Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G164300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.7e-66 256.1 157 100.0
Haze_25712 Corylus avellana HOM05D005853 ORTHO05D007308 1.1e-36 157.1 162 71.0
QL02p085450 Quercus lobata HOM05D005853 ORTHO05D007308 6.5e-34 147.9 155 65.8
Cpa.g.sc23.111 Carica papaya HOM05D005853 ORTHO05D007308 5.5e-25 118.2 142 66.9
CSS0011641 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 3.6e-24 115.5 164 57.9
ClCG06G008520 Citrullus lanatus HOM05D005853 ORTHO05D007308 4.7e-24 115.2 156 57.7
Dinv41601 Davidia involucrata HOM05D005853 ORTHO05D007308 4.7e-24 115.2 160 60.0
Ciclev10009718m.g Citrus clementina HOM05D005853 ORTHO05D007308 6.1e-24 114.8 150 54.0
CSS0003127 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 8.0e-24 114.4 159 57.9
Gohir.D05G024400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.0e-23 112.5 128 54.7
Gorai.009G024500 Gossypium raimondii HOM05D005853 ORTHO05D007308 4.0e-23 112.1 158 58.2
BcaC06g36242 Brassica carinata HOM05D005853 ORTHO05D007308 1.2e-22 110.5 123 55.3
C07p06090 Brassica napus HOM05D005853 ORTHO05D007308 1.2e-22 110.5 123 55.3
BolC7t41022H Brassica oleracea HOM05D005853 ORTHO05D007308 1.2e-22 110.5 123 55.3
Manes.03G020200 Manihot esculenta HOM05D005853 ORTHO05D007308 1.2e-22 110.5 136 52.9
BcaB03g16471 Brassica carinata HOM05D005853 ORTHO05D007308 2.0e-22 109.8 128 57.0
Manes.16G116400 Manihot esculenta HOM05D005853 ORTHO05D007308 2.6e-22 109.4 164 57.9
A06p34130 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-22 109.0 84 65.5
A07p03810 Brassica napus HOM05D005853 ORTHO05D007308 3.4e-22 109.0 123 54.5
BraA06t26346Z Brassica rapa HOM05D005853 ORTHO05D007308 3.4e-22 109.0 84 65.5
TWI34G0492 Tripterygium wilfordii HOM05D005853 ORTHO05D007308 4.4e-22 108.6 128 50.8
BraA07t28175Z Brassica rapa HOM05D005853 ORTHO05D007308 9.8e-22 107.5 127 55.9
Glyma.08G205900 Glycine max HOM05D005853 ORTHO05D007308 9.8e-22 107.5 57 94.7
TAR624G1380 Trochodendron aralioides HOM05D005853 ORTHO05D007308 9.8e-22 107.5 155 57.4
C03p58060 Brassica napus HOM05D005853 ORTHO05D007308 2.2e-21 106.3 93 64.5
BolC3t18080H Brassica oleracea HOM05D005853 ORTHO05D007308 2.2e-21 106.3 93 64.5
BcaC01g02942 Brassica carinata HOM05D005853 ORTHO05D007308 2.8e-21 105.9 64 78.1
Gohir.A05G022800 Gossypium hirsutum HOM05D005853 ORTHO05D007308 2.8e-21 105.9 128 55.5
VMungo0331G1451 Vigna mungo HOM05D005853 ORTHO05D007308 2.8e-21 105.9 57 87.7
Gohir.D05G024300 Gossypium hirsutum HOM05D005853 ORTHO05D007308 3.7e-21 105.5 128 55.5
Phvul.010G149900 Phaseolus vulgaris HOM05D005853 ORTHO05D007308 3.7e-21 105.5 57 87.7
Carub.0003s3118 Capsella rubella HOM05D005853 ORTHO05D007308 4.8e-21 105.1 63 77.8
Gohir.A05G022900 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.3e-21 104.8 159 56.6
Gorai.009G024400 Gossypium raimondii HOM05D005853 ORTHO05D007308 6.3e-21 104.8 129 55.8
Potri.018G079700 Populus trichocarpa HOM05D005853 ORTHO05D007308 6.3e-21 104.8 128 51.6
THA.LOC104808760 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 1.1e-20 104.0 129 52.7
AT2G17240 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 2.4e-20 102.8 126 54.0
THA.LOC104804586 Tarenaya hassleriana HOM05D005853 ORTHO05D007308 4.1e-20 102.1 126 49.2
Gohir.A08G241100 Gossypium hirsutum HOM05D005853 ORTHO05D007308 7.0e-20 101.3 129 50.4
Lsat_1_v5_gn_7_40661 Lactuca sativa HOM05D005853 ORTHO05D007308 1.6e-19 100.1 127 47.2
COL.COLO4_34918 Corchorus olitorius HOM05D005853 ORTHO05D007308 2.0e-19 99.8 159 52.8
ECA240G1876 Erigeron canadensis HOM05D005853 ORTHO05D007308 2.7e-19 99.4 128 49.2
Aa31LG8G14610 Aethionema arabicum HOM05D005853 ORTHO05D007308 5.9e-19 98.2 115 52.2
AL3G50100 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 5.9e-19 98.2 126 51.6
Oeu033499.2 Olea europaea HOM05D005853 ORTHO05D007308 5.9e-19 98.2 105 64.8
Atru.chr7.1347 Acer truncatum HOM05D005853 ORTHO05D007308 1.0e-18 97.4 111 53.2
Sp3g30580 Schrenkiella parvula HOM05D005853 ORTHO05D007308 1.7e-18 96.7 133 50.4
HanXRQChr09g0239771 Helianthus annuus HOM05D005853 ORTHO05D007308 2.9e-18 95.9 125 52.8
Migut.I00880 Erythranthe guttata HOM05D005853 ORTHO05D007308 5.0e-18 95.1 121 45.5
TAR636G2025 Trochodendron aralioides HOM05D005853 ORTHO05D007308 5.0e-18 95.1 156 54.5
MSTRG.22678 Avicennia marina HOM05D005853 ORTHO05D007308 6.5e-18 94.7 127 52.0
CiPaw.03G232300 Carya illinoinensis HOM05D005853 ORTHO05D007308 1.1e-17 94.0 80 86.2
Lj3g0010943 Lotus japonicus HOM05D005853 ORTHO05D007308 1.1e-17 94.0 45 93.3
Aqoxy7G03791 Aquilegia oxysepala HOM05D005853 ORTHO05D007308 3.3e-17 92.4 135 51.1
Duzib150G0727 Durio zibethinus HOM05D005853 ORTHO05D007308 5.5e-17 91.7 57 77.2
GSVIVG01015393001 Vitis vinifera HOM05D005853 ORTHO05D007308 5.5e-17 91.7 52 88.5
Ah.01g021430 Amaranthus hybridus HOM05D005853 ORTHO05D007308 7.2e-17 91.3 116 48.3
Peaxi162Scf00329g00432 Petunia axillaris HOM05D005853 ORTHO05D007308 7.2e-17 91.3 142 52.8
MBI13_g01620_MAGBIO Magnolia biondii HOM05D005853 ORTHO05D007308 1.6e-16 90.1 134 59.7
MELO3C025336.2 Cucumis melo HOM05D005853 ORTHO05D007308 2.1e-16 89.7 173 49.7
DCAR_028712 Daucus carota HOM05D005181 ORTHO05D006086 2.1e-16 89.7 81 60.5
Thhalv10022893m.g Eutrema salsugineum HOM05D005853 ORTHO05D007308 2.1e-16 89.7 130 48.5
Psat7g250480 Pisum sativum HOM05D005853 ORTHO05D007308 2.1e-16 89.7 56 76.8
SGA_v2.0_scaffold5G02572 Striga asiatica HOM05D005853 ORTHO05D007308 2.1e-16 89.7 126 50.8
Sopen04g003890 Solanum pennellii HOM05D005853 ORTHO05D007308 2.8e-16 89.4 80 58.8
Pp3c2_3480 Physcomitrium patens HOM05D005853 ORTHO05D007308 3.6e-16 89.0 50 80.0
PGR102G0312 Punica granatum HOM05D005853 ORTHO05D007308 4.7e-16 88.6 138 47.1
Thecc.09G110800 Theobroma cacao HOM05D005853 ORTHO05D007308 4.7e-16 88.6 133 49.6
FAN26G1381 Fragaria x ananassa HOM05D000050 ORTHO05D009634 6.1e-16 88.2 64 73.4
Gorai.010G070700 Gossypium raimondii HOM05D005853 ORTHO05D007308 6.1e-16 88.2 60 78.3
MSTRG.11072 Avicennia marina HOM05D005853 ORTHO05D007308 1.0e-15 87.4 120 48.3
Glyma.07G005500 Glycine max HOM05D005853 ORTHO05D007308 1.0e-15 87.4 55 83.6
Gohir.A06G062400 Gossypium hirsutum HOM05D005853 ORTHO05D007308 1.0e-15 87.4 50 82.0
Sed0019935 Sechium edule HOM05D005853 ORTHO05D007308 1.4e-15 87.0 154 51.3
Carub.0003s2483 Capsella rubella HOM05D005853 ORTHO05D007308 1.8e-15 86.7 53 79.2
FvH4_1g04830 Fragaria vesca HOM05D000050 ORTHO05D009634 1.8e-15 86.7 60 75.0
Prupe.7G230800 Prunus persica HOM05D005853 ORTHO05D007308 1.8e-15 86.7 57 75.4
CDE04G2734 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.0e-15 85.5 57 77.2
Duzib187G1793 Durio zibethinus HOM05D005853 ORTHO05D007308 4.0e-15 85.5 115 47.8
Cc04_g03260 Coffea canephora HOM05D005853 ORTHO05D007308 6.8e-15 84.7 48 79.2
Gohir.D06G060700 Gossypium hirsutum HOM05D005853 ORTHO05D007308 6.8e-15 84.7 129 48.1
MD02G1047200 Malus domestica HOM05D005853 ORTHO05D007308 6.8e-15 84.7 112 51.8
GSVIVG01017090001 Vitis vinifera HOM05D005853 ORTHO05D007308 6.8e-15 84.7 78 79.5
FAN19G0481 Fragaria x ananassa HOM05D000050 ORTHO05D009634 8.9e-15 84.3 59 74.6
RcHm_v2.0_Chr2g0090481 Rosa chinensis HOM05D005853 ORTHO05D007308 8.9e-15 84.3 63 73.0
Nitab4.5_0001983g0030 Nicotiana tabacum HOM05D005853 ORTHO05D007308 1.2e-14 84.0 156 50.6
Eucgr.J02982 Eucalyptus grandis HOM05D005853 ORTHO05D007308 2.0e-14 83.2 45 82.2
CsaV3_1G030480 Cucumis sativus L. HOM05D005853 ORTHO05D007308 2.6e-14 82.8 109 51.4
AL3G39990 Arabidopsis lyrata HOM05D005853 ORTHO05D007308 3.4e-14 82.4 48 79.2
Nn2g11754 Nelumbo nucifera HOM05D005853 ORTHO05D007308 3.4e-14 82.4 157 49.7
AT3G24506 Arabidopsis thaliana HOM05D005853 ORTHO05D007308 4.4e-14 82.0 106 49.1
Pp3c1_36270 Physcomitrium patens HOM05D005853 ORTHO05D007308 4.4e-14 82.0 126 45.2
Medtr4g012810 Medicago truncatula HOM05D005853 ORTHO05D007308 7.5e-14 81.3 45 82.2
Solyc04g008710.4 Solanum lycopersicum HOM05D005853 ORTHO05D007308 1.3e-13 80.5 107 46.7
Lalb_Chr22g0351311 Lupinus albus HOM05D005853 ORTHO05D007308 1.7e-13 80.1 81 75.3
Nitab4.5_0000129g0220 Nicotiana tabacum HOM05D005853 ORTHO05D007308 3.7e-13 79.0 115 47.0
PGR102G2925 Punica granatum HOM05D005853 ORTHO05D007308 3.7e-13 79.0 42 81.0
CDE07G2010 Ceratophyllum demersum HOM05D005853 ORTHO05D007308 4.9e-13 78.6 43 79.1
CBR_g48216 Chara braunii HOM05D005853 ORTHO05D007308 4.9e-13 78.6 54 72.2
Hma1.2p1_1455F.1_g284500 Hydrangea macrophylla HOM05D005853 ORTHO05D007308 4.9e-13 78.6 68 63.2
Sed0009205 Sechium edule HOM05D005853 ORTHO05D007308 4.9e-13 78.6 79 75.9
CANSAT56G2684 Cannabis sativa HOM05D005853 ORTHO05D007308 6.3e-13 78.2 69 60.9
Thecc.06G089900 Theobroma cacao HOM05D005853 ORTHO05D007308 8.3e-13 77.8 87 66.7
CSS0027693 Camellia sinensis var. sinensis HOM05D005853 ORTHO05D007308 1.1e-12 77.4 42 81.0
ATR0724G055 Amborella trichopoda HOM05D005853 ORTHO05D007308 1.4e-12 77.0 126 46.8
Oeu024066.2 Olea europaea HOM05D005853 ORTHO05D007308 1.4e-12 77.0 211 40.8
Prupe.3G069800 Prunus persica HOM05D005853 ORTHO05D007308 3.1e-12 75.9 42 81.0
Os02g0614200 Oryza sativa ssp. japonica HOM05D005853 ORTHO05D007308 5.4e-12 75.1 54 66.7
PSO210G7285 Papaver somniferum HOM05D005853 ORTHO05D007308 5.4e-12 75.1 43 76.7
BcaB08g34716 Brassica carinata HOM05D005853 ORTHO05D007308 9.2e-12 74.3 117 48.7
unitig_22.g5469 Utricularia gibba HOM05D005853 ORTHO05D007308 9.2e-12 74.3 41 80.5
arahy.Tifrunner.gnm1.ann1.84WEKL Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 66 62.1
arahy.Tifrunner.gnm1.ann1.JCT5CV Arachis hypogaea HOM05D005853 ORTHO05D007308 1.2e-11 73.9 66 62.1
SalBow2G1576 Salvia bowleyana HOM05D005853 ORTHO05D007308 5.9e-11 71.6 106 43.4
PSO210G6545 Papaver somniferum HOM05D005853 ORTHO05D007308 7.8e-11 71.2 43 72.1
SMO347G0073 Selaginella moellendorffii HOM05D005853 ORTHO05D007308 7.8e-11 71.2 35 85.7
Lsat_1_v5_gn_8_95440 Lactuca sativa HOM05D005853 ORTHO05D007308 1.3e-10 70.5 114 45.6
Zm00001eb247070 Zea mays HOM05D005853 ORTHO05D007308 1.3e-10 70.5 108 42.6
MD09G1211800 Malus domestica HOM05D005853 ORTHO05D007308 1.7e-10 70.1 100 44.0
TPR.G17682 Trifolium pratense HOM05D005853 ORTHO05D007308 2.3e-10 69.7 36 80.6
Mapoly0029s0025 Marchantia polymorpha HOM05D005853 ORTHO05D007308 2.9e-10 69.3 35 80.0
Sc12g0009330 Simmondsia chinensis HOM05D005853 ORTHO05D007308 2.9e-10 69.3 109 45.0
PGSC0003DMG400025300 Solanum tuberosum HOM05D005853 ORTHO05D007308 8.6e-10 67.8 103 43.7
RcHm_v2.0_Chr2g0138141 Rosa chinensis HOM05D005853 ORTHO05D007308 1.9e-09 66.6 98 44.9
FvH4_6g31380 Fragaria vesca HOM05D005853 ORTHO05D007308 3.3e-09 65.9 98 43.9
Sabra18G0067400 Salix brachista HOM05D005853 ORTHO05D007308 5.6e-09 65.1 52 55.8
Zm00001eb184630 Zea mays HOM05D005853 ORTHO05D007308 7.3e-09 64.7 112 40.2
SEGI_01601 Sequoiadendron giganteum HOM05D005853 ORTHO05D007308 3.6e-08 62.4 113 38.1
HPP92_004788 Vanilla planifolia HOM05D005853 ORTHO05D007308 3.6e-08 62.4 46 73.9
Oeu033500.1 Olea europaea HOM05D005853 ORTHO05D007308 6.8e-07 58.2 60 75.0


User provided reference genes

Program Settings