Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G177400 Carya illinoinensis HOM05D005541 ORTHO05D006875 2.7e-174 615.1 298 100.0
QL02p090804 Quercus lobata HOM05D005541 ORTHO05D006875 7.0e-146 520.8 295 84.7
Cfa002261 Carpinus fangiana HOM05D005541 ORTHO05D006875 2.5e-143 512.3 293 84.6
Dinv36447 Davidia involucrata HOM05D005541 ORTHO05D006875 4.3e-135 485.0 295 80.0
TWI63G1467 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 3.4e-132 475.3 294 79.6
TWI63G0008 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.3e-131 473.4 294 79.3
Thecc.09G137600 Theobroma cacao HOM05D005541 ORTHO05D006875 1.9e-130 469.5 296 76.4
Cc06_g07640 Coffea canephora HOM05D005541 ORTHO05D006875 4.1e-130 468.4 300 75.7
Rhsim03G0253300 Rhododendron simsii HOM05D005541 ORTHO05D006875 1.2e-129 466.8 298 75.5
Manes.14G119600 Manihot esculenta HOM05D005541 ORTHO05D006875 4.6e-129 464.9 292 77.1
Ciclev10009016m.g Citrus clementina HOM05D005541 ORTHO05D006875 1.7e-128 463.0 298 75.8
TWI32G1342 Tripterygium wilfordii HOM05D005541 ORTHO05D006875 1.7e-128 463.0 283 79.2
GSVIVG01012859001 Vitis vinifera HOM05D005541 ORTHO05D006875 1.1e-127 460.3 298 74.5
vmacro06115 Vaccinium macrocarpon HOM05D005541 ORTHO05D006875 1.5e-127 459.9 273 79.5
Duzib168G0734 Durio zibethinus HOM05D005541 ORTHO05D006875 2.8e-126 455.7 283 77.7
Atru.chr7.2014 Acer truncatum HOM05D005541 ORTHO05D006875 3.6e-126 455.3 296 75.3
Cpa.g.sc46.69 Carica papaya HOM05D005541 ORTHO05D006875 5.2e-125 451.4 296 73.3
Lj6g0025347 Lotus japonicus HOM05D005541 ORTHO05D006875 5.2e-125 451.4 297 73.4
Gohir.A13G202000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 1.2e-124 450.3 276 77.5
Gorai.013G236700 Gossypium raimondii HOM05D005541 ORTHO05D006875 2.0e-124 449.5 276 77.5
Gohir.D13G207800 Gossypium hirsutum HOM05D005541 ORTHO05D006875 3.4e-124 448.7 276 77.5
RcHm_v2.0_Chr2g0087061 Rosa chinensis HOM05D005541 ORTHO05D006875 7.6e-124 447.6 297 74.7
Actinidia26358 Actinidia chinensis HOM05D005541 ORTHO05D006875 2.2e-123 446.0 269 78.8
Lalb_Chr11g0073101 Lupinus albus HOM05D005541 ORTHO05D006875 2.2e-123 446.0 284 73.9
ClCG06G011880 Citrullus lanatus HOM05D005541 ORTHO05D006875 4.9e-123 444.9 284 75.0
Potri.006G061600 Populus trichocarpa HOM05D005541 ORTHO05D006875 2.4e-122 442.6 294 74.1
Actinidia14228 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.2e-122 442.2 269 78.1
Medtr2g450740 Medicago truncatula HOM05D005541 ORTHO05D006875 5.4e-122 441.4 295 73.2
Gorai.004G109500 Gossypium raimondii HOM05D005541 ORTHO05D006875 7.1e-122 441.0 270 78.9
MD15G1162200 Malus domestica HOM05D005541 ORTHO05D006875 7.1e-122 441.0 291 73.5
HanXRQChr03g0063361 Helianthus annuus HOM05D005541 ORTHO05D006875 1.2e-121 440.3 295 72.2
FvH4_1g02000 Fragaria vesca HOM05D005541 ORTHO05D006875 2.7e-121 439.1 287 74.6
TAR100G0002 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.7e-121 439.1 295 70.8
TAR170G0003 Trochodendron aralioides HOM05D005541 ORTHO05D006875 2.7e-121 439.1 295 70.8
Lsat_1_v5_gn_7_46800 Lactuca sativa HOM05D005541 ORTHO05D006875 1.3e-120 436.8 286 73.1
PGR142G4414 Punica granatum HOM05D005541 ORTHO05D006875 1.3e-120 436.8 298 70.5
CANSAT11G2438 Cannabis sativa HOM05D005541 ORTHO05D006875 3.0e-120 435.6 281 73.7
FAN28G0031 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.9e-120 435.3 287 73.9
Glyma.15G198100 Glycine max HOM05D005541 ORTHO05D006875 3.9e-120 435.3 281 74.0
MELO3C010277.2 Cucumis melo HOM05D005541 ORTHO05D006875 5.1e-120 434.9 285 73.3
Potri.018G118200 Populus trichocarpa HOM05D005541 ORTHO05D006875 5.1e-120 434.9 282 74.5
Sabra06G0044200 Salix brachista HOM05D005541 ORTHO05D006875 6.6e-120 434.5 294 72.8
Ca_03100_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 1.9e-119 433.0 289 74.0
Lalb_Chr08g0233581 Lupinus albus HOM05D005541 ORTHO05D006875 1.9e-119 433.0 286 71.3
Sed0001591 Sechium edule HOM05D005541 ORTHO05D006875 1.9e-119 433.0 288 72.2
Haze_25444 Corylus avellana HOM05D005541 ORTHO05D006875 2.5e-119 432.6 343 66.2
Glyma.09G091600 Glycine max HOM05D005541 ORTHO05D006875 2.5e-119 432.6 281 73.7
FAN26G0160 Fragaria x ananassa HOM05D005541 ORTHO05D006875 3.3e-119 432.2 290 72.8
VMungo1309G2820 Vigna mungo HOM05D005541 ORTHO05D006875 5.6e-119 431.4 273 74.4
Gohir.A08G090600 Gossypium hirsutum HOM05D005541 ORTHO05D006875 7.3e-119 431.0 270 77.4
ECA240G1064 Erigeron canadensis HOM05D005541 ORTHO05D006875 9.6e-119 430.6 284 73.2
CsaV3_1G028340 Cucumis sativus L. HOM05D005541 ORTHO05D006875 1.2e-118 430.3 285 72.6
Aqoxy7G03592 Aquilegia oxysepala HOM05D005541 ORTHO05D006875 2.1e-118 429.5 281 73.0
Sed0021107 Sechium edule HOM05D005541 ORTHO05D006875 3.6e-118 428.7 278 73.0
arahy.Tifrunner.gnm1.ann1.9T6TW9 Arachis hypogaea HOM05D005541 ORTHO05D006875 4.7e-118 428.3 287 71.1
MD02G1018200 Malus domestica HOM05D005541 ORTHO05D006875 4.7e-118 428.3 274 75.2
Prupe.7G257600 Prunus persica HOM05D005541 ORTHO05D006875 4.7e-118 428.3 296 69.9
Solyc07g007380.4 Solanum lycopersicum HOM05D005541 ORTHO05D006875 8.1e-118 427.6 288 70.5
Sopen07g003450 Solanum pennellii HOM05D005541 ORTHO05D006875 1.1e-117 427.2 288 70.5
Nn8g39653 Nelumbo nucifera HOM05D005541 ORTHO05D006875 1.4e-117 426.8 286 71.7
Migut.J01236 Erythranthe guttata HOM05D005541 ORTHO05D006875 1.8e-117 426.4 295 69.8
Phvul.009G212200 Phaseolus vulgaris HOM05D005541 ORTHO05D006875 4.0e-117 425.2 294 70.4
arahy.Tifrunner.gnm1.ann1.H1LUDS Arachis hypogaea HOM05D005541 ORTHO05D006875 5.2e-117 424.9 287 70.7
HanXRQChr09g0241861 Helianthus annuus HOM05D005541 ORTHO05D006875 5.2e-117 424.9 290 71.0
Psat1g021320 Pisum sativum HOM05D005541 ORTHO05D006875 1.2e-116 423.7 289 70.2
PGSC0003DMG400030689 Solanum tuberosum HOM05D005541 ORTHO05D006875 2.2e-115 419.5 286 70.6
Peaxi162Scf00088g00520 Petunia axillaris HOM05D005541 ORTHO05D006875 1.9e-114 416.4 286 69.9
SGA_v2.0_scaffold45G17077 Striga asiatica HOM05D005541 ORTHO05D006875 9.3e-114 414.1 280 71.4
Duzib187G1717 Durio zibethinus HOM05D005541 ORTHO05D006875 6.0e-113 411.4 226 86.3
Nitab4.5_0002845g0020 Nicotiana tabacum HOM05D005541 ORTHO05D006875 3.0e-112 409.1 288 68.1
DCAR_009345 Daucus carota HOM05D005541 ORTHO05D006875 5.1e-112 408.3 284 71.8
CAN.G1281.6 Capsicum annuum HOM05D005541 ORTHO05D006875 1.1e-111 407.1 278 70.9
MSTRG.6077 Avicennia marina HOM05D005541 ORTHO05D006875 1.5e-111 406.8 259 75.7
Nitab4.5_0002286g0050 Nicotiana tabacum HOM05D005541 ORTHO05D006875 1.9e-111 406.4 292 67.5
Oeu012222.1 Olea europaea HOM05D005541 ORTHO05D006875 4.3e-111 405.2 279 70.6
AUR62020012 Chenopodium quinoa HOM05D005541 ORTHO05D006875 3.6e-110 402.1 261 72.8
Sc08g0006020 Simmondsia chinensis HOM05D005541 ORTHO05D006875 3.6e-110 402.1 267 71.5
Lj7A439T20 Lonicera japonica HOM05D005541 ORTHO05D006875 8.1e-110 401.0 235 82.1
AUR62011221 Chenopodium quinoa HOM05D005541 ORTHO05D006875 2.0e-108 396.4 291 65.6
Dinv41444 Davidia involucrata HOM05D005541 ORTHO05D006875 2.6e-108 396.0 230 80.9
Gohir.D08G101500 Gossypium hirsutum HOM05D005541 ORTHO05D006875 6.4e-107 391.3 270 73.0
THA.LOC104808948 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 1.2e-105 387.1 286 62.9
Hund09308 Selenicereus undatus HOM05D005541 ORTHO05D006875 3.9e-104 382.1 286 65.0
Gohir.D13G208000 Gossypium hirsutum HOM05D005541 ORTHO05D006875 4.8e-102 375.2 233 76.8
THA.LOC104815290 Tarenaya hassleriana HOM05D005541 ORTHO05D006875 5.3e-101 371.7 292 62.0
Eucgr.C00480 Eucalyptus grandis HOM05D005541 ORTHO05D006875 2.6e-100 369.4 286 65.7
COL.COLO4_33365 Corchorus olitorius HOM05D005541 ORTHO05D006875 2.2e-99 366.3 226 77.4
MBI15_g25760_MAGBIO Magnolia biondii HOM05D005541 ORTHO05D006875 5.5e-98 361.7 385 48.8
ATR0767G116 Amborella trichopoda HOM05D005541 ORTHO05D006875 9.3e-98 360.9 294 60.5
CSS0024399 Camellia sinensis var. sinensis HOM05D005541 ORTHO05D006875 2.1e-97 359.8 239 75.3
PSO478G5201 Papaver somniferum HOM05D005541 ORTHO05D006875 6.0e-97 358.2 263 63.9
PSO017G3833 Papaver somniferum HOM05D005541 ORTHO05D006875 2.5e-95 352.8 263 63.9
HPP92_020539 Vanilla planifolia HOM05D005541 ORTHO05D006875 7.4e-95 351.3 281 58.0
Ah.09g224130 Amaranthus hybridus HOM05D005541 ORTHO05D006875 4.8e-94 348.6 223 71.7
CDE02G2611 Ceratophyllum demersum HOM05D005541 ORTHO05D006875 2.4e-93 346.3 279 57.3
Actinidia38706 Actinidia chinensis HOM05D005541 ORTHO05D006875 3.8e-91 339.0 213 75.1
AT5G35080 Arabidopsis thaliana HOM05D005541 ORTHO05D006875 4.9e-91 338.6 273 60.4
EL10Ac8g18781 Beta vulgaris HOM05D005541 ORTHO05D006875 6.5e-91 338.2 232 67.7
BraA05t20138Z Brassica rapa HOM05D005541 ORTHO05D006875 9.3e-90 334.3 273 59.3
A05p11950 Brassica napus HOM05D005541 ORTHO05D006875 1.6e-89 333.6 273 59.3
BcaB02g10581 Brassica carinata HOM05D005541 ORTHO05D006875 6.0e-89 331.6 268 60.1
BcaC02g11442 Brassica carinata HOM05D005541 ORTHO05D006875 6.0e-89 331.6 273 59.0
C04p15500 Brassica napus HOM05D005541 ORTHO05D006875 6.0e-89 331.6 273 59.0
BolC4t23121H Brassica oleracea HOM05D005541 ORTHO05D006875 6.0e-89 331.6 273 59.0
BcaB01g03929 Brassica carinata HOM05D005541 ORTHO05D006875 3.9e-88 328.9 278 59.0
Carub.0007s3085 Capsella rubella HOM05D005541 ORTHO05D006875 8.7e-88 327.8 280 58.2
Sp4g15930 Schrenkiella parvula HOM05D005541 ORTHO05D006875 8.7e-88 327.8 273 59.0
Aa31LG10G11810 Aethionema arabicum HOM05D005541 ORTHO05D006875 1.1e-87 327.4 245 64.9
BolC3t14579H Brassica oleracea HOM05D005541 ORTHO05D006875 9.6e-87 324.3 275 58.5
Thhalv10002066m.g Eutrema salsugineum HOM05D005541 ORTHO05D006875 1.1e-85 320.9 272 57.7
C03p21960 Brassica napus HOM05D005541 ORTHO05D006875 4.1e-85 318.9 281 56.9
FAN19G0623 Fragaria x ananassa HOM05D005541 ORTHO05D006875 1.3e-83 313.9 209 73.7
Zm00001eb028460 Zea mays HOM05D005541 ORTHO05D006875 7.4e-79 298.1 290 53.4
Oeu028018.1 Olea europaea HOM05D005541 ORTHO05D006875 2.0e-76 290.0 245 59.6
Pp3c2_6810 Physcomitrium patens HOM05D005541 ORTHO05D006875 1.1e-74 284.3 252 55.6
CARHR217140 Cardamine hirsuta HOM05D005541 ORTHO05D006875 4.2e-74 282.3 217 62.2
BcaC01g05834 Brassica carinata HOM05D005541 ORTHO05D006875 1.7e-70 270.4 213 60.6
Pp3c1_27810 Physcomitrium patens HOM05D005541 ORTHO05D006875 7.7e-68 261.5 246 53.7
Mapoly0020s0022 Marchantia polymorpha HOM05D005541 ORTHO05D006875 2.0e-60 236.9 274 47.1
Zm00001eb136970 Zea mays HOM05D005541 ORTHO05D006875 1.7e-59 233.8 225 52.9
SMO174G0227 Selaginella moellendorffii HOM05D005541 ORTHO05D006875 5.0e-59 232.3 240 50.0
unitig_0.g507 Utricularia gibba HOM05D005541 ORTHO05D006875 4.0e-56 222.6 165 64.8
AagrBONN_evm.TU.Sc2ySwM_228.2742 Anthoceros agrestis HOM05D005541 ORTHO05D006875 5.2e-56 222.2 226 47.3
Oeu028135.2 Olea europaea HOM05D005541 ORTHO05D006875 1.2e-52 211.1 181 61.9
SEGI_36543 Sequoiadendron giganteum HOM05D005541 ORTHO05D006875 1.1e-42 177.9 136 64.0
CBR_g45403 Chara braunii HOM05D005541 ORTHO05D006875 4.7e-41 172.6 286 36.7
Os06g0644800 Oryza sativa ssp. japonica HOM05D005541 ORTHO05D006875 1.5e-34 151.0 131 55.0
Ca_27153_v3 Cicer arietinum L. HOM05D005541 ORTHO05D006875 6.4e-30 135.6 88 77.3
MCO11G854 Micromonas commoda HOM05D005541 ORTHO05D006875 8.6e-27 125.2 214 34.1
RcHm_v2.0_Chr1g0314561 Rosa chinensis HOM05D005541 ORTHO05D006875 5.8e-23 112.5 72 72.2
Ca_24194_v3 Cicer arietinum L. HOM05D000002 ORTHO05D000001 8.3e-22 108.6 112 54.5
Cre06.g257900 Chlamydomonas reinhardtii HOM05D005541 ORTHO05D006875 1.3e-19 101.3 158 36.7
RcHm_v2.0_Chr5g0069501 Rosa chinensis HOM05D005541 ORTHO05D006875 1.3e-19 101.3 58 75.9
PRCOL_00001292 Prasinoderma coloniale HOM05D005541 ORTHO05D006875 1.1e-18 98.2 158 34.8
unitig_0.g506 Utricularia gibba HOM05D001054 ORTHO05D007110 1.5e-15 87.8 66 63.6
HanXRQChr03g0068961 Helianthus annuus HOM05D005541 ORTHO05D006875 5.8e-15 85.9 48 83.3
RcHm_v2.0_Chr7g0241391 Rosa chinensis HOM05D005541 ORTHO05D006875 6.4e-14 82.4 43 79.1
FvH4_1g02060 Fragaria vesca HOM05D005541 ORTHO05D006875 3.6e-09 66.6 99 42.4
Cfa024351 Carpinus fangiana HOM05D005541 ORTHO05D124727 7.6e-07 58.9 311 22.8
CARHR217150 Cardamine hirsuta HOM05D005541 ORTHO05D006875 2.2e-06 57.4 55 47.3


User provided reference genes

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