Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G177800 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.2e-141 506.5 261 100.0
CiPaw.04G177500 Carya illinoinensis HOM05D004469 ORTHO05D005429 1.9e-110 402.9 308 73.1
QL02p090812 Quercus lobata HOM05D004469 ORTHO05D005429 1.3e-95 353.6 308 65.9
Cfa002260 Carpinus fangiana HOM05D004469 ORTHO05D005429 2.1e-93 346.3 308 64.6
Thecc.09G137700 Theobroma cacao HOM05D004469 ORTHO05D005429 8.7e-92 340.9 309 61.8
Haze_25443 Corylus avellana HOM05D004469 ORTHO05D005429 2.8e-90 335.9 312 62.2
Prupe.7G257500 Prunus persica HOM05D004469 ORTHO05D005429 3.1e-89 332.4 308 61.0
Atru.chr7.2015 Acer truncatum HOM05D004469 ORTHO05D005429 4.1e-89 332.0 308 60.7
CSS0041761 Camellia sinensis var. sinensis HOM05D004469 ORTHO05D005429 2.9e-87 325.9 308 58.8
Cpa.g.sc46.70 Carica papaya HOM05D004469 ORTHO05D005429 1.4e-86 323.6 308 58.8
Actinidia26357 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.1e-85 319.7 308 57.8
TWI32G1222 Tripterygium wilfordii HOM05D004469 ORTHO05D005429 1.8e-84 316.6 308 59.7
Rhsim03G0253400 Rhododendron simsii HOM05D004469 ORTHO05D005429 2.3e-84 316.2 308 57.1
Nitab4.5_0002286g0020 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.0e-84 315.8 305 56.7
COL.COLO4_33364 Corchorus olitorius HOM05D004469 ORTHO05D005429 6.7e-84 314.7 307 58.3
Peaxi162Scf00088g00521 Petunia axillaris HOM05D004469 ORTHO05D005429 6.7e-84 314.7 308 56.2
Nitab4.5_0002845g0050 Nicotiana tabacum HOM05D004469 ORTHO05D005429 1.1e-83 313.9 305 55.7
Sopen07g003440 Solanum pennellii HOM05D004469 ORTHO05D005429 1.1e-83 313.9 309 56.6
Solyc07g007370.3 Solanum lycopersicum HOM05D004469 ORTHO05D005429 1.5e-83 313.5 309 56.3
CAN.G1281.7 Capsicum annuum HOM05D004469 ORTHO05D005429 1.3e-82 310.5 311 55.3
Ciclev10007887m.g Citrus clementina HOM05D004469 ORTHO05D005429 2.2e-82 309.7 311 57.9
Manes.14G119700 Manihot esculenta HOM05D004469 ORTHO05D005429 2.8e-82 309.3 307 57.0
PGSC0003DMG400030724 Solanum tuberosum HOM05D004469 ORTHO05D005429 6.3e-82 308.1 309 55.0
MELO3C004484.2 Cucumis melo HOM05D004469 ORTHO05D005429 8.2e-82 307.8 308 56.5
CsaV3_2G003380 Cucumis sativus L. HOM05D004469 ORTHO05D005429 3.1e-81 305.8 308 56.2
FvH4_1g01990 Fragaria vesca HOM05D004469 ORTHO05D005429 3.1e-81 305.8 308 55.8
Gohir.A08G091100 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.1e-81 305.8 260 63.5
Gohir.D08G101600 Gossypium hirsutum HOM05D004469 ORTHO05D005429 3.1e-81 305.8 260 63.5
PGR102G2677 Punica granatum HOM05D004469 ORTHO05D005429 4.1e-81 305.4 308 56.8
RcHm_v2.0_Chr2g0087051 Rosa chinensis HOM05D004469 ORTHO05D005429 4.1e-81 305.4 308 56.2
Duzib187G0975 Durio zibethinus HOM05D004469 ORTHO05D005429 9.0e-81 304.3 270 62.2
ClCG11G003510 Citrullus lanatus HOM05D004469 ORTHO05D005429 1.2e-80 303.9 308 56.2
Gorai.004G109600 Gossypium raimondii HOM05D004469 ORTHO05D005429 1.2e-80 303.9 260 63.5
RcHm_v2.0_Chr5g0061231 Rosa chinensis HOM05D004469 ORTHO05D005429 1.2e-80 303.9 308 55.8
MD15G1162100 Malus domestica HOM05D004469 ORTHO05D005429 2.0e-80 303.1 260 63.8
Sed0012323 Sechium edule HOM05D004469 ORTHO05D005429 4.5e-80 302.0 308 55.5
TAR625G0398 Trochodendron aralioides HOM05D004469 ORTHO05D005429 1.3e-79 300.4 308 55.8
FAN28G2138 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.8e-79 298.9 324 52.8
FAN19G1855 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.0e-79 298.5 324 53.1
arahy.Tifrunner.gnm1.ann1.2E9WSC Arachis hypogaea HOM05D004469 ORTHO05D005429 1.1e-78 297.4 315 56.2
Nn2g12194 Nelumbo nucifera HOM05D004469 ORTHO05D005429 1.9e-78 296.6 308 52.6
FAN23G0971 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.2e-78 295.8 324 52.2
arahy.Tifrunner.gnm1.ann1.K75BJP Arachis hypogaea HOM05D004469 ORTHO05D005429 5.5e-78 295.0 315 55.6
FAN26G0918 Fragaria x ananassa HOM05D004469 ORTHO05D005429 1.2e-77 293.9 308 54.2
Sabra06G0044100 Salix brachista HOM05D004469 ORTHO05D005429 2.1e-77 293.1 309 55.3
MSTRG.19616 Avicennia marina HOM05D004469 ORTHO05D005429 4.6e-77 292.0 310 53.2
CANSAT11G1945 Cannabis sativa HOM05D004469 ORTHO05D005429 6.1e-77 291.6 308 52.9
Oeu028017.1 Olea europaea HOM05D004469 ORTHO05D005429 6.1e-77 291.6 310 54.8
Sabra18G0101500 Salix brachista HOM05D004469 ORTHO05D005429 1.4e-76 290.4 310 54.5
Sabra18G0099700 Salix brachista HOM05D004469 ORTHO05D005429 3.0e-76 289.3 310 54.2
Potri.018G118143 Populus trichocarpa HOM05D004469 ORTHO05D005429 3.9e-76 288.9 309 53.7
FAN11G3069 Fragaria x ananassa HOM05D004469 ORTHO05D005429 5.1e-76 288.5 308 52.9
FvH4_3g33700 Fragaria vesca HOM05D004469 ORTHO05D005429 6.7e-76 288.1 308 52.6
Lj9C704T18 Lonicera japonica HOM05D004469 ORTHO05D005429 1.1e-75 287.3 310 54.5
FAN21G2818 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.3e-75 285.8 308 52.3
Lj6g0024161 Lotus japonicus HOM05D004469 ORTHO05D005429 4.3e-75 285.4 310 53.9
Glyma.15G198300 Glycine max HOM05D004469 ORTHO05D005429 1.3e-74 283.9 311 55.0
Hund09311 Selenicereus undatus HOM05D004469 ORTHO05D005429 1.3e-74 283.9 310 54.2
Sc08g0006010 Simmondsia chinensis HOM05D004469 ORTHO05D005429 1.3e-74 283.9 311 53.1
GSVIVG01012860001 Vitis vinifera HOM05D004469 ORTHO05D005429 2.8e-74 282.7 260 59.6
Glyma.09G091700 Glycine max HOM05D004469 ORTHO05D005429 4.8e-74 282.0 312 55.4
SalBow1G3789 Salvia bowleyana HOM05D004469 ORTHO05D005429 4.8e-74 282.0 261 57.9
Migut.J01235 Erythranthe guttata HOM05D004469 ORTHO05D005429 1.1e-73 280.8 261 59.0
Medtr2g450730 Medicago truncatula HOM05D004469 ORTHO05D005429 1.4e-73 280.4 310 53.2
vmacro06114 Vaccinium macrocarpon HOM05D004469 ORTHO05D005429 1.4e-73 280.4 405 43.5
arahy.Tifrunner.gnm1.ann1.T08WW4 Arachis hypogaea HOM05D004469 ORTHO05D005429 1.2e-72 277.3 309 52.8
Cc06_g07630 Coffea canephora HOM05D004469 ORTHO05D005429 2.0e-72 276.6 260 59.2
Thhalv10022623m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.6e-72 276.2 310 52.9
TPR.G23109 Trifolium pratense HOM05D004469 ORTHO05D005429 5.9e-72 275.0 316 52.2
Ca_03095_v3 Cicer arietinum L. HOM05D004469 ORTHO05D005429 1.0e-71 274.2 310 52.3
Phvul.009G212100 Phaseolus vulgaris HOM05D004469 ORTHO05D005429 1.7e-71 273.5 311 54.3
Psat1g021280 Pisum sativum HOM05D004469 ORTHO05D005429 1.7e-71 273.5 310 52.6
VMungo1309G2337 Vigna mungo HOM05D004469 ORTHO05D005429 8.5e-71 271.2 312 53.2
Aqoxy7G03591 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.1e-70 270.8 311 47.9
Lalb_Chr11g0073091 Lupinus albus HOM05D004469 ORTHO05D005429 1.1e-70 270.8 315 52.4
ATR0767G179 Amborella trichopoda HOM05D004469 ORTHO05D005429 2.5e-70 269.6 306 50.0
Sp3g26680 Schrenkiella parvula HOM05D004469 ORTHO05D005429 2.5e-70 269.6 310 51.3
EL10Ac8g18788 Beta vulgaris HOM05D004469 ORTHO05D005429 5.5e-70 268.5 307 51.1
DCAR_014918 Daucus carota HOM05D004469 ORTHO05D005429 1.2e-69 267.3 308 50.3
BcaB08g34526 Brassica carinata HOM05D004469 ORTHO05D005429 1.6e-69 266.9 308 51.3
Thhalv10001944m.g Eutrema salsugineum HOM05D004469 ORTHO05D005429 2.1e-69 266.5 310 51.6
MBI14_g24228_MAGBIO Magnolia biondii HOM05D004469 ORTHO05D005429 2.7e-69 266.2 297 51.2
AT2G12550 Arabidopsis thaliana HOM05D004469 ORTHO05D005429 7.9e-69 264.6 310 51.0
Lsat_1_v5_gn_5_92700 Lactuca sativa HOM05D004469 ORTHO05D005429 7.9e-69 264.6 307 49.2
AUR62011228 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.0e-68 262.7 313 49.5
AUR62020006 Chenopodium quinoa HOM05D004469 ORTHO05D005429 3.0e-68 262.7 310 50.0
HanXRQChr10g0314151 Helianthus annuus HOM05D004469 ORTHO05D005429 3.0e-68 262.7 306 48.0
PSO210G6517 Papaver somniferum HOM05D004469 ORTHO05D005429 6.7e-68 261.5 315 47.9
Aqoxy3G02754 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 1.5e-67 260.4 313 47.3
THA.LOC104808947 Tarenaya hassleriana HOM05D004469 ORTHO05D005429 4.4e-67 258.8 312 50.0
A03p44900 Brassica napus HOM05D004469 ORTHO05D005429 1.7e-66 256.9 308 50.3
AL3G45030 Arabidopsis lyrata HOM05D004469 ORTHO05D005429 2.2e-66 256.5 258 55.8
C03p55780 Brassica napus HOM05D004469 ORTHO05D005429 3.7e-66 255.8 312 49.4
BolC3t17859H Brassica oleracea HOM05D004469 ORTHO05D005429 3.7e-66 255.8 312 49.4
BraA03t13626Z Brassica rapa HOM05D004469 ORTHO05D005429 3.7e-66 255.8 313 49.5
unitig_27.g25106 Utricularia gibba HOM05D004469 ORTHO05D005429 8.2e-66 254.6 273 51.6
Aa31sc54G60 Aethionema arabicum HOM05D004469 ORTHO05D005429 2.4e-65 253.1 258 57.4
Glyma.17G107100 Glycine max HOM05D004469 ORTHO05D005429 7.0e-65 251.5 310 48.7
CARHR105080 Cardamine hirsuta HOM05D004469 ORTHO05D005429 9.1e-65 251.1 263 54.4
Carub.0003s2782 Capsella rubella HOM05D004469 ORTHO05D005429 1.2e-64 250.8 258 55.8
FAN25G0032 Fragaria x ananassa HOM05D004469 ORTHO05D005429 2.0e-64 250.0 245 57.1
ECA234G1865 Erigeron canadensis HOM05D004469 ORTHO05D005429 1.1e-62 244.2 308 47.1
Dinv41443 Davidia involucrata HOM05D004469 ORTHO05D005429 9.4e-62 241.1 164 75.0
arahy.Tifrunner.gnm1.ann1.FNUG0A Arachis hypogaea HOM05D004469 ORTHO05D005429 2.7e-61 239.6 299 48.2
Duzib168G2148 Durio zibethinus HOM05D004469 ORTHO05D005429 6.1e-61 238.4 176 69.3
HPP92_003256 Vanilla planifolia HOM05D004469 ORTHO05D005429 1.0e-60 237.7 308 44.5
Actinidia14229 Actinidia chinensis HOM05D004469 ORTHO05D005429 2.3e-60 236.5 164 72.6
Eucgr.L03235 Eucalyptus grandis HOM05D004469 ORTHO05D005429 5.2e-60 235.3 171 70.2
Eucgr.L03187 Eucalyptus grandis HOM05D004469 ORTHO05D005429 1.5e-59 233.8 171 69.6
Potri.006G061500 Populus trichocarpa HOM05D004469 ORTHO05D005429 6.3e-58 228.4 164 70.1
RcHm_v2.0_Chr5g0016251 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-51 206.8 173 61.8
Zm00001eb068670 Zea mays HOM05D004469 ORTHO05D005429 1.7e-50 203.8 312 42.0
SEGI_05144 Sequoiadendron giganteum HOM05D004469 ORTHO05D005429 1.1e-49 201.1 307 40.4
FAN16G0997 Fragaria x ananassa HOM05D004469 ORTHO05D005429 3.1e-49 199.5 291 44.7
Mapoly0101s0042 Marchantia polymorpha HOM05D004469 ORTHO05D005429 1.9e-46 190.3 307 38.8
Nitab4.5_0010073g0010 Nicotiana tabacum HOM05D004469 ORTHO05D005429 3.6e-45 186.0 122 70.5
Pp3c3_18690 Physcomitrium patens HOM05D004469 ORTHO05D005429 8.8e-44 181.4 312 36.9
SMO367G0076 Selaginella moellendorffii HOM05D004469 ORTHO05D005429 8.8e-44 181.4 302 37.4
AagrBONN_evm.TU.Sc2ySwM_344.1954 Anthoceros agrestis HOM05D004469 ORTHO05D005429 2.2e-42 176.8 305 36.7
RcHm_v2.0_Chr1g0341141 Rosa chinensis HOM05D004469 ORTHO05D005429 8.3e-42 174.9 150 59.3
BcaC01g03128 Brassica carinata HOM05D004469 ORTHO05D005429 7.0e-41 171.8 123 67.5
RcHm_v2.0_Chr5g0061311 Rosa chinensis HOM05D004469 ORTHO05D005429 5.9e-40 168.7 123 67.5
arahy.Tifrunner.gnm1.ann1.CP8KSN Arachis hypogaea HOM05D004469 ORTHO05D005429 1.8e-36 157.1 297 39.4
RcHm_v2.0_Chr5g0016141 Rosa chinensis HOM05D004469 ORTHO05D005429 4.0e-36 156.0 110 70.9
Duzib168G2240 Durio zibethinus HOM05D004469 ORTHO05D005429 9.8e-35 151.4 297 38.7
RcHm_v2.0_Chr1g0314541 Rosa chinensis HOM05D004469 ORTHO05D005429 9.8e-35 151.4 111 68.5
RcHm_v2.0_Chr5g0079831 Rosa chinensis HOM05D004469 ORTHO05D005429 9.8e-35 151.4 204 45.6
arahy.Tifrunner.gnm1.ann1.WC6UXQ Arachis hypogaea HOM05D004469 ORTHO05D005429 4.9e-34 149.1 308 37.3
RcHm_v2.0_Chr5g0072041 Rosa chinensis HOM05D004469 ORTHO05D005429 7.3e-30 135.2 91 70.3
Eucgr.C04403 Eucalyptus grandis HOM05D004469 ORTHO05D005429 2.3e-28 130.2 174 46.0
CDE05G2521 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 2.7e-24 116.7 96 57.3
Cre03.g205650 Chlamydomonas reinhardtii HOM05D004469 ORTHO05D005429 1.4e-20 104.4 252 31.7
FAN28G2979 Fragaria x ananassa HOM05D004469 ORTHO05D005429 6.0e-16 89.0 59 74.6
Oeu028136.1 Olea europaea HOM05D004469 ORTHO05D005429 3.0e-15 86.7 103 52.4
CDE05G0946 Ceratophyllum demersum HOM05D004469 ORTHO05D005429 5.2e-12 75.9 114 42.1
RcHm_v2.0_Chr2g0147321 Rosa chinensis HOM05D004469 ORTHO05D005429 2.0e-11 73.9 98 45.9
Eucgr.E04270 Eucalyptus grandis HOM05D000097 ORTHO05D000041 1.7e-10 70.9 44 68.2
Prupe.8G069200 Prunus persica HOM05D004469 ORTHO05D005429 2.7e-08 63.5 62 56.5
CBR_g57083 Chara braunii HOM05D000019 ORTHO05D000048 8.6e-07 58.5 59 47.5
Aqoxy4G01419 Aquilegia oxysepala HOM05D004469 ORTHO05D005429 3.3e-06 56.6 120 31.7


User provided reference genes

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