Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G186800 Carya illinoinensis HOM05D007363 ORTHO05D009018 9.9e-86 320.1 163 100.0
Cfa002427 Carpinus fangiana HOM05D007363 ORTHO05D009018 1.6e-51 206.5 147 72.8
GSVIVG01028336001 Vitis vinifera HOM05D007363 ORTHO05D009018 2.3e-50 202.6 157 66.9
QL09p038775 Quercus lobata HOM05D007363 ORTHO05D009018 3.0e-50 202.2 159 67.9
Prupe.8G223500 Prunus persica HOM05D007363 ORTHO05D009018 4.4e-49 198.4 158 67.1
Potri.002G038200 Populus trichocarpa HOM05D007363 ORTHO05D009018 1.7e-48 196.4 153 66.0
TAR365G0665 Trochodendron aralioides HOM05D007363 ORTHO05D009018 1.7e-48 196.4 153 67.3
MD05G1197000 Malus domestica HOM05D007363 ORTHO05D009018 3.7e-48 195.3 150 66.7
Potri.005G224600 Populus trichocarpa HOM05D007363 ORTHO05D009018 3.7e-48 195.3 155 65.2
TWI18G0555 Tripterygium wilfordii HOM05D007363 ORTHO05D009018 3.7e-48 195.3 153 66.0
Nn3g19660 Nelumbo nucifera HOM05D007363 ORTHO05D009018 2.4e-47 192.6 162 64.8
Sabra05G0173300 Salix brachista HOM05D007363 ORTHO05D009018 2.4e-47 192.6 155 64.5
Actinidia25792 Actinidia chinensis HOM05D007363 ORTHO05D009018 3.1e-47 192.2 164 66.5
CSS0036840 Camellia sinensis var. sinensis HOM05D007363 ORTHO05D009018 1.6e-46 189.9 151 66.2
Dinv22404 Davidia involucrata HOM05D007363 ORTHO05D009018 1.6e-46 189.9 153 67.3
Manes.12G032500 Manihot esculenta HOM05D007363 ORTHO05D009018 2.0e-46 189.5 147 66.0
FAN20G0360 Fragaria x ananassa HOM05D007363 ORTHO05D009018 4.5e-46 188.3 121 75.2
Atru.chr5.1691 Acer truncatum HOM05D007363 ORTHO05D009018 5.9e-46 188.0 150 63.3
DCAR_000936 Daucus carota HOM05D007363 ORTHO05D009018 1.3e-45 186.8 153 66.0
RcHm_v2.0_Chr6g0288091 Rosa chinensis HOM05D007363 ORTHO05D009018 2.2e-45 186.0 121 75.2
Duzib133G1388 Durio zibethinus HOM05D007363 ORTHO05D009018 2.9e-45 185.7 148 62.2
Lj1C66G14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.9e-45 185.7 160 60.6
FAN24G0389 Fragaria x ananassa HOM05D007363 ORTHO05D009018 5.0e-45 184.9 155 62.6
FvH4_2g21450 Fragaria vesca HOM05D007363 ORTHO05D009018 6.5e-45 184.5 150 66.0
CANSAT01G1440 Cannabis sativa HOM05D007363 ORTHO05D009018 8.5e-45 184.1 151 61.6
Gohir.A07G148800 Gossypium hirsutum HOM05D007363 ORTHO05D009018 8.5e-45 184.1 148 63.5
COL.COLO4_05892 Corchorus olitorius HOM05D007363 ORTHO05D009018 1.1e-44 183.7 152 59.2
Oeu026230.1 Olea europaea HOM05D007363 ORTHO05D009018 1.1e-44 183.7 152 63.2
Ciclev10024115m.g Citrus clementina HOM05D007363 ORTHO05D009018 2.5e-44 182.6 123 70.7
Hma1.2p1_0576F.1_g182050 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 4.2e-44 181.8 134 71.6
PSO017G1673 Papaver somniferum HOM05D007363 ORTHO05D009018 7.2e-44 181.0 159 61.6
Rhsim01G0263400 Rhododendron simsii HOM05D007363 ORTHO05D009018 1.2e-43 180.3 150 64.0
Gorai.001G177500 Gossypium raimondii HOM05D007363 ORTHO05D009018 1.6e-43 179.9 148 62.8
Peaxi162Scf00013g01119 Petunia axillaris HOM05D007363 ORTHO05D009018 1.6e-43 179.9 128 70.3
Lj1g0022592 Lotus japonicus HOM05D007363 ORTHO05D009018 2.1e-43 179.5 152 61.8
Aqoxy5G00227 Aquilegia oxysepala HOM05D007363 ORTHO05D009018 2.7e-43 179.1 161 59.0
Gohir.D07G155100 Gossypium hirsutum HOM05D007363 ORTHO05D009018 2.7e-43 179.1 148 62.8
Nitab4.5_0020962g0010 Nicotiana tabacum HOM05D007363 ORTHO05D009018 6.1e-43 177.9 153 62.1
Thecc.01G258000 Theobroma cacao HOM05D007363 ORTHO05D009018 6.1e-43 177.9 125 67.2
Duzib138G0908 Durio zibethinus HOM05D007363 ORTHO05D009018 1.0e-42 177.2 149 61.7
PSO063G1687 Papaver somniferum HOM05D007363 ORTHO05D009018 1.4e-42 176.8 159 60.4
Haze_24634 Corylus avellana HOM05D007363 ORTHO05D009018 1.8e-42 176.4 119 74.8
FAN15G0604 Fragaria x ananassa HOM05D007363 ORTHO05D009018 1.8e-42 176.4 111 75.7
HanXRQChr10g0280941 Helianthus annuus HOM05D007363 ORTHO05D009018 1.8e-42 176.4 156 61.5
Sopen06g035280 Solanum pennellii HOM05D007363 ORTHO05D009018 1.8e-42 176.4 150 60.7
PGSC0003DMG400020073 Solanum tuberosum HOM05D007363 ORTHO05D009018 2.3e-42 176.0 150 60.7
Lsat_1_v5_gn_9_8480 Lactuca sativa HOM05D007363 ORTHO05D009018 3.0e-42 175.6 158 58.9
Solyc06g083880.2 Solanum lycopersicum HOM05D007363 ORTHO05D009018 3.0e-42 175.6 153 60.8
Medtr7g096960 Medicago truncatula HOM05D007363 ORTHO05D009018 4.0e-42 175.3 153 60.1
Ca_08677_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 8.8e-42 174.1 123 68.3
Ca_08711_v3 Cicer arietinum L. HOM05D001001 ORTHO05D000808 8.8e-42 174.1 123 68.3
ATR0736G122 Amborella trichopoda HOM05D007363 ORTHO05D009018 1.2e-41 173.7 151 61.6
ECA247G1846 Erigeron canadensis HOM05D007363 ORTHO05D009018 1.2e-41 173.7 125 67.2
arahy.Tifrunner.gnm1.ann1.1CEJ34 Arachis hypogaea HOM05D007363 ORTHO05D009018 1.5e-41 173.3 123 68.3
AT2G20515 Arabidopsis thaliana HOM05D007363 ORTHO05D009018 2.0e-41 172.9 165 58.2
arahy.Tifrunner.gnm1.ann1.F24DAH Arachis hypogaea HOM05D007363 ORTHO05D009018 2.6e-41 172.6 123 69.1
Phvul.001G161200 Phaseolus vulgaris HOM05D007363 ORTHO05D009018 2.6e-41 172.6 123 68.3
Glyma.03G163300 Glycine max HOM05D007363 ORTHO05D009018 3.4e-41 172.2 151 60.3
Sp3g33740 Schrenkiella parvula HOM05D007363 ORTHO05D009018 5.7e-41 171.4 158 58.9
VMungo1383G1059 Vigna mungo HOM05D007363 ORTHO05D009018 7.5e-41 171.0 151 60.3
ClCG09G007810 Citrullus lanatus HOM05D007363 ORTHO05D009018 9.7e-41 170.6 158 57.6
Psat3g056960 Pisum sativum HOM05D007363 ORTHO05D009018 1.3e-40 170.2 157 56.7
AL3G53530 Arabidopsis lyrata HOM05D007363 ORTHO05D009018 4.8e-40 168.3 165 57.0
AUR62011874 Chenopodium quinoa HOM05D005758 ORTHO05D007218 4.8e-40 168.3 124 66.1
Cc01_g18330 Coffea canephora HOM05D007363 ORTHO05D009018 4.8e-40 168.3 122 68.0
CARHR111060 Cardamine hirsuta HOM05D007363 ORTHO05D009018 6.3e-40 167.9 157 58.6
BolC3t14048H Brassica oleracea HOM05D007363 ORTHO05D009018 8.3e-40 167.5 158 57.6
BcaB01g04373 Brassica carinata HOM05D007363 ORTHO05D009018 1.1e-39 167.2 157 59.2
A03p13820 Brassica napus HOM05D007363 ORTHO05D009018 1.1e-39 167.2 158 58.2
Carub.0003s3497 Capsella rubella HOM05D007363 ORTHO05D009018 1.1e-39 167.2 149 60.4
AUR62024717 Chenopodium quinoa HOM05D007363 ORTHO05D009018 1.1e-39 167.2 124 66.1
BcaC01g06392 Brassica carinata HOM05D007363 ORTHO05D009018 1.8e-39 166.4 158 57.0
C03p16260 Brassica napus HOM05D007363 ORTHO05D009018 1.8e-39 166.4 158 57.0
Lalb_Chr01g0019641 Lupinus albus HOM05D007363 ORTHO05D009018 4.1e-39 165.2 155 56.1
Cpa.g.sc165.9 Carica papaya HOM05D007363 ORTHO05D009018 5.3e-39 164.9 123 63.4
THA.LOC104814517 Tarenaya hassleriana HOM05D007363 ORTHO05D009018 5.3e-39 164.9 153 56.9
BraA03t10685Z Brassica rapa HOM05D007363 ORTHO05D009018 9.1e-39 164.1 155 57.4
Thhalv10002113m.g Eutrema salsugineum HOM05D007363 ORTHO05D009018 2.0e-38 162.9 152 59.2
BcaB08g34913 Brassica carinata HOM05D007363 ORTHO05D009018 2.7e-38 162.5 152 58.6
Ah.02g111990 Amaranthus hybridus HOM05D007363 ORTHO05D009018 5.9e-38 161.4 127 66.9
CsaV3_7G027320 Cucumis sativus L. HOM05D007363 ORTHO05D009018 7.7e-38 161.0 159 54.1
SalBow6G5236 Salvia bowleyana HOM05D007363 ORTHO05D009018 1.0e-37 160.6 151 57.6
EL10Ac5g10397 Beta vulgaris HOM05D007363 ORTHO05D009018 2.2e-37 159.5 124 64.5
SGA_v2.0_scaffold510G52612 Striga asiatica HOM05D007363 ORTHO05D009018 2.9e-37 159.1 134 58.2
PGR042G3583 Punica granatum HOM05D007363 ORTHO05D009018 5.0e-37 158.3 165 57.6
Aa31LG8G17460 Aethionema arabicum HOM05D004208 ORTHO05D005156 6.5e-37 157.9 157 56.1
MELO3C015729.2 Cucumis melo HOM05D007363 ORTHO05D009018 8.5e-37 157.5 155 54.8
Eucgr.K03259 Eucalyptus grandis HOM05D007363 ORTHO05D009018 4.2e-36 155.2 156 57.1
Eucgr.L02952 Eucalyptus grandis HOM05D007363 ORTHO05D009018 4.2e-36 155.2 156 57.1
Os04g0517000 Oryza sativa ssp. japonica HOM05D007363 ORTHO05D009018 1.2e-35 153.7 125 60.0
Zm00001eb077670 Zea mays HOM05D007363 ORTHO05D009018 3.6e-35 152.1 122 60.7
Sed0008485 Sechium edule HOM05D007363 ORTHO05D009018 1.4e-34 150.2 125 60.0
unitig_0.g703 Utricularia gibba HOM05D007363 ORTHO05D009018 5.2e-34 148.3 153 51.6
Migut.N02204 Erythranthe guttata HOM05D007363 ORTHO05D009018 1.2e-33 147.1 148 55.4
MBI10_g08049_MAGBIO Magnolia biondii HOM05D007363 ORTHO05D009018 4.4e-33 145.2 108 68.5
Hund02916 Selenicereus undatus HOM05D004102 ORTHO05D005307 2.8e-32 142.5 105 68.6
Hma1.2p1_0576F.1_g182040 Hydrangea macrophylla HOM05D007363 ORTHO05D009018 6.6e-29 131.3 100 70.0
SEGI_29869 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 1.2e-25 120.6 147 44.2
FAN27G1204 Fragaria x ananassa HOM05D007363 ORTHO05D009018 9.8e-25 117.5 82 72.0
Lj2P297T63 Lonicera japonica HOM05D007363 ORTHO05D009018 2.4e-23 112.8 97 60.8
Lsat_1_v5_gn_3_73760 Lactuca sativa HOM05D007363 ORTHO05D009018 6.8e-18 94.7 114 43.9
BcaC07g41210 Brassica carinata HOM05D004208 ORTHO05D005156 1.6e-14 83.6 66 66.7
Lj5P53T14 Lonicera japonica HOM05D007363 ORTHO05D009018 2.7e-14 82.8 77 57.1
SEGI_36288 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 4.6e-14 82.0 108 42.6
Mapoly0037s0134 Marchantia polymorpha HOM05D007363 ORTHO05D009018 7.8e-14 81.3 107 45.8
SEGI_24140 Sequoiadendron giganteum HOM05D007363 ORTHO05D009018 2.1e-11 73.2 102 36.3
Lj6P94T4 Lonicera japonica HOM05D007363 ORTHO05D009018 4.0e-10 68.9 58 62.1
SMO367G0707 Selaginella moellendorffii HOM05D007363 ORTHO05D009018 8.9e-10 67.8 102 36.3
Lj6P297T4 Lonicera japonica HOM05D007363 ORTHO05D009018 1.5e-09 67.0 58 62.1
Pp3c4_16960 Physcomitrium patens HOM05D003750 ORTHO05D004337 2.9e-08 62.8 110 31.8
TAR624G1252 Trochodendron aralioides HOM05D002606 ORTHO05D003016 3.7e-08 62.4 103 36.9
Mapoly0090s0021 Marchantia polymorpha HOM05D021038 ORTHO05D009018 4.9e-08 62.0 110 32.7
unitig_62.g23108 Utricularia gibba HOM05D003750 ORTHO05D004337 6.4e-08 61.6 106 35.8
HPP92_009096 Vanilla planifolia HOM05D003750 ORTHO05D004337 1.1e-07 60.8 107 36.4
Nn3g20965 Nelumbo nucifera HOM05D003750 ORTHO05D004337 2.4e-07 59.7 109 34.9
Peaxi162Scf00035g00302 Petunia axillaris HOM05D003750 ORTHO05D004337 9.2e-07 57.8 102 34.3
PGSC0003DMG400017342 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.2e-07 57.8 86 40.7
PGSC0003DMG400021281 Solanum tuberosum HOM05D003750 ORTHO05D004337 9.2e-07 57.8 87 39.1
Cc05_g09310 Coffea canephora HOM05D003750 ORTHO05D004337 1.6e-06 57.0 103 31.1
HanXRQChr06g0171371 Helianthus annuus HOM05D003750 ORTHO05D004337 1.6e-06 57.0 86 40.7
PGSC0003DMG400007796 Solanum tuberosum HOM05D003750 ORTHO05D004337 1.6e-06 57.0 86 37.2
ClCG02G018380 Citrullus lanatus HOM05D003750 ORTHO05D004337 2.1e-06 56.6 86 38.4
Nitab4.5_0002027g0180 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.1e-06 56.6 87 37.9
Pp3c7_26210 Physcomitrium patens HOM05D021038 ORTHO05D009018 2.1e-06 56.6 108 33.3
Sopen10g003700 Solanum pennellii HOM05D003750 ORTHO05D004337 2.1e-06 56.6 87 37.9
Nitab4.5_0001675g0060 Nicotiana tabacum HOM05D003750 ORTHO05D004337 2.7e-06 56.2 86 39.5
Solyc12g011010.2 Solanum lycopersicum HOM05D003750 ORTHO05D004337 2.7e-06 56.2 86 37.2
CsaV3_6G015810 Cucumis sativus L. HOM05D003750 ORTHO05D004337 3.5e-06 55.8 86 36.0
MBI06_g20684_MAGBIO Magnolia biondii HOM05D003750 ORTHO05D004337 3.5e-06 55.8 103 34.0
Sed0024619 Sechium edule HOM05D003750 ORTHO05D004337 3.5e-06 55.8 109 33.0
Nitab4.5_0001402g0030 Nicotiana tabacum HOM05D003750 ORTHO05D004337 4.6e-06 55.5 87 37.9
Peaxi162Scf00688g00432 Petunia axillaris HOM05D003750 ORTHO05D004337 4.6e-06 55.5 86 40.7
Peaxi162Scf00807g00024 Petunia axillaris HOM05D003750 ORTHO05D004337 4.6e-06 55.5 103 33.0
MSTRG.6755 Avicennia marina HOM05D003750 ORTHO05D004337 6.0e-06 55.1 106 30.2
CAN.G585.54 Capsicum annuum HOM05D003750 ORTHO05D004337 6.0e-06 55.1 86 39.5
MELO3C019689.2 Cucumis melo HOM05D003750 ORTHO05D004337 6.0e-06 55.1 86 36.0
Nitab4.5_0013539g0020 Nicotiana tabacum HOM05D003750 ORTHO05D004337 6.0e-06 55.1 86 38.4
Solyc07g055950.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 6.0e-06 55.1 85 38.8
TAR626G1101 Trochodendron aralioides HOM05D003750 ORTHO05D004337 6.0e-06 55.1 103 33.0
Nn6g34390 Nelumbo nucifera HOM05D003750 ORTHO05D004337 7.8e-06 54.7 109 33.0
Pp3c1_6510 Physcomitrium patens HOM05D021038 ORTHO05D009018 7.8e-06 54.7 144 28.5
Hund08216 Selenicereus undatus HOM05D003750 ORTHO05D004337 7.8e-06 54.7 107 30.8
Solyc10g007800.3 Solanum lycopersicum HOM05D003750 ORTHO05D004337 7.8e-06 54.7 87 36.8
THA.LOC104803179 Tarenaya hassleriana HOM05D003750 ORTHO05D004337 7.8e-06 54.7 103 31.1


User provided reference genes

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