Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G175300 Carya illinoinensis HOM05D004876 ORTHO05D005488 6.7e-51 203.8 105 100.0
CiPaw.04G175400 Carya illinoinensis HOM05D004876 ORTHO05D005488 2.8e-49 198.4 104 97.1
CiPaw.02G093900 Carya illinoinensis HOM05D004876 ORTHO05D005488 4.8e-49 197.6 104 96.2
QL08p065087 Quercus lobata HOM05D004876 ORTHO05D005488 6.7e-43 177.2 107 85.0
Prupe.2G265600 Prunus persica HOM05D004876 ORTHO05D005488 8.8e-43 176.8 104 84.6
Duzib114G0677 Durio zibethinus HOM05D004876 ORTHO05D005488 1.5e-42 176.0 104 84.6
Ca_29868_v3 Cicer arietinum L. HOM05D000260 ORTHO05D000318 9.7e-42 173.3 104 83.7
Lj1g0004349 Lotus japonicus HOM05D004876 ORTHO05D005488 9.7e-42 173.3 104 85.6
Atru.chr12.194 Acer truncatum HOM05D004876 ORTHO05D005488 2.8e-41 171.8 103 82.5
MD01G1169400 Malus domestica HOM05D004876 ORTHO05D005488 2.8e-41 171.8 104 80.8
TWI09G0651 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 4.8e-41 171.0 109 81.7
RcHm_v2.0_Chr1g0372561 Rosa chinensis HOM05D004876 ORTHO05D005488 1.5e-39 166.0 104 79.8
Sabra19G0074800 Salix brachista HOM05D004876 ORTHO05D005488 2.6e-39 165.2 106 80.2
MBI15_g39395_MAGBIO Magnolia biondii HOM05D004876 ORTHO05D005488 3.4e-39 164.9 106 81.1
Phvul.009G042700 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 3.4e-39 164.9 104 79.8
TAR636G2293 Trochodendron aralioides HOM05D004876 ORTHO05D005488 3.4e-39 164.9 104 80.8
Lalb_Chr11g0067701 Lupinus albus HOM05D004876 ORTHO05D005488 4.5e-39 164.5 104 80.8
Potri.019G061200 Populus trichocarpa HOM05D004876 ORTHO05D005488 4.5e-39 164.5 106 81.1
ClCG07G004830 Citrullus lanatus HOM05D004876 ORTHO05D005488 5.9e-39 164.1 104 77.9
Cpa.g.sc128.23 Carica papaya HOM05D004876 ORTHO05D005488 7.7e-39 163.7 104 81.7
VMungo1309G0380 Vigna mungo HOM05D004876 ORTHO05D005488 1.0e-38 163.3 104 77.9
CsaV3_5G010740 Cucumis sativus L. HOM05D004876 ORTHO05D005488 1.3e-38 162.9 104 76.9
Glyma.06G141500 Glycine max HOM05D004876 ORTHO05D005488 2.2e-38 162.2 104 78.8
Phvul.005G185900 Phaseolus vulgaris HOM05D004876 ORTHO05D005488 2.2e-38 162.2 104 78.8
ATR0733G227 Amborella trichopoda HOM05D004876 ORTHO05D005488 2.9e-38 161.8 104 76.9
Psat5g069360 Pisum sativum HOM05D004876 ORTHO05D005488 5.0e-38 161.0 103 77.7
CANSAT64G1352 Cannabis sativa HOM05D004876 ORTHO05D005488 8.5e-38 160.2 104 76.9
CANSAT64G2122 Cannabis sativa HOM05D004876 ORTHO05D005488 8.5e-38 160.2 104 76.9
FAN12G2601 Fragaria x ananassa HOM05D004876 ORTHO05D005488 1.1e-37 159.8 104 76.0
Sed0020097 Sechium edule HOM05D004876 ORTHO05D005488 1.9e-37 159.1 104 76.0
FvH4_7g26120 Fragaria vesca HOM05D004876 ORTHO05D005488 2.5e-37 158.7 104 75.0
FAN06G0183 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-37 158.7 104 75.0
FAN10G2920 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.5e-37 158.7 104 75.0
TPR.G28952 Trifolium pratense HOM05D004876 ORTHO05D005488 2.5e-37 158.7 103 78.6
TPR.G13975 Trifolium pratense HOM05D004876 ORTHO05D005488 3.2e-37 158.3 103 78.6
AUR62008150 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.2e-37 157.9 103 77.7
AUR62028732 Chenopodium quinoa HOM05D004876 ORTHO05D005488 4.2e-37 157.9 103 77.7
MELO3C020110.2 Cucumis melo HOM05D004876 ORTHO05D005488 4.2e-37 157.9 104 76.0
ATR1127G178 Amborella trichopoda HOM05D004876 ORTHO05D005488 7.2e-37 157.1 103 75.7
THA.LOC104824370 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 7.2e-37 157.1 101 77.2
FAN03G2458 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.7e-36 155.2 104 74.0
PGR142G2846 Punica granatum HOM05D004876 ORTHO05D005488 2.7e-36 155.2 104 73.1
PSO170G6098 Papaver somniferum HOM05D004876 ORTHO05D005488 1.0e-35 153.3 104 74.0
PSO675G4155 Papaver somniferum HOM05D004876 ORTHO05D005488 2.3e-35 152.1 104 73.1
TWI53G0120 Tripterygium wilfordii HOM05D004876 ORTHO05D005488 3.9e-35 151.4 104 76.0
FAN17G0734 Fragaria x ananassa HOM05D004876 ORTHO05D005488 2.6e-34 148.7 104 71.2
FvH4_4g04970 Fragaria vesca HOM05D004876 ORTHO05D005488 3.3e-34 148.3 123 64.2
Thecc.10G185000 Theobroma cacao HOM05D004876 ORTHO05D005488 4.4e-34 147.9 104 73.1
Os03g0114200 Oryza sativa ssp. japonica HOM05D004876 ORTHO05D005488 9.7e-34 146.7 103 68.9
HPP92_015433 Vanilla planifolia HOM05D004876 ORTHO05D005488 2.2e-33 145.6 99 71.7
Zm00001eb000910 Zea mays HOM05D004876 ORTHO05D005488 2.8e-33 145.2 104 71.2
Thhalv10017311m.g Eutrema salsugineum HOM05D004876 ORTHO05D005488 4.8e-33 144.4 104 68.3
AL4G34450 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.3e-33 144.1 104 69.2
AL4G38670 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 6.3e-33 144.1 104 69.2
Carub.0004s2308 Capsella rubella HOM05D004876 ORTHO05D005488 6.3e-33 144.1 104 69.2
CARHR135880 Cardamine hirsuta HOM05D004876 ORTHO05D005488 6.3e-33 144.1 104 69.2
Sp4g23100 Schrenkiella parvula HOM05D004876 ORTHO05D005488 6.3e-33 144.1 104 69.2
BcaB06g29175 Brassica carinata HOM05D004876 ORTHO05D005488 8.2e-33 143.7 104 68.3
A04p31160 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-33 143.7 104 68.3
C04p68560 Brassica napus HOM05D004876 ORTHO05D005488 8.2e-33 143.7 104 68.3
BraA04t18571Z Brassica rapa HOM05D004876 ORTHO05D005488 8.2e-33 143.7 104 68.3
BolC4t28355H Brassica oleracea HOM05D004876 ORTHO05D005488 1.1e-32 143.3 104 68.3
Aa31LG3G1350 Aethionema arabicum HOM05D004876 ORTHO05D005488 1.4e-32 142.9 103 69.9
AT2G40780 Arabidopsis thaliana HOM05D004876 ORTHO05D005488 1.4e-32 142.9 104 68.3
Dinv21858 Davidia involucrata HOM05D004876 ORTHO05D005488 1.4e-32 142.9 104 71.2
CDE07G1038 Ceratophyllum demersum HOM05D004876 ORTHO05D005488 2.4e-32 142.1 104 71.2
EL10Ac5g10661 Beta vulgaris HOM05D004876 ORTHO05D005488 7.0e-32 140.6 104 70.2
vmacro06902 Vaccinium macrocarpon HOM05D004876 ORTHO05D005488 2.0e-31 139.0 104 68.3
Aqoxy2G01672 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 5.9e-31 137.5 106 65.1
Migut.F01232 Erythranthe guttata HOM05D004876 ORTHO05D005488 5.9e-31 137.5 103 68.0
Aqoxy5G02193 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.7e-31 137.1 93 68.8
Aqoxy6G02070 Aquilegia oxysepala HOM05D004876 ORTHO05D005488 7.7e-31 137.1 106 66.0
Haze_17370 Corylus avellana HOM05D004876 ORTHO05D005488 8.5e-30 133.7 104 67.3
arahy.Tifrunner.gnm1.ann1.58ULDB Arachis hypogaea HOM05D004876 ORTHO05D005488 4.2e-29 131.3 104 68.3
GSVIVG01038577001 Vitis vinifera HOM05D004876 ORTHO05D005488 4.2e-29 131.3 103 66.0
Duzib106G1237 Durio zibethinus HOM05D004876 ORTHO05D005488 5.5e-29 131.0 104 67.3
Manes.10G044800 Manihot esculenta HOM05D004876 ORTHO05D005488 9.4e-29 130.2 104 66.3
Lj8A52T23 Lonicera japonica HOM05D004876 ORTHO05D005488 1.6e-28 129.4 103 65.0
COL.COLO4_19475 Corchorus olitorius HOM05D004876 ORTHO05D005488 2.1e-28 129.0 104 66.3
Nn2g10267 Nelumbo nucifera HOM05D004876 ORTHO05D005488 4.7e-28 127.9 80 80.0
SEGI_18121 Sequoiadendron giganteum HOM05D004876 ORTHO05D005488 6.1e-28 127.5 103 61.2
Gohir.D10G184200 Gossypium hirsutum HOM05D004876 ORTHO05D005488 1.8e-27 125.9 104 64.4
Gorai.011G206400 Gossypium raimondii HOM05D004876 ORTHO05D005488 1.8e-27 125.9 104 64.4
Gohir.A10G177600 Gossypium hirsutum HOM05D004876 ORTHO05D005488 2.3e-27 125.6 104 64.4
Eucgr.G03147 Eucalyptus grandis HOM05D004876 ORTHO05D005488 8.8e-27 123.6 104 63.5
Rhsim03G0153600 Rhododendron simsii HOM05D004876 ORTHO05D005488 8.8e-27 123.6 104 62.5
BcaB01g03515 Brassica carinata HOM05D004876 ORTHO05D005488 1.5e-26 122.9 104 60.6
Rhsim04G0113200 Rhododendron simsii HOM05D004876 ORTHO05D005488 1.5e-26 122.9 94 69.1
Ciclev10032334m.g Citrus clementina HOM05D004876 ORTHO05D005488 2.0e-26 122.5 103 62.1
THA.LOC104803220 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 2.6e-26 122.1 104 61.5
Medtr3g093790 Medicago truncatula HOM05D004876 ORTHO05D005488 2.2e-25 119.0 104 61.5
CSS0007534 Camellia sinensis var. sinensis HOM05D004876 ORTHO05D005488 2.8e-25 118.6 104 59.6
Peaxi162Scf00073g02225 Petunia axillaris HOM05D004876 ORTHO05D005488 2.8e-25 118.6 104 60.6
ECA247G1702 Erigeron canadensis HOM05D004876 ORTHO05D008274 3.7e-25 118.2 103 61.2
Lj6g0009237 Lotus japonicus HOM05D004876 ORTHO05D005488 3.7e-25 118.2 104 62.5
Dinv37250 Davidia involucrata HOM05D004876 ORTHO05D005488 4.8e-25 117.9 104 60.6
HanXRQChr14g0460541 Helianthus annuus HOM05D004876 ORTHO05D005488 4.8e-25 117.9 104 60.6
Nitab4.5_0006356g0050 Nicotiana tabacum HOM05D004876 ORTHO05D005488 4.8e-25 117.9 104 58.7
PGR142G0395 Punica granatum HOM05D004876 ORTHO05D005488 6.3e-25 117.5 104 57.7
Nitab4.5_0000171g0270 Nicotiana tabacum HOM05D004876 ORTHO05D005488 1.4e-24 116.3 104 58.7
Lsat_1_v5_gn_5_104800 Lactuca sativa HOM05D004876 ORTHO05D005488 1.8e-24 115.9 103 60.2
Migut.A00831 Erythranthe guttata HOM05D004876 ORTHO05D005488 2.4e-24 115.5 101 60.4
Sopen03g025590 Solanum pennellii HOM05D004876 ORTHO05D005488 5.3e-24 114.4 104 57.7
PGSC0003DMG400020604 Solanum tuberosum HOM05D004876 ORTHO05D005488 5.3e-24 114.4 104 57.7
Ca_29506_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 7.0e-24 114.0 103 61.2
THA.LOC104808402 Tarenaya hassleriana HOM05D004876 ORTHO05D005488 1.2e-23 113.2 65 84.6
Sc10g0003050 Simmondsia chinensis HOM05D004876 ORTHO05D005488 1.6e-23 112.8 68 77.9
TPR.G24790 Trifolium pratense HOM05D004876 ORTHO05D005488 2.0e-23 112.5 76 75.0
Ah.11g051130 Amaranthus hybridus HOM05D004876 ORTHO05D005488 5.9e-23 110.9 102 57.8
SGA_v2.0_scaffold2G00887 Striga asiatica HOM05D004876 ORTHO05D005488 1.7e-22 109.4 103 56.3
unitig_736.g22953 Utricularia gibba HOM05D004876 ORTHO05D005488 1.7e-22 109.4 103 55.3
CAN.G1229.8 Capsicum annuum HOM05D004876 ORTHO05D005488 3.8e-22 108.2 104 54.8
Nitab4.5_0008902g0030 Nicotiana tabacum HOM05D004876 ORTHO05D005488 8.5e-22 107.1 104 56.7
PGSC0003DMG400011645 Solanum tuberosum HOM05D004876 ORTHO05D005488 2.5e-21 105.5 101 53.5
Ca_16858_v3 Cicer arietinum L. HOM05D004876 ORTHO05D005488 3.2e-21 105.1 120 53.3
Solyc05g052180.3 Solanum lycopersicum HOM05D004876 ORTHO05D005488 3.2e-21 105.1 101 53.5
Sopen05g030710 Solanum pennellii HOM05D004876 ORTHO05D005488 5.5e-21 104.4 101 52.5
Lsat_1_v5_gn_2_126741 Lactuca sativa HOM05D004876 ORTHO05D005488 7.2e-21 104.0 101 56.4
MSTRG.8381 Avicennia marina HOM05D004876 ORTHO05D005488 2.1e-20 102.4 103 54.4
Cc02_g05210 Coffea canephora HOM05D004876 ORTHO05D005488 2.1e-20 102.4 104 52.9
SalBow7G3110 Salvia bowleyana HOM05D004876 ORTHO05D005488 2.7e-20 102.1 103 53.4
Mapoly0014s0200 Marchantia polymorpha HOM05D004876 ORTHO05D005488 3.6e-20 101.7 103 49.5
Oeu006067.1 Olea europaea HOM05D004876 ORTHO05D005488 3.6e-20 101.7 104 50.0
BcaC02g12879 Brassica carinata HOM05D004876 ORTHO05D005488 4.7e-20 101.3 65 73.8
BcaB05g22749 Brassica carinata HOM05D004876 ORTHO05D005488 8.0e-20 100.5 65 73.8
Peaxi162Scf00167g01129 Petunia axillaris HOM05D004876 ORTHO05D005488 2.6e-18 95.5 75 62.7
Pp3c16_8280 Physcomitrium patens HOM05D004876 ORTHO05D005488 3.4e-18 95.1 107 47.7
AagrBONN_evm.TU.Sc2ySwM_368.2679 Anthoceros agrestis HOM05D004876 ORTHO05D005488 1.7e-14 82.8 103 43.7
Actinidia13638 Actinidia chinensis HOM05D004876 ORTHO05D005488 1.9e-13 79.3 46 80.4
Nn1g06656 Nelumbo nucifera HOM05D004876 ORTHO05D005488 4.0e-11 71.6 53 71.7
Cre03.g155800 Chlamydomonas reinhardtii HOM05D004876 ORTHO05D005488 5.2e-11 71.2 81 44.4
AL4G14440 Arabidopsis lyrata HOM05D004876 ORTHO05D005488 8.8e-11 70.5 62 53.2
HanXRQChr07g0204961 Helianthus annuus HOM05D004876 ORTHO05D005488 1.4e-08 63.2 41 73.2
MCO11G196 Micromonas commoda HOM05D004876 ORTHO05D005488 2.7e-07 58.9 102 33.3


User provided reference genes

Program Settings