 ORTHO05D008184 5.5e-193 677.9 490 70.4
FAN09G0285 Fragaria x ananassa HOM05D006660 ORTHO05D008184 4.7e-192 674.9 467 74.9
CARHR102690 Cardamine hirsuta HOM05D006660 ORTHO05D008184 1.4e-191 673.3 474 71.5
Glyma.20G057100 Glycine max HOM05D006660 ORTHO05D008184 3.0e-191 672.2 455 72.7
SGA_v2.0_scaffold73G24530 Striga asiatica HOM05D006660 ORTHO05D008184 6.3e-189 664.5 474 69.0
BolC3t17779H Brassica oleracea HOM05D006660 ORTHO05D008184 1.1e-188 663.7 473 70.6
Lj6g0000837 Lotus japonicus HOM05D006660 ORTHO05D008184 1.4e-188 663.3 449 73.3
BcaB08g34485 Brassica carinata HOM05D006660 ORTHO05D008184 7.0e-188 661.0 470 70.0
BraA03t13574Z Brassica rapa HOM05D006660 ORTHO05D008184 1.6e-187 659.8 473 70.0
MBI16_g31717_MAGBIO Magnolia biondii HOM05D006660 ORTHO05D008184 3.5e-187 658.7 460 70.2
BcaC01g03192 Brassica carinata HOM05D006660 ORTHO05D008184 4.5e-187 658.3 470 69.8
C03p55040 Brassica napus HOM05D006660 ORTHO05D008184 7.7e-187 657.5 470 69.8
A03p44410 Brassica napus HOM05D006660 ORTHO05D008184 1.7e-186 656.4 470 69.6
Dinv07831 Davidia involucrata HOM05D006660 ORTHO05D008184 3.2e-185 652.1 401 79.3
Gohir.D07G091200 Gossypium hirsutum HOM05D006660 ORTHO05D008184 3.2e-185 652.1 429 74.6
HPP92_017850 Vanilla planifolia HOM05D006660 ORTHO05D008184 7.2e-185 651.0 462 69.0
EL10Ac3g05658 Beta vulgaris HOM05D006660 ORTHO05D008184 4.7e-184 648.3 457 68.9
Ah.14g082930 Amaranthus hybridus HOM05D006660 ORTHO05D008184 6.7e-183 644.4 457 68.7
Migut.M00006 Erythranthe guttata HOM05D006660 ORTHO05D008184 2.0e-182 642.9 472 69.7
AUR62017555 Chenopodium quinoa HOM05D006660 ORTHO05D008184 5.7e-182 641.3 530 61.5
Oeu040482.1 Olea europaea HOM05D006660 ORTHO05D008184 2.6e-174 615.9 403 76.4
Atru.chr6.3318 Acer truncatum HOM05D006660 ORTHO05D008184 1.4e-164 583.6 405 72.6
Zm00001eb281240 Zea mays HOM05D006660 ORTHO05D008184 4.5e-163 578.6 480 62.1
ECA234G1491 Erigeron canadensis HOM05D006660 ORTHO05D008184 8.6e-162 574.3 458 65.7
Os06g0318200 Oryza sativa ssp. japonica HOM05D006660 ORTHO05D008184 2.8e-160 569.3 464 62.9
SEGI_29705 Sequoiadendron giganteum HOM05D006660 ORTHO05D008184 1.0e-159 567.4 521 57.2
Mapoly0031s0110 Marchantia polymorpha HOM05D006660 ORTHO05D008184 3.7e-149 532.3 521 54.3
Lj8A132T54 Lonicera japonica HOM05D006660 ORTHO05D008184 8.6e-146 521.2 307 81.4
vmacro09381 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 3.2e-140 502.7 310 81.3
Pp3c5_19510 Physcomitrium patens HOM05D006660 ORTHO05D008184 9.2e-140 501.1 503 52.1
Pp3c5_19514 Physcomitrium patens HOM05D006660 ORTHO05D008184 9.2e-140 501.1 503 52.1
GSVIVG01030415001 Vitis vinifera HOM05D006660 ORTHO05D008184 6.0e-139 498.4 315 76.5
Lalb_Chr24g0402731 Lupinus albus HOM05D006660 ORTHO05D008184 2.3e-135 486.5 311 77.2
VMungo1309G1541 Vigna mungo HOM05D006660 ORTHO05D008184 2.3e-130 469.9 313 74.1
ATR0712G111 Amborella trichopoda HOM05D006660 ORTHO05D008184 9.0e-119 431.4 322 68.0
CDE07G0400 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.2e-118 431.0 309 70.6
SMO353G0185 Selaginella moellendorffii HOM05D006660 ORTHO05D008184 8.7e-114 414.8 442 49.8
MD17G1109800 Malus domestica HOM05D006660 ORTHO05D008184 4.8e-112 409.1 460 50.4
CBR_g47999 Chara braunii HOM05D006660 ORTHO05D008184 8.2e-96 355.1 542 37.6
AagrBONN_evm.TU.Sc2ySwM_344.2917 Anthoceros agrestis HOM05D006660 ORTHO05D008184 1.1e-89 334.7 460 42.2
Hund08409 Selenicereus undatus HOM05D006660 ORTHO05D008184 2.7e-75 287.0 210 65.7
CDE04G2012 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.0e-66 256.9 433 36.7
AagrBONN_evm.TU.Sc2ySwM_228.2541 Anthoceros agrestis HOM05D006660 ORTHO05D008184 6.7e-66 255.8 414 37.4
CDE07G1994 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 1.6e-59 234.6 147 74.1
Lj8C132T7 Lonicera japonica HOM05D006660 ORTHO05D008184 6.8e-58 229.2 136 84.6
ATR0712G102 Amborella trichopoda HOM05D006660 ORTHO05D008184 5.4e-55 219.5 134 74.6
Phvul.004G085870 Phaseolus vulgaris HOM05D006660 ORTHO05D008184 2.7e-54 217.2 115 85.2
VMungo1309G0792 Vigna mungo HOM05D006660 ORTHO05D008184 2.5e-52 210.7 136 72.8
Lalb_Chr24g0402711 Lupinus albus HOM05D006660 ORTHO05D008184 2.1e-51 207.6 107 88.8
GSVIVG01030416001 Vitis vinifera HOM05D006660 ORTHO05D008184 1.7e-37 161.4 94 83.0
vmacro09380 Vaccinium macrocarpon HOM05D006660 ORTHO05D008184 3.6e-35 153.7 180 48.9
HanXRQChr08g0218831 Helianthus annuus HOM05D006660 ORTHO05D008184 1.4e-26 125.2 68 85.3
Oeu040483.1 Olea europaea HOM05D006660 ORTHO05D008184 7.8e-22 109.4 58 87.9
CDE04G2605 Ceratophyllum demersum HOM05D006660 ORTHO05D008184 3.4e-17 94.0 54 79.6
Atru.chr6.3319 Acer truncatum HOM05D006660 ORTHO05D008184 1.2e-14 85.5 47 85.1
Cfa027280 Carpinus fangiana HOM05D006660 ORTHO05D008184 3.0e-13 80.9 447 23.7
Zm00001eb418740 Zea mays HOM05D000563 ORTHO05D442000 7.8e-06 56.2 92 34.8


User provided reference genes

Program Settings