Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G190700 Carya illinoinensis HOM05D007042 ORTHO05D008441 1.7e-105 386.0 192 100.0
CiPaw.03G270900 Carya illinoinensis HOM05D007042 ORTHO05D008441 2.9e-84 315.5 190 82.6
Haze_24706 Corylus avellana HOM05D007042 ORTHO05D008441 1.1e-83 313.5 192 81.8
Cfa002484 Carpinus fangiana HOM05D007042 ORTHO05D008441 6.0e-74 281.2 172 80.8
Thecc.01G250400 Theobroma cacao HOM05D007042 ORTHO05D008441 3.9e-73 278.5 187 72.2
Manes.12G044501 Manihot esculenta HOM05D007042 ORTHO05D008441 8.7e-73 277.3 193 72.0
Dinv16402 Davidia involucrata HOM05D007042 ORTHO05D008441 2.1e-71 272.7 188 73.4
Gorai.001G181700 Gossypium raimondii HOM05D007042 ORTHO05D008441 3.7e-71 271.9 193 68.9
Gohir.A07G152300 Gossypium hirsutum HOM05D007042 ORTHO05D008441 8.2e-71 270.8 193 68.4
Atru.chr5.1857 Acer truncatum HOM05D007042 ORTHO05D008441 3.1e-70 268.9 193 71.5
Gohir.D07G158500 Gossypium hirsutum HOM05D007042 ORTHO05D008441 5.3e-70 268.1 193 67.9
Duzib133G0775 Durio zibethinus HOM05D007042 ORTHO05D008441 1.2e-69 266.9 191 69.1
Ciclev10022455m.g Citrus clementina HOM05D007042 ORTHO05D008441 2.6e-69 265.8 186 72.0
Dinv43069 Davidia involucrata HOM05D007042 ORTHO05D008441 2.6e-69 265.8 195 70.8
Potri.002G256700 Populus trichocarpa HOM05D007042 ORTHO05D008441 3.4e-69 265.4 194 70.6
TWI18G1052 Tripterygium wilfordii HOM05D007042 ORTHO05D008441 1.7e-68 263.1 193 68.4
Prupe.8G215500 Prunus persica HOM05D007042 ORTHO05D008441 1.4e-67 260.0 193 68.9
TAR633G0993 Trochodendron aralioides HOM05D007042 ORTHO05D008441 1.9e-67 259.6 192 68.2
GSVIVG01028431001 Vitis vinifera HOM05D007042 ORTHO05D008441 3.2e-67 258.8 193 69.4
arahy.Tifrunner.gnm1.ann1.UI445S Arachis hypogaea HOM05D007042 ORTHO05D008441 9.3e-67 257.3 193 67.9
Glyma.19G168400 Glycine max HOM05D007042 ORTHO05D008441 1.2e-66 256.9 191 67.0
arahy.Tifrunner.gnm1.ann1.T4WIMW Arachis hypogaea HOM05D007042 ORTHO05D008441 1.6e-66 256.5 193 67.4
CSS0015019 Camellia sinensis var. sinensis HOM05D007042 ORTHO05D008441 1.6e-66 256.5 185 69.7
Eucgr.H04779 Eucalyptus grandis HOM05D007042 ORTHO05D008441 2.7e-66 255.8 193 68.4
CsaV3_6G007350 Cucumis sativus L. HOM05D007042 ORTHO05D008441 6.0e-66 254.6 188 68.1
Sed0010391 Sechium edule HOM05D007042 ORTHO05D008441 1.3e-65 253.4 186 67.7
Hma1.2p1_2139F.1_g314960 Hydrangea macrophylla HOM05D007042 ORTHO05D008441 2.3e-65 252.7 192 67.7
QL09p041460 Quercus lobata HOM05D007042 ORTHO05D008441 5.1e-65 251.5 298 51.3
Nn1g02976 Nelumbo nucifera HOM05D007042 ORTHO05D008441 2.5e-64 249.2 188 67.0
Cpa.g.sc87.28 Carica papaya HOM05D007042 ORTHO05D008441 3.3e-64 248.8 185 68.1
MELO3C022392.2 Cucumis melo HOM05D007042 ORTHO05D008441 7.4e-64 247.7 188 67.0
Lj1g0019034 Lotus japonicus HOM05D007042 ORTHO05D008441 7.4e-64 247.7 190 66.8
MD10G1176500 Malus domestica HOM05D007042 ORTHO05D008441 7.4e-64 247.7 193 64.8
Phvul.001G164800 Phaseolus vulgaris HOM05D007042 ORTHO05D008441 7.4e-64 247.7 187 67.4
Cc02_g07760 Coffea canephora HOM05D007042 ORTHO05D008441 3.7e-63 245.4 203 66.0
Glyma.03G167300 Glycine max HOM05D007042 ORTHO05D008441 6.3e-63 244.6 191 66.5
VMungo1383G0900 Vigna mungo HOM05D007042 ORTHO05D008441 1.1e-62 243.8 187 64.7
ClCG06G001410 Citrullus lanatus HOM05D007042 ORTHO05D008441 9.0e-62 240.7 186 66.1
Actinidia09516 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.5e-61 240.0 187 67.9
Aqoxy5G00144 Aquilegia oxysepala HOM05D007042 ORTHO05D008441 3.4e-61 238.8 195 61.0
MD05G1188900 Malus domestica HOM05D007042 ORTHO05D008441 5.9e-61 238.0 192 64.1
Psat3g054000 Pisum sativum HOM05D007042 ORTHO05D008441 7.6e-61 237.7 191 64.4
vmacro14796 Vaccinium macrocarpon HOM05D007042 ORTHO05D008441 1.0e-60 237.3 192 63.0
Lj1A74G98 Lonicera japonica HOM05D007042 ORTHO05D008441 1.3e-60 236.9 193 62.7
Ca_08743_v3 Cicer arietinum L. HOM05D007042 ORTHO05D008441 6.5e-60 234.6 191 62.8
Medtr7g098470 Medicago truncatula HOM05D007042 ORTHO05D008441 1.1e-59 233.8 191 64.4
Oeu048243.1 Olea europaea HOM05D007042 ORTHO05D008441 3.2e-59 232.3 185 65.4
Solyc04g011530.3 Solanum lycopersicum HOM05D007042 ORTHO05D008441 3.2e-59 232.3 193 63.2
HanXRQChr15g0468211 Helianthus annuus HOM05D007042 ORTHO05D008441 7.2e-59 231.1 192 62.0
CAN.G786.8 Capsicum annuum HOM05D007042 ORTHO05D008441 9.4e-59 230.7 186 64.0
AUR62025440 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.2e-58 230.3 190 60.5
EL10Ac7g17687 Beta vulgaris HOM05D007042 ORTHO05D008441 1.6e-58 229.9 178 63.5
Nitab4.5_0010166g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 2.1e-58 229.6 193 62.2
Lalb_Chr20g0113621 Lupinus albus HOM05D007042 ORTHO05D008441 2.7e-58 229.2 187 63.1
Sopen04g005710 Solanum pennellii HOM05D007042 ORTHO05D008441 4.6e-58 228.4 193 62.2
SalBow3G0444 Salvia bowleyana HOM05D007042 ORTHO05D008441 7.9e-58 227.6 195 62.1
Nitab4.5_0013552g0010 Nicotiana tabacum HOM05D007042 ORTHO05D008441 1.4e-57 226.9 193 61.7
PGR031G2106 Punica granatum HOM05D007042 ORTHO05D008441 1.4e-57 226.9 183 63.9
PGSC0003DMG400027743 Solanum tuberosum HOM05D007042 ORTHO05D008441 3.0e-57 225.7 194 62.9
Lsat_1_v5_gn_9_11480 Lactuca sativa HOM05D007042 ORTHO05D008441 1.5e-56 223.4 196 62.8
Peaxi162Scf00760g00324 Petunia axillaris HOM05D007042 ORTHO05D008441 1.5e-56 223.4 155 71.6
BcaC06g36726 Brassica carinata HOM05D007042 ORTHO05D008441 2.5e-56 222.6 189 62.4
C07p00700 Brassica napus HOM05D007042 ORTHO05D008441 2.5e-56 222.6 189 62.4
BolC7t40512H Brassica oleracea HOM05D007042 ORTHO05D008441 2.5e-56 222.6 189 62.4
RcHm_v2.0_Chr6g0286631 Rosa chinensis HOM05D007042 ORTHO05D008441 2.5e-56 222.6 199 59.8
ECA247G0849 Erigeron canadensis HOM05D007042 ORTHO05D008441 3.3e-56 222.2 194 62.9
Migut.F00782 Erythranthe guttata HOM05D007042 ORTHO05D008441 3.3e-56 222.2 185 60.0
BcaB03g16831 Brassica carinata HOM05D007042 ORTHO05D008441 1.7e-55 219.9 194 61.3
A07p00340 Brassica napus HOM05D007042 ORTHO05D008441 2.8e-55 219.2 193 60.1
Hund05486 Selenicereus undatus HOM05D000914 ORTHO05D000718 1.4e-54 216.9 160 62.5
AUR62008799 Chenopodium quinoa HOM05D007042 ORTHO05D008441 1.8e-54 216.5 170 62.4
Sp3g33630 Schrenkiella parvula HOM05D007042 ORTHO05D008441 1.8e-54 216.5 192 60.9
BraA07t27825Z Brassica rapa HOM05D007042 ORTHO05D008441 4.1e-54 215.3 175 63.4
Actinidia27524 Actinidia chinensis HOM05D007042 ORTHO05D008441 9.1e-54 214.2 196 61.2
CDE06G0115 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 9.1e-54 214.2 185 61.6
Thhalv10002102m.g Eutrema salsugineum HOM05D007042 ORTHO05D008441 9.1e-54 214.2 186 60.8
THA.LOC104814528 Tarenaya hassleriana HOM05D007042 ORTHO05D008441 1.2e-53 213.8 190 57.9
ATR0787G115 Amborella trichopoda HOM05D007042 ORTHO05D008441 4.5e-53 211.8 168 63.7
CARHR110910 Cardamine hirsuta HOM05D007042 ORTHO05D008441 4.5e-53 211.8 191 60.2
SHI26738 Sapria himalayana HOM05D007042 ORTHO05D008441 4.5e-53 211.8 190 59.5
FvH4_2g20510 Fragaria vesca HOM05D007042 ORTHO05D008441 1.0e-52 210.7 199 56.8
Aa31LG8G17370 Aethionema arabicum HOM05D007042 ORTHO05D008441 2.9e-52 209.1 188 58.5
Rhsim01G0260600 Rhododendron simsii HOM05D007042 ORTHO05D008441 2.9e-52 209.1 165 62.4
Carub.0003s3477 Capsella rubella HOM05D007042 ORTHO05D008441 3.8e-52 208.8 192 58.9
AL3G53360 Arabidopsis lyrata HOM05D007042 ORTHO05D008441 5.0e-52 208.4 173 62.4
AT2G20390 Arabidopsis thaliana HOM05D007042 ORTHO05D008441 8.5e-52 207.6 192 58.3
SGA_v2.0_scaffold94G28473 Striga asiatica HOM05D007042 ORTHO05D008441 8.5e-52 207.6 195 57.9
PSO170G0149 Papaver somniferum HOM05D007042 ORTHO05D008441 3.6e-50 202.2 204 55.9
FAN24G0975 Fragaria x ananassa HOM05D003075 ORTHO05D003430 2.3e-49 199.5 179 57.5
PSO063G2627 Papaver somniferum HOM05D007042 ORTHO05D008441 6.7e-49 198.0 202 55.4
FAN15G2210 Fragaria x ananassa HOM05D007042 ORTHO05D008441 1.5e-48 196.8 179 57.0
Sc17g0002810 Simmondsia chinensis HOM05D007042 ORTHO05D008441 2.0e-48 196.4 172 56.4
FAN27G0500 Fragaria x ananassa HOM05D007042 ORTHO05D008441 8.2e-47 191.0 162 59.9
Actinidia23697 Actinidia chinensis HOM05D007042 ORTHO05D008441 1.4e-46 190.3 189 57.7
Sabra02G0195200 Salix brachista HOM05D007042 ORTHO05D008441 2.9e-44 182.6 127 73.2
HPP92_014817 Vanilla planifolia HOM05D007042 ORTHO05D008441 6.5e-44 181.4 188 51.6
TPR.G20062 Trifolium pratense HOM05D007042 ORTHO05D008441 7.2e-43 177.9 127 70.9
Zm00001eb088930 Zea mays HOM05D007042 ORTHO05D008441 2.1e-42 176.4 179 50.3
COL.COLO4_03573 Corchorus olitorius HOM05D007042 ORTHO05D008441 1.3e-39 167.2 101 81.2
Os04g0129600 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 5.9e-37 158.3 124 58.1
SHI06358 Sapria himalayana HOM05D007042 ORTHO05D008441 2.0e-32 143.3 112 60.7
SEGI_30132 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 2.0e-32 143.3 153 47.7
Zm00001eb307520 Zea mays HOM05D007042 ORTHO05D008441 3.3e-32 142.5 142 49.3
CDE04G2760 Ceratophyllum demersum HOM05D007042 ORTHO05D008441 1.3e-31 140.6 92 71.7
FAN27G0749 Fragaria x ananassa HOM05D003075 ORTHO05D003430 4.8e-31 138.7 110 59.1
Os02g0754800 Oryza sativa ssp. japonica HOM05D007042 ORTHO05D008441 1.6e-29 133.7 126 55.6
AagrBONN_evm.TU.Sc2ySwM_228.1144 Anthoceros agrestis HOM05D007042 ORTHO05D008441 2.2e-23 113.2 124 47.6
TPR.G20307 Trifolium pratense HOM05D007042 ORTHO05D008441 2.0e-21 106.7 81 64.2
SMO116G0088 Selaginella moellendorffii HOM05D001526 ORTHO05D008441 3.3e-19 99.4 131 42.0
SEGI_30900 Sequoiadendron giganteum HOM05D007042 ORTHO05D008441 1.2e-18 97.4 98 45.9
Mapoly0078s0039 Marchantia polymorpha HOM05D007042 ORTHO05D008441 6.8e-17 91.7 146 38.4
Pp3c18_10950 Physcomitrium patens HOM05D007042 ORTHO05D008441 1.7e-12 77.0 129 34.1
Potri.014G193150 Populus trichocarpa HOM05D007042 ORTHO05D008441 1.5e-11 73.9 64 65.6
EL10As2g23173 Beta vulgaris HOM05D007042 ORTHO05D008441 7.3e-11 71.6 73 43.8
Cre13.g604300 Chlamydomonas reinhardtii HOM05D007042 ORTHO05D008441 7.5e-08 61.6 169 26.0


User provided reference genes

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