Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G169500 Carya illinoinensis HOM05D009305 ORTHO05D010439 5.6e-40 167.2 84 100.0
Haze_25626 Corylus avellana HOM05D003010 ORTHO05D010439 8.6e-25 116.7 86 76.7
Cfa003337 Carpinus fangiana HOM05D003010 ORTHO05D010439 1.4e-22 109.4 87 74.7
QL02p087437 Quercus lobata HOM05D009305 ORTHO05D010439 5.2e-22 107.5 79 74.7
TAR625G0712 Trochodendron aralioides HOM05D003010 ORTHO05D010439 1.1e-19 99.8 81 64.2
Nn8g39368 Nelumbo nucifera HOM05D003010 ORTHO05D010439 1.2e-18 96.3 81 60.5
DCAR_009212 Daucus carota HOM05D000639 ORTHO05D005966 1.6e-18 95.9 81 55.6
Atru.chr7.1234 Acer truncatum HOM05D009305 ORTHO05D010439 3.5e-18 94.7 88 62.5
Prupe.7G238200 Prunus persica HOM05D009305 ORTHO05D010439 4.6e-18 94.4 87 60.9
Potri.008G015800 Populus trichocarpa HOM05D003010 ORTHO05D010439 1.3e-17 92.8 82 62.2
Ciclev10010147m.g Citrus clementina HOM05D003010 ORTHO05D010439 8.6e-17 90.1 91 62.6
Rhsim01G0078400 Rhododendron simsii HOM05D003010 ORTHO05D010439 1.5e-16 89.4 89 55.1
Potri.008G015100 Populus trichocarpa HOM05D003010 ORTHO05D010439 5.6e-16 87.4 82 62.2
Manes.11G101800 Manihot esculenta HOM05D009305 ORTHO05D010439 9.5e-16 86.7 81 56.8
FAN26G0439 Fragaria x ananassa HOM05D009305 ORTHO05D010439 3.6e-15 84.7 87 55.2
Glyma.17G117900 Glycine max HOM05D003010 ORTHO05D010439 8.1e-15 83.6 88 51.1
RcHm_v2.0_Chr2g0089271 Rosa chinensis HOM05D009305 ORTHO05D010439 1.4e-14 82.8 87 54.0
Cc06_g08930 Coffea canephora HOM05D018231 ORTHO05D010439 1.2e-13 79.7 81 53.1
Lsat_1_v5_gn_5_97941 Lactuca sativa HOM05D003010 ORTHO05D003623 1.5e-13 79.3 83 57.8
Aqoxy7G02055 Aquilegia oxysepala HOM05D003010 ORTHO05D003623 2.0e-13 79.0 81 50.6
MBI04_g29855_MAGBIO Magnolia biondii HOM05D005914 ORTHO05D007361 2.6e-13 78.6 81 51.9
FAN19G2542 Fragaria x ananassa HOM05D009305 ORTHO05D010439 3.4e-13 78.2 86 54.7
TAR629G3508 Trochodendron aralioides HOM05D003010 ORTHO05D003623 3.4e-13 78.2 82 51.2
Eucgr.C01116 Eucalyptus grandis HOM05D009305 ORTHO05D010439 9.9e-13 76.6 82 54.9
Gohir.A08G165900 Gossypium hirsutum HOM05D003010 ORTHO05D003623 9.9e-13 76.6 86 52.3
Gorai.004G194100 Gossypium raimondii HOM05D003010 ORTHO05D003623 9.9e-13 76.6 86 52.3
PSO339G5114 Papaver somniferum HOM05D003010 ORTHO05D010439 9.9e-13 76.6 88 47.7
PSO801G0586 Papaver somniferum HOM05D003010 ORTHO05D003623 9.9e-13 76.6 88 47.7
Thecc.09G121000 Theobroma cacao HOM05D029830 ORTHO05D010439 9.9e-13 76.6 85 51.8
Gohir.D08G184800 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.3e-12 76.3 86 52.3
Sed0015404 Sechium edule HOM05D009305 ORTHO05D010439 2.2e-12 75.5 84 52.4
COL.COLO4_21678 Corchorus olitorius HOM05D003010 ORTHO05D003623 3.8e-12 74.7 83 50.6
CsaV3_1G029730 Cucumis sativus L. HOM05D003010 ORTHO05D010439 4.9e-12 74.3 82 52.4
Sc18g0000820 Simmondsia chinensis HOM05D003010 ORTHO05D010439 8.4e-12 73.6 85 50.6
HanXRQChr10g0316761 Helianthus annuus HOM05D003010 ORTHO05D003623 1.4e-11 72.8 83 54.2
TAR636G0256 Trochodendron aralioides HOM05D003010 ORTHO05D003623 1.4e-11 72.8 82 48.8
Duzib205G1418 Durio zibethinus HOM05D003010 ORTHO05D003623 3.2e-11 71.6 88 48.9
Thecc.03G243800 Theobroma cacao HOM05D003010 ORTHO05D003623 3.2e-11 71.6 86 47.7
Lj4g0006068 Lotus japonicus HOM05D003010 ORTHO05D010439 7.1e-11 70.5 88 48.9
Lj4g0025656 Lotus japonicus HOM05D003010 ORTHO05D010439 7.1e-11 70.5 88 48.9
Phvul.003G161400 Phaseolus vulgaris HOM05D009305 ORTHO05D010439 1.2e-10 69.7 82 48.8
CDE01G0248 Ceratophyllum demersum HOM05D003010 ORTHO05D003623 1.6e-10 69.3 83 44.6
Nn1g00825 Nelumbo nucifera HOM05D003010 ORTHO05D003623 3.5e-10 68.2 88 44.3
A02p05990 Brassica napus HOM05D009305 ORTHO05D010439 7.8e-10 67.0 86 48.8
BraA02t05551Z Brassica rapa HOM05D009305 ORTHO05D010439 7.8e-10 67.0 86 48.8
CSS0003493 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.3e-09 66.2 89 49.4
CAN.G761.23 Capsicum annuum HOM05D003010 ORTHO05D003623 1.3e-09 66.2 82 46.3
TWI81G0439 Tripterygium wilfordii HOM05D003010 ORTHO05D003623 1.3e-09 66.2 82 48.8
COL.COLO4_35181 Corchorus olitorius HOM05D018231 ORTHO05D010439 1.7e-09 65.9 96 47.9
Nn6g33810 Nelumbo nucifera HOM05D003010 ORTHO05D003623 1.7e-09 65.9 94 41.5
ECA234G2671 Erigeron canadensis HOM05D003010 ORTHO05D010439 2.3e-09 65.5 83 51.8
AL6G31590 Arabidopsis lyrata HOM05D009305 ORTHO05D010439 3.0e-09 65.1 86 47.7
Atru.chr1.925 Acer truncatum HOM05D003010 ORTHO05D003623 3.9e-09 64.7 84 42.9
A03p09790 Brassica napus HOM05D009305 ORTHO05D010439 5.1e-09 64.3 86 47.7
Medtr1g090200 Medicago truncatula HOM05D003010 ORTHO05D003623 5.1e-09 64.3 82 41.5
Sc07g0009120 Simmondsia chinensis HOM05D003010 ORTHO05D003623 5.1e-09 64.3 86 45.3
PGSC0003DMG400026255 Solanum tuberosum HOM05D003010 ORTHO05D003623 5.1e-09 64.3 82 43.9
Actinidia01040 Actinidia chinensis HOM05D000255 ORTHO05D000935 6.6e-09 63.9 85 43.5
C03p11370 Brassica napus HOM05D009305 ORTHO05D010439 6.6e-09 63.9 86 47.7
Cc02_g04820 Coffea canephora HOM05D003010 ORTHO05D003623 6.6e-09 63.9 85 41.2
Solyc08g078060.3 Solanum lycopersicum HOM05D003010 ORTHO05D003623 6.6e-09 63.9 82 43.9
Sopen08g026560 Solanum pennellii HOM05D003010 ORTHO05D003623 6.6e-09 63.9 82 43.9
Peaxi162Scf00446g00412 Petunia axillaris HOM05D003010 ORTHO05D003623 8.7e-09 63.5 82 43.9
CARHR192790 Cardamine hirsuta HOM05D009305 ORTHO05D010439 1.1e-08 63.2 86 48.8
Migut.A01045 Erythranthe guttata HOM05D003010 ORTHO05D003623 1.1e-08 63.2 82 45.1
BcaB05g22883 Brassica carinata HOM05D009305 ORTHO05D010439 1.5e-08 62.8 86 47.7
CSS0005375 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.5e-08 62.8 90 50.0
CSS0010853 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.5e-08 62.8 90 50.0
CSS0012144 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 1.5e-08 62.8 90 50.0
Nitab4.5_0009955g0020 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.5e-08 62.8 82 45.1
THA.LOC104811040 Tarenaya hassleriana HOM05D009305 ORTHO05D010439 1.5e-08 62.8 81 46.9
AT5G20045 Arabidopsis thaliana HOM05D009305 ORTHO05D010439 1.9e-08 62.4 86 46.5
BcaC03g13728 Brassica carinata HOM05D009305 ORTHO05D010439 1.9e-08 62.4 86 46.5
BolC2t07005H Brassica oleracea HOM05D009305 ORTHO05D010439 1.9e-08 62.4 86 46.5
BolC3t13610H Brassica oleracea HOM05D009305 ORTHO05D010439 1.9e-08 62.4 86 46.5
Rhsim04G0160200 Rhododendron simsii HOM05D003010 ORTHO05D003623 1.9e-08 62.4 82 43.9
GSVIVG01007344001 Vitis vinifera HOM05D003010 ORTHO05D003623 1.9e-08 62.4 83 45.8
PSO063G3783 Papaver somniferum HOM05D003010 ORTHO05D003623 2.5e-08 62.0 82 43.9
Hund14501 Selenicereus undatus HOM05D003010 ORTHO05D003623 2.5e-08 62.0 82 45.1
GSVIVG01013867001 Vitis vinifera HOM05D003010 ORTHO05D003623 2.5e-08 62.0 82 37.8
BraA03t10294Z Brassica rapa HOM05D009305 ORTHO05D010439 3.3e-08 61.6 86 46.5
Carub.0004s1739 Capsella rubella HOM05D003010 ORTHO05D003623 3.3e-08 61.6 86 46.5
Thhalv10015177m.g Eutrema salsugineum HOM05D009305 ORTHO05D010439 3.3e-08 61.6 86 45.3
Lalb_Chr13g0302051 Lupinus albus HOM05D009305 ORTHO05D010439 3.3e-08 61.6 86 47.7
BcaB01g04814 Brassica carinata HOM05D009305 ORTHO05D010439 4.3e-08 61.2 86 46.5
AUR62033453 Chenopodium quinoa HOM05D003010 ORTHO05D010439 4.3e-08 61.2 81 45.7
Actinidia31768 Actinidia chinensis HOM05D003010 ORTHO05D003623 7.3e-08 60.5 85 38.8
Peaxi162Scf00167g01022 Petunia axillaris HOM05D003010 ORTHO05D003623 7.3e-08 60.5 92 39.1
Nitab4.5_0000500g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 9.6e-08 60.1 82 43.9
Nitab4.5_0002236g0070 Nicotiana tabacum HOM05D003010 ORTHO05D003623 1.6e-07 59.3 91 38.5
Hund11331 Selenicereus undatus HOM05D003010 ORTHO05D003623 1.6e-07 59.3 93 44.1
SGA_v2.0_scaffold60G20833 Striga asiatica HOM05D003010 ORTHO05D003623 1.6e-07 59.3 85 38.8
CSS0046948 Camellia sinensis var. sinensis HOM05D018231 ORTHO05D010439 2.1e-07 58.9 93 45.2
Nitab4.5_0002211g0010 Nicotiana tabacum HOM05D003010 ORTHO05D003623 2.1e-07 58.9 91 38.5
PSO782G2859 Papaver somniferum HOM05D003010 ORTHO05D003623 2.1e-07 58.9 82 42.7
Sc01g0008150 Simmondsia chinensis HOM05D003010 ORTHO05D003623 2.1e-07 58.9 89 42.7
Glyma.10G193700 Glycine max HOM05D003010 ORTHO05D003623 2.8e-07 58.5 84 39.3
Lj8C48T14 Lonicera japonica HOM05D003010 ORTHO05D003623 2.8e-07 58.5 86 41.9
Manes.02G043601 Manihot esculenta HOM05D003010 ORTHO05D003623 2.8e-07 58.5 82 45.1
VMungo0720G1826 Vigna mungo HOM05D002495 ORTHO05D003623 2.8e-07 58.5 83 42.2
Glyma.20G196700 Glycine max HOM05D003010 ORTHO05D003623 3.6e-07 58.2 84 39.3
Phvul.007G138100 Phaseolus vulgaris HOM05D003010 ORTHO05D003623 3.6e-07 58.2 83 41.0
Prupe.2G271700 Prunus persica HOM05D003010 ORTHO05D003623 3.6e-07 58.2 88 38.6
vmacro00038 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 3.6e-07 58.2 82 41.5
vmacro09926 Vaccinium macrocarpon HOM05D003010 ORTHO05D003623 3.6e-07 58.2 84 39.3
Haze_07981 Corylus avellana HOM05D003010 ORTHO05D003623 4.7e-07 57.8 83 44.6
Dinv21689 Davidia involucrata HOM05D003010 ORTHO05D003623 4.7e-07 57.8 82 45.1
Gohir.A03G005500 Gossypium hirsutum HOM05D003010 ORTHO05D003623 4.7e-07 57.8 88 44.3
Manes.01G086500 Manihot esculenta HOM05D003010 ORTHO05D003623 4.7e-07 57.8 82 42.7
SalBow3G0012 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.7e-07 57.8 87 39.1
SalBow3G1605 Salvia bowleyana HOM05D003010 ORTHO05D003623 4.7e-07 57.8 87 39.1
Hma1.2p1_1014F.1_g248010 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 6.2e-07 57.4 91 38.5
Hma1.2p1_1305F.1_g274559 Hydrangea macrophylla HOM05D003010 ORTHO05D003623 6.2e-07 57.4 91 38.5
Prupe.5G059800 Prunus persica HOM05D003010 ORTHO05D003623 6.2e-07 57.4 87 39.1
Thhalv10026660m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 8.1e-07 57.0 86 39.5
arahy.Tifrunner.gnm1.ann1.0EDZ2A Arachis hypogaea HOM05D009305 ORTHO05D010439 1.1e-06 56.6 90 42.2
Gohir.D03G167000 Gossypium hirsutum HOM05D003010 ORTHO05D003623 1.1e-06 56.6 88 44.3
HanXRQChr08g0229131 Helianthus annuus HOM05D003010 ORTHO05D003623 1.1e-06 56.6 83 48.2
Sed0025535 Sechium edule HOM05D003010 ORTHO05D003623 1.1e-06 56.6 85 37.6
EL10Ac5g12296 Beta vulgaris HOM05D003010 ORTHO05D003623 1.4e-06 56.2 88 40.9
Ca_10413_v3 Cicer arietinum L. HOM05D003010 ORTHO05D000523 1.4e-06 56.2 89 38.2
Lsat_1_v5_gn_4_126000 Lactuca sativa HOM05D003010 ORTHO05D003623 1.4e-06 56.2 84 41.7
COL.COLO4_37328 Corchorus olitorius HOM05D000255 ORTHO05D000935 1.8e-06 55.8 83 39.8
Dinv16875 Davidia involucrata HOM05D003010 ORTHO05D003623 2.4e-06 55.5 89 38.2
Migut.F00533 Erythranthe guttata HOM05D003010 ORTHO05D003623 2.4e-06 55.5 85 38.8
Dinv28854 Davidia involucrata HOM05D003010 ORTHO05D003623 3.1e-06 55.1 85 41.2
Rhsim09G0189200 Rhododendron simsii HOM05D003010 ORTHO05D003623 3.1e-06 55.1 88 36.4
RcHm_v2.0_Chr7g0204931 Rosa chinensis HOM05D003010 ORTHO05D003623 3.1e-06 55.1 95 38.9
Aa31LG1G14180 Aethionema arabicum HOM05D009305 ORTHO05D010439 4.0e-06 54.7 83 42.2
Carub.0006s1842 Capsella rubella HOM05D009305 ORTHO05D010439 4.0e-06 54.7 82 41.5
MELO3C017634.2 Cucumis melo HOM05D003010 ORTHO05D003623 4.0e-06 54.7 86 36.0
Duzib205G1260 Durio zibethinus HOM05D003010 ORTHO05D003623 4.0e-06 54.7 82 37.8
Migut.D02016 Erythranthe guttata HOM05D003010 ORTHO05D010439 4.0e-06 54.7 90 42.2
Thhalv10017475m.g Eutrema salsugineum HOM05D003010 ORTHO05D003623 4.0e-06 54.7 87 44.8
Lsat_1_v5_gn_2_127061 Lactuca sativa HOM05D003010 ORTHO05D003623 4.0e-06 54.7 90 43.3
MD07G1247700 Malus domestica HOM05D003010 ORTHO05D003623 4.0e-06 54.7 88 36.4
CiPaw.11G070300 Carya illinoinensis HOM05D003010 ORTHO05D003623 5.2e-06 54.3 84 41.7
Gohir.A08G239500 Gossypium hirsutum HOM05D029830 ORTHO05D010439 5.2e-06 54.3 92 43.5
Gorai.003G176600 Gossypium raimondii HOM05D003010 ORTHO05D003623 5.2e-06 54.3 88 43.2
HanXRQChr14g0461131 Helianthus annuus HOM05D003010 ORTHO05D003623 5.2e-06 54.3 89 42.7
MD04G1050500 Malus domestica HOM05D003010 ORTHO05D003623 5.2e-06 54.3 91 36.3
Thecc.03G147400 Theobroma cacao HOM05D003010 ORTHO05D003623 5.2e-06 54.3 82 39.0
SGA_v2.0_scaffold90G27813 Striga asiatica HOM05D009305 ORTHO05D010439 6.9e-06 53.9 91 44.0
C03p22900 Brassica napus HOM05D003010 ORTHO05D003623 9.0e-06 53.5 89 42.7
Carub.0007s2449 Capsella rubella HOM05D003010 ORTHO05D003623 9.0e-06 53.5 90 40.0
ClCG07G017110 Citrullus lanatus HOM05D003010 ORTHO05D003623 9.0e-06 53.5 89 38.2
Migut.F01206 Erythranthe guttata HOM05D003010 ORTHO05D003623 9.0e-06 53.5 82 37.8
FvH4_5g20070 Fragaria vesca HOM05D003010 ORTHO05D003623 9.0e-06 53.5 94 37.2
FAN18G3981 Fragaria x ananassa HOM05D003010 ORTHO05D003623 9.0e-06 53.5 94 37.2


User provided reference genes

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