Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G176700 Carya illinoinensis HOM05D005237 ORTHO05D006189 6.0e-97 357.5 175 100.0
CiPaw.03G250600 Carya illinoinensis HOM05D005237 ORTHO05D006189 4.6e-89 331.3 175 92.6
QL02p090325 Quercus lobata HOM05D005237 ORTHO05D006189 1.8e-88 329.3 174 92.0
Haze_25466 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 90.9
Haze_25470 Corylus avellana HOM05D005237 ORTHO05D006189 1.1e-87 326.6 175 90.9
Duzib150G0783 Durio zibethinus HOM05D005237 ORTHO05D006189 9.7e-87 323.6 175 89.7
Eucgr.C04376 Eucalyptus grandis HOM05D005237 ORTHO05D006189 1.3e-86 323.2 175 89.1
Prupe.7G251500 Prunus persica HOM05D005237 ORTHO05D006189 4.8e-86 321.2 174 89.1
Actinidia07336 Actinidia chinensis HOM05D005237 ORTHO05D006189 3.1e-85 318.5 175 88.6
Dinv41456 Davidia involucrata HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 88.0
GSVIVG01012837001 Vitis vinifera HOM05D005237 ORTHO05D006189 4.1e-85 318.2 175 88.6
MD02G1020300 Malus domestica HOM05D005237 ORTHO05D006189 5.3e-85 317.8 174 87.4
vmacro07739 Vaccinium macrocarpon HOM05D005237 ORTHO05D006189 5.3e-85 317.8 174 88.5
Glyma.17G108800 Glycine max HOM05D005237 ORTHO05D006189 6.9e-85 317.4 175 86.9
Ciclev10009685m.g Citrus clementina HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 88.6
Lalb_Chr12g0198311 Lupinus albus HOM05D005237 ORTHO05D006189 9.0e-85 317.0 175 85.7
Cpa.g.sc277.15 Carica papaya HOM05D005237 ORTHO05D006189 1.2e-84 316.6 175 88.6
Lj7A437T44 Lonicera japonica HOM05D005237 ORTHO05D006189 1.5e-84 316.2 173 88.4
MD15G1163100 Malus domestica HOM05D005237 ORTHO05D006189 1.5e-84 316.2 174 87.9
TWI32G1192 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.5e-84 316.2 175 86.9
Oeu000523.1 Olea europaea HOM05D005237 ORTHO05D006189 2.0e-84 315.8 175 86.3
Gohir.A08G089300 Gossypium hirsutum HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 88.0
Rhsim01G0059600 Rhododendron simsii HOM05D005237 ORTHO05D006189 3.4e-84 315.1 175 88.0
Lalb_Chr13g0301391 Lupinus albus HOM05D005237 ORTHO05D006189 4.5e-84 314.7 175 86.3
Glyma.13G162500 Glycine max HOM05D005237 ORTHO05D006189 5.9e-84 314.3 175 86.3
Lj4g0017742 Lotus japonicus HOM05D005237 ORTHO05D006189 5.9e-84 314.3 175 86.9
PGR102G2022 Punica granatum HOM05D005237 ORTHO05D006189 5.9e-84 314.3 172 88.4
Medtr4g115900 Medicago truncatula HOM05D005237 ORTHO05D006189 1.0e-83 313.5 172 87.8
Phvul.003G171200 Phaseolus vulgaris HOM05D005237 ORTHO05D006189 1.0e-83 313.5 175 85.7
CsaV3_2G003270 Cucumis sativus L. HOM05D005237 ORTHO05D006189 1.3e-83 313.2 175 86.3
ClCG11G003410 Citrullus lanatus HOM05D005237 ORTHO05D006189 2.2e-83 312.4 175 86.3
Potri.018G123100 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.9e-83 312.0 173 87.3
Nitab4.5_0002267g0030 Nicotiana tabacum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 175 85.1
PGSC0003DMG400030712 Solanum tuberosum HOM05D005237 ORTHO05D006189 5.0e-83 311.2 175 84.6
FvH4_3g33280 Fragaria vesca HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 86.8
FAN11G2421 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 86.8
Peaxi162Scf00088g00918 Petunia axillaris HOM05D005237 ORTHO05D006189 6.5e-83 310.8 174 86.2
Sabra18G0104800 Salix brachista HOM05D005237 ORTHO05D006189 6.5e-83 310.8 173 87.3
Gorai.004G108300 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.1e-82 310.1 174 87.4
SGA_v2.0_scaffold37G14721 Striga asiatica HOM05D005237 ORTHO05D006189 1.1e-82 310.1 175 86.3
arahy.Tifrunner.gnm1.ann1.E2H6AC Arachis hypogaea HOM05D005237 ORTHO05D006189 1.4e-82 309.7 175 85.7
EL10Ac8g18779 Beta vulgaris HOM05D005237 ORTHO05D006189 1.4e-82 309.7 173 85.5
Psat0s3428g0040 Pisum sativum HOM05D005237 ORTHO05D006189 3.2e-82 308.5 172 86.0
FAN21G0596 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.2e-82 308.1 174 86.2
Sc18g0000220 Simmondsia chinensis HOM05D005237 ORTHO05D006189 4.2e-82 308.1 173 85.0
CANSAT11G1632 Cannabis sativa HOM05D005237 ORTHO05D006189 5.5e-82 307.8 175 84.6
Migut.K00410 Erythranthe guttata HOM05D005237 ORTHO05D006189 5.5e-82 307.8 172 86.0
Sopen07g003620 Solanum pennellii HOM05D005237 ORTHO05D006189 5.5e-82 307.8 175 83.4
HanXRQChr06g0180531 Helianthus annuus HOM05D005237 ORTHO05D006189 7.2e-82 307.4 173 84.4
Solyc07g007630.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 7.2e-82 307.4 175 83.4
unitig_748.g7174 Utricularia gibba HOM05D005237 ORTHO05D006189 7.2e-82 307.4 174 85.6
Manes.14G117900 Manihot esculenta HOM05D005237 ORTHO05D006189 9.4e-82 307.0 173 86.1
Nn8g40617 Nelumbo nucifera HOM05D005237 ORTHO05D006189 1.2e-81 306.6 172 85.5
Atru.chr7.1980 Acer truncatum HOM05D005237 ORTHO05D006189 1.6e-81 306.2 174 86.2
Ah.09g224420 Amaranthus hybridus HOM05D005237 ORTHO05D006189 2.1e-81 305.8 173 84.4
ECA236G1442 Erigeron canadensis HOM05D005237 ORTHO05D006189 2.1e-81 305.8 173 85.0
Potri.006G063400 Populus trichocarpa HOM05D005237 ORTHO05D006189 2.1e-81 305.8 173 85.5
Sed0005481 Sechium edule HOM05D005237 ORTHO05D006189 2.1e-81 305.8 175 84.6
Hma1.2p1_0343F.1_g130850 Hydrangea macrophylla HOM05D005237 ORTHO05D006189 2.7e-81 305.4 173 85.5
SalBow1G1295 Salvia bowleyana HOM05D005237 ORTHO05D006189 2.7e-81 305.4 175 85.7
AT1G60430 Arabidopsis thaliana HOM05D005237 ORTHO05D006189 3.6e-81 305.1 172 84.9
DCAR_009333 Daucus carota HOM05D005237 ORTHO05D006189 3.6e-81 305.1 172 84.9
Lsat_1_v5_gn_8_61340 Lactuca sativa HOM05D005237 ORTHO05D006189 7.9e-81 303.9 173 83.2
Hund09300 Selenicereus undatus HOM05D005237 ORTHO05D006189 1.0e-80 303.5 173 84.4
Aqoxy7G00028 Aquilegia oxysepala HOM05D005237 ORTHO05D006189 1.4e-80 303.1 175 84.0
Aa31LG2G10030 Aethionema arabicum HOM05D005237 ORTHO05D006189 1.8e-80 302.8 172 84.3
Carub.0002s0491 Capsella rubella HOM05D005237 ORTHO05D006189 1.8e-80 302.8 172 84.3
CARHR052620 Cardamine hirsuta HOM05D005237 ORTHO05D006189 1.8e-80 302.8 172 84.3
Sed0006539 Sechium edule HOM05D005237 ORTHO05D006189 1.8e-80 302.8 175 82.9
HPP92_021894 Vanilla planifolia HOM05D005237 ORTHO05D006189 3.9e-80 301.6 172 84.3
MSTRG.26338 Avicennia marina HOM05D005237 ORTHO05D006189 5.1e-80 301.2 175 84.6
Cc07_g18400 Coffea canephora HOM05D005237 ORTHO05D006189 5.1e-80 301.2 175 85.1
RcHm_v2.0_Chr5g0060671 Rosa chinensis HOM05D005237 ORTHO05D006189 5.1e-80 301.2 174 83.9
Nitab4.5_0000704g0070 Nicotiana tabacum HOM05D005237 ORTHO05D006189 6.7e-80 300.8 190 78.9
THA.LOC104815299 Tarenaya hassleriana HOM05D005237 ORTHO05D006189 6.7e-80 300.8 172 83.7
CDE07G1573 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 8.8e-80 300.4 174 82.2
Thhalv10023668m.g Eutrema salsugineum HOM05D005237 ORTHO05D006189 8.8e-80 300.4 171 84.2
AL2G16270 Arabidopsis lyrata HOM05D005237 ORTHO05D006189 1.5e-79 299.7 172 83.7
Sp2g04330 Schrenkiella parvula HOM05D005237 ORTHO05D006189 2.5e-79 298.9 171 83.6
SEGI_28631 Sequoiadendron giganteum HOM05D005237 ORTHO05D006189 7.4e-79 297.4 171 83.6
BcaB07g31213 Brassica carinata HOM05D005237 ORTHO05D006189 9.7e-79 297.0 172 82.6
BcaC04g22225 Brassica carinata HOM05D005237 ORTHO05D006189 9.7e-79 297.0 172 82.6
C09p21860 Brassica napus HOM05D002152 ORTHO05D006189 3.7e-78 295.0 171 82.5
BraA09t37380Z Brassica rapa HOM05D002152 ORTHO05D006189 3.7e-78 295.0 171 82.5
MBI14_g10734_MAGBIO Magnolia biondii HOM05D005237 ORTHO05D006189 3.7e-78 295.0 181 81.2
A09p17560 Brassica napus HOM05D002152 ORTHO05D006189 8.2e-78 293.9 171 81.9
Zm00001eb150940 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 171 81.9
Zm00001eb238940 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 172 81.4
Zm00001eb238960 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 171 81.9
Zm00001eb238970 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 171 81.9
Zm00001eb438640 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 171 81.9
Zm00001eb438650 Zea mays HOM05D005237 ORTHO05D006189 8.2e-78 293.9 171 81.9
CSS0004544 Camellia sinensis var. sinensis HOM05D005237 ORTHO05D006189 1.1e-77 293.5 226 68.1
Gohir.A05G013700 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.1e-77 291.6 171 81.3
Gohir.D05G014800 Gossypium hirsutum HOM05D005237 ORTHO05D006189 4.1e-77 291.6 171 81.3
SHI03217 Sapria himalayana HOM05D005237 ORTHO05D006189 1.0e-75 287.0 168 81.5
Gorai.009G014900 Gossypium raimondii HOM05D005237 ORTHO05D006189 1.3e-75 286.6 173 80.3
Dinv36460 Davidia involucrata HOM05D005237 ORTHO05D006189 1.9e-74 282.7 159 86.8
Gohir.D08G100500 Gossypium hirsutum HOM05D005237 ORTHO05D006189 2.1e-73 279.3 158 88.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 7.2e-66 254.2 149 85.2
CDE04G0420 Ceratophyllum demersum HOM05D005237 ORTHO05D006189 1.0e-64 250.4 151 80.8
Mapoly0002s0013 Marchantia polymorpha HOM05D005237 ORTHO05D006189 5.2e-64 248.1 176 67.0
SMO356G0108 Selaginella moellendorffii HOM05D005237 ORTHO05D006189 8.8e-64 247.3 174 66.1
Pp3c3_23320 Physcomitrium patens HOM05D005237 ORTHO05D006189 1.1e-63 246.9 174 64.9
Pp3c10_12220 Physcomitrium patens HOM05D005237 ORTHO05D006189 2.6e-63 245.7 174 64.9
BolC9t55091H Brassica oleracea HOM05D002152 ORTHO05D002737 1.3e-62 243.4 146 81.5
MELO3C004473.2 Cucumis melo HOM05D005237 ORTHO05D006189 3.7e-62 241.9 138 86.2
PSO675G7544 Papaver somniferum HOM05D005237 ORTHO05D006189 1.7e-59 233.0 141 80.9
Thecc.09G135400 Theobroma cacao HOM05D005237 ORTHO05D006189 5.5e-58 228.0 173 68.8
TAR626G0602 Trochodendron aralioides HOM05D005237 ORTHO05D006189 1.2e-57 226.9 134 85.1
COL.COLO4_15552 Corchorus olitorius HOM05D005237 ORTHO05D006189 1.6e-57 226.5 130 85.4
VMungo1215G1009 Vigna mungo HOM05D005237 ORTHO05D006189 1.0e-56 223.8 136 80.1
TWI38G2392 Tripterygium wilfordii HOM05D005237 ORTHO05D006189 1.4e-56 223.4 128 84.4
AUR62011203 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-56 223.0 127 86.6
AUR62013284 Chenopodium quinoa HOM05D005237 ORTHO05D006189 1.8e-56 223.0 127 86.6
Lsat_1_v5_gn_7_44340 Lactuca sativa HOM05D005237 ORTHO05D006189 4.0e-56 221.9 176 60.8
TPR.G39824 Trifolium pratense HOM05D005237 ORTHO05D006189 5.2e-56 221.5 127 82.7
Zm00001eb238980 Zea mays HOM05D005237 ORTHO05D006189 6.8e-56 221.1 132 81.1
CAN.G1382.4 Capsicum annuum HOM05D005237 ORTHO05D006189 8.8e-56 220.7 144 76.4
Duzib187G1805 Durio zibethinus HOM05D005237 ORTHO05D006189 3.4e-55 218.8 130 83.1
MD10G1159100 Malus domestica HOM05D005237 ORTHO05D006189 3.7e-54 215.3 130 80.8
Os02g0235000 Oryza sativa ssp. japonica HOM05D005237 ORTHO05D006189 1.1e-53 213.8 127 80.3
FAN25G0883 Fragaria x ananassa HOM05D005237 ORTHO05D006189 3.8e-51 205.3 163 67.5
VMungo0251G3112 Vigna mungo HOM05D005237 ORTHO05D006189 8.8e-48 194.1 147 70.1
Sopen02g003910 Solanum pennellii HOM05D005237 ORTHO05D006189 1.2e-47 193.7 127 73.2
Peaxi162Scf00113g00061 Petunia axillaris HOM05D005237 ORTHO05D006189 5.7e-47 191.4 119 79.0
Solyc02g014540.3 Solanum lycopersicum HOM05D005237 ORTHO05D006189 1.2e-44 183.7 126 69.8
Ca_21648_v3 Cicer arietinum L. HOM05D005237 ORTHO05D006189 1.8e-40 169.9 131 68.7
FAN16G0279 Fragaria x ananassa HOM05D005237 ORTHO05D006189 4.6e-36 155.2 92 83.7
FAN21G3302 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.3e-35 152.9 89 85.4
Eucgr.I02126 Eucalyptus grandis HOM05D005237 ORTHO05D006189 2.9e-35 152.5 81 88.9
FAN17G0595 Fragaria x ananassa HOM05D005237 ORTHO05D006189 8.6e-35 151.0 107 72.9
FAN28G2985 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.1e-34 150.6 95 80.0
FAN17G0540 Fragaria x ananassa HOM05D005237 ORTHO05D006189 2.5e-34 149.4 101 78.2
Sabra06G0046100 Salix brachista HOM05D005237 ORTHO05D006189 1.2e-33 147.1 93 79.6
FAN02G0796 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.6e-33 146.7 103 71.8
FAN20G0460 Fragaria x ananassa HOM05D005237 ORTHO05D006189 6.2e-33 144.8 99 72.7
PGSC0003DMG400003270 Solanum tuberosum HOM05D005237 ORTHO05D006189 8.0e-33 144.4 93 74.2
Medtr0320s0040 Medicago truncatula HOM05D005237 ORTHO05D006189 7.5e-31 137.9 88 75.0
Eucgr.L01822 Eucalyptus grandis HOM05D005237 ORTHO05D006189 4.6e-28 128.6 80 80.0
Aa31LG9G5450 Aethionema arabicum HOM05D005237 ORTHO05D006189 7.8e-28 127.9 99 65.7
Cre09.g397950 Chlamydomonas reinhardtii HOM05D005237 ORTHO05D006189 9.5e-26 120.9 192 35.4
Duzib168G1377 Durio zibethinus HOM05D005237 ORTHO05D006189 1.2e-25 120.6 73 82.2
Zm00001eb302220 Zea mays HOM05D005237 ORTHO05D006189 1.2e-25 120.6 67 80.6
FAN20G1904 Fragaria x ananassa HOM05D005237 ORTHO05D006189 1.8e-24 116.7 77 79.2
TAR625G1190 Trochodendron aralioides HOM05D005237 ORTHO05D006189 6.4e-22 108.2 90 63.3
Cc06_g07800 Coffea canephora HOM05D005237 ORTHO05D006189 8.6e-19 97.8 57 80.7
Lsat_1_v5_gn_2_45981 Lactuca sativa HOM05D005237 ORTHO05D003224 4.6e-12 75.5 39 82.1


User provided reference genes

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