Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G189500 Carya illinoinensis HOM05D007808 ORTHO05D009895 2.6e-129 465.3 223 100.0
QL09p041160 Quercus lobata HOM05D007808 ORTHO05D009895 5.5e-95 351.3 220 73.6
Actinidia37545 Actinidia chinensis HOM05D007808 ORTHO05D009895 2.3e-77 292.7 215 62.8
Potri.014G192200 Populus trichocarpa HOM05D007808 ORTHO05D009895 4.4e-76 288.5 221 61.5
Duzib138G1393 Durio zibethinus HOM05D007808 ORTHO05D009895 3.7e-75 285.4 220 59.5
Hma1.2p1_0273F.1_g109280 Hydrangea macrophylla HOM05D007808 ORTHO05D009895 1.8e-74 283.1 218 60.6
Thecc.01G251900 Theobroma cacao HOM05D007808 ORTHO05D009895 1.8e-74 283.1 213 62.0
CANSAT01G0990 Cannabis sativa HOM05D007808 ORTHO05D009895 3.1e-74 282.3 221 57.9
Atru.chr5.1818 Acer truncatum HOM05D007808 ORTHO05D009895 4.1e-74 282.0 217 60.4
Manes.13G040600 Manihot esculenta HOM05D007808 ORTHO05D009895 2.0e-73 279.6 219 57.1
Prupe.8G216500 Prunus persica HOM05D007808 ORTHO05D009895 1.7e-72 276.6 215 60.0
Gohir.D07G157600 Gossypium hirsutum HOM05D007808 ORTHO05D009895 6.6e-72 274.6 220 60.5
Ciclev10020041m.g Citrus clementina HOM05D007808 ORTHO05D009895 3.3e-71 272.3 218 60.1
Gohir.A07G151000 Gossypium hirsutum HOM05D007808 ORTHO05D009895 4.3e-71 271.9 220 59.5
TWI18G1304 Tripterygium wilfordii HOM05D007808 ORTHO05D009895 3.6e-70 268.9 222 58.1
Nn1g02938 Nelumbo nucifera HOM05D007808 ORTHO05D009895 1.4e-69 266.9 210 60.5
RcHm_v2.0_Chr6g0286881 Rosa chinensis HOM05D007808 ORTHO05D009895 6.8e-69 264.6 218 56.4
COL.COLO4_10584 Corchorus olitorius HOM05D007808 ORTHO05D009895 5.7e-68 261.5 239 52.7
Lj2C1144T6 Lonicera japonica HOM05D007808 ORTHO05D009895 1.1e-66 257.3 209 56.9
FvH4_2g20710 Fragaria vesca HOM05D007808 ORTHO05D009895 1.6e-65 253.4 215 56.3
AL8G16070 Arabidopsis lyrata HOM05D007808 ORTHO05D009895 3.0e-64 249.2 208 56.2
Carub.0008s0453 Capsella rubella HOM05D007808 ORTHO05D009895 3.0e-64 249.2 208 56.2
Sc05g0003060 Simmondsia chinensis HOM05D007808 ORTHO05D009895 5.0e-64 248.4 207 54.6
AT5G44010 Arabidopsis thaliana HOM05D007808 ORTHO05D009895 2.5e-63 246.1 208 55.8
GSVIVG01028406001 Vitis vinifera HOM05D007808 ORTHO05D009895 3.3e-63 245.7 197 56.9
A09p20750 Brassica napus HOM05D007808 ORTHO05D009895 7.3e-63 244.6 209 55.0
BraA09t37679Z Brassica rapa HOM05D007808 ORTHO05D009895 7.3e-63 244.6 209 55.0
TAR633G0330 Trochodendron aralioides HOM05D007808 ORTHO05D009895 2.3e-61 239.6 220 52.3
BcaB07g30982 Brassica carinata HOM05D007808 ORTHO05D009895 2.6e-60 236.1 209 54.1
BcaC04g21876 Brassica carinata HOM05D007808 ORTHO05D009895 5.8e-60 235.0 209 54.5
C09p26260 Brassica napus HOM05D007808 ORTHO05D009895 5.8e-60 235.0 209 54.5
Thhalv10003421m.g Eutrema salsugineum HOM05D007808 ORTHO05D009895 5.8e-60 235.0 206 53.4
Eucgr.A01321 Eucalyptus grandis HOM05D007808 ORTHO05D009895 9.8e-60 234.2 210 51.0
PGR031G1809 Punica granatum HOM05D007808 ORTHO05D009895 1.7e-59 233.4 208 50.5
Aqoxy5G00155 Aquilegia oxysepala HOM05D007808 ORTHO05D009895 8.3e-59 231.1 214 50.0
BcaC04g21877 Brassica carinata HOM05D007808 ORTHO05D009895 3.2e-58 229.2 202 54.0
FAN27G2486 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.0e-57 226.5 199 54.3
THA.LOC104801132 Tarenaya hassleriana HOM05D007808 ORTHO05D009895 6.0e-57 224.9 212 51.4
FAN24G0750 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.0e-56 224.2 198 54.0
PSO764G0215 Papaver somniferum HOM05D007808 ORTHO05D009895 1.7e-56 223.4 211 51.2
FAN20G2653 Fragaria x ananassa HOM05D007808 ORTHO05D009895 2.3e-56 223.0 199 53.8
Migut.D00468 Erythranthe guttata HOM05D007808 ORTHO05D009895 5.0e-56 221.9 215 52.1
PSO832G1361 Papaver somniferum HOM05D007808 ORTHO05D009895 8.6e-56 221.1 211 50.7
FAN15G3261 Fragaria x ananassa HOM05D007808 ORTHO05D009895 1.4e-53 213.8 186 54.8
HanXRQChr04g0111341 Helianthus annuus HOM05D007808 ORTHO05D009895 1.4e-53 213.8 201 52.7
Oeu039657.1 Olea europaea HOM05D007808 ORTHO05D009895 2.0e-52 209.9 262 42.0
Gorai.001G180500 Gossypium raimondii HOM05D007808 ORTHO05D009895 9.8e-52 207.6 227 51.1
Solyc09g072860.2 Solanum lycopersicum HOM05D007808 ORTHO05D009895 2.9e-51 206.1 213 48.8
Sopen09g028660 Solanum pennellii HOM05D007808 ORTHO05D009895 2.9e-51 206.1 213 48.8
SGA_v2.0_scaffold1G00644 Striga asiatica HOM05D007808 ORTHO05D009895 1.0e-48 197.6 224 45.5
MBI10_g30718_MAGBIO Magnolia biondii HOM05D007808 ORTHO05D009895 2.5e-47 193.0 180 53.3
Cc01_g17900 Coffea canephora HOM05D007808 ORTHO05D009895 2.1e-46 189.9 202 47.5
DCAR_018515 Daucus carota HOM05D007808 ORTHO05D009895 1.4e-45 187.2 177 51.4
Nitab4.5_0000845g0040 Nicotiana tabacum HOM05D007808 ORTHO05D009895 5.2e-45 185.3 199 47.2
SalBow4G3111 Salvia bowleyana HOM05D007808 ORTHO05D009895 1.5e-44 183.7 184 48.4
CARHR179280 Cardamine hirsuta HOM05D007808 ORTHO05D009895 6.4e-43 178.3 154 57.1
Peaxi162Scf00415g00913 Petunia axillaris HOM05D007808 ORTHO05D009895 1.9e-42 176.8 194 46.9
Os02g0814600 Oryza sativa ssp. japonica HOM05D007808 ORTHO05D009895 2.1e-41 173.3 208 41.3
BolC9t55528H Brassica oleracea HOM05D007808 ORTHO05D009895 1.1e-37 161.0 153 51.6
Zm00001eb191560 Zea mays HOM05D007808 ORTHO05D009895 8.9e-37 157.9 209 40.2
HPP92_025831 Vanilla planifolia HOM05D007808 ORTHO05D009895 4.9e-35 152.1 199 38.2
CSS0046569 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 1.9e-34 150.2 129 55.8
CSS0017675 Camellia sinensis var. sinensis HOM05D007808 ORTHO05D009895 5.4e-34 148.7 129 55.8
Nitab4.5_0010039g0030 Nicotiana tabacum HOM05D007808 ORTHO05D009895 7.1e-34 148.3 169 46.2
ATR0736G152 Amborella trichopoda HOM05D007808 ORTHO05D009895 5.6e-31 138.7 172 41.9
Sp2g08850 Schrenkiella parvula HOM05D007808 ORTHO05D009895 2.0e-20 103.6 153 39.2
Sabra14G0143900 Salix brachista HOM05D007808 ORTHO05D009895 2.7e-17 93.2 66 60.6
CDE02G3651 Ceratophyllum demersum HOM05D007808 ORTHO05D009895 6.0e-17 92.0 101 42.6
Lsat_1_v5_gn_8_92100 Lactuca sativa HOM05D007808 ORTHO05D009895 2.8e-14 83.2 165 30.3
CAN.G1395.2 Capsicum annuum HOM05D007808 ORTHO05D009895 1.5e-12 77.4 60 55.0
CANSAT56G3388 Cannabis sativa HOM05D007808 ORTHO05D009895 1.3e-11 74.3 51 56.9
ECA236G2323 Erigeron canadensis HOM05D000728 ORTHO05D001586 1.6e-09 67.4 57 50.9
C07p26600 Brassica napus HOM05D007808 ORTHO05D009895 2.5e-07 60.1 106 38.7
BraA06t27623Z Brassica rapa HOM05D007808 ORTHO05D009895 6.3e-06 55.5 110 38.2


User provided reference genes

Program Settings