Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CiPaw.04G162900 Carya illinoinensis HOM05D005593 ORTHO05D006515 0.0e+00 1574.3 840 100.0
Cfa003241 Carpinus fangiana HOM05D005593 ORTHO05D006515 2.3e-263 912.5 856 64.1
CiPaw.03G229900 Carya illinoinensis HOM05D005593 ORTHO05D006515 3.3e-257 892.1 974 57.4
Haze_25764 Corylus avellana HOM05D005593 ORTHO05D006515 3.6e-248 862.1 865 60.8
QL02p044157 Quercus lobata HOM05D005593 ORTHO05D006515 2.5e-233 812.8 865 58.0
QL02p043456 Quercus lobata HOM05D005593 ORTHO05D006515 4.4e-230 802.0 824 59.7
Prupe.7G233100 Prunus persica HOM05D005593 ORTHO05D006515 1.6e-182 644.0 860 48.6
Thecc.09G108000 Theobroma cacao HOM05D005593 ORTHO05D006515 8.8e-178 628.2 860 47.4
Dinv36648 Davidia involucrata HOM05D005593 ORTHO05D006515 3.3e-177 626.3 874 47.6
Dinv41619 Davidia involucrata HOM05D005593 ORTHO05D006515 2.8e-176 623.2 877 46.8
Ciclev10007444m.g Citrus clementina HOM05D005593 ORTHO05D006515 9.1e-167 591.7 866 46.4
Duzib150G1551 Durio zibethinus HOM05D005593 ORTHO05D006515 1.8e-162 577.4 886 45.5
MD15G1182400 Malus domestica HOM05D005593 ORTHO05D006515 2.2e-160 570.5 830 46.6
RcHm_v2.0_Chr2g0090061 Rosa chinensis HOM05D005593 ORTHO05D006515 2.5e-156 557.0 876 44.3
TAR383G0262 Trochodendron aralioides HOM05D005593 ORTHO05D006515 3.3e-156 556.6 892 43.9
Duzib187G0236 Durio zibethinus HOM05D005593 ORTHO05D006515 8.3e-152 542.0 938 41.2
TWI63G0748 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 3.2e-151 540.0 895 42.1
Cpa.g.sc23.90 Carica papaya HOM05D005593 ORTHO05D006515 4.1e-151 539.7 913 41.9
Manes.16G114300 Manihot esculenta HOM05D005593 ORTHO05D006515 5.0e-149 532.7 894 41.3
FAN23G2457 Fragaria x ananassa HOM05D005593 ORTHO05D006515 1.5e-148 531.2 865 43.2
FAN26G1119 Fragaria x ananassa HOM05D005593 ORTHO05D006515 4.3e-148 529.6 875 42.4
FAN19G1075 Fragaria x ananassa HOM05D005593 ORTHO05D006515 2.1e-147 527.3 865 43.4
Gohir.A06G063700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 2.7e-142 510.4 910 41.1
Gorai.010G072700 Gossypium raimondii HOM05D005593 ORTHO05D006515 3.5e-142 510.0 887 41.7
FAN28G0021 Fragaria x ananassa HOM05D005593 ORTHO05D006515 3.0e-141 506.9 863 41.9
Gohir.D06G062400 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.1e-140 505.0 895 41.1
Potri.018G082300 Populus trichocarpa HOM05D005593 ORTHO05D006515 9.5e-140 501.9 905 41.2
GSVIVG01015371001 Vitis vinifera HOM05D005593 ORTHO05D006515 1.2e-134 485.0 693 47.6
CSS0003686 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 2.7e-134 483.8 972 39.0
Sabra18G0070100 Salix brachista HOM05D005593 ORTHO05D006515 2.8e-131 473.8 873 40.7
CANSAT56G2752 Cannabis sativa HOM05D005593 ORTHO05D006515 5.4e-127 459.5 899 41.5
Rhsim01G0100000 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.6e-126 458.0 1027 35.7
Manes.03G022200 Manihot esculenta HOM05D005593 ORTHO05D006515 1.7e-125 454.5 897 39.1
arahy.Tifrunner.gnm1.ann1.F0KYD5 Arachis hypogaea HOM05D005593 ORTHO05D006515 1.2e-123 448.4 856 40.4
Glyma.07G084900 Glycine max HOM05D005593 ORTHO05D006515 1.2e-123 448.4 870 41.7
Lalb_Chr22g0352731 Lupinus albus HOM05D005593 ORTHO05D006515 1.4e-122 444.9 857 40.1
vmacro20713 Vaccinium macrocarpon HOM05D005593 ORTHO05D006515 5.2e-122 443.0 1030 34.9
Lalb_Chr14g0371581 Lupinus albus HOM05D005593 ORTHO05D006515 2.4e-119 434.1 856 39.6
Nn2g11698 Nelumbo nucifera HOM05D005593 ORTHO05D006515 1.7e-117 427.9 906 38.4
Lj2g0010013 Lotus japonicus HOM05D005593 ORTHO05D006515 5.1e-117 426.4 857 39.7
Phvul.004G165100 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 2.5e-116 424.1 878 41.2
Psat1g043640 Pisum sativum HOM05D005593 ORTHO05D006515 1.8e-114 417.9 855 39.4
Glyma.09G192000 Glycine max HOM05D005593 ORTHO05D006515 6.9e-114 416.0 873 40.8
Nn3g18070 Nelumbo nucifera HOM05D005593 ORTHO05D006515 2.0e-113 414.5 904 37.5
CSS0038657 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.4e-113 413.7 968 36.5
VMungo0464G1894 Vigna mungo HOM05D005593 ORTHO05D006515 9.9e-113 412.1 875 38.7
Peaxi162Scf00231g00216 Petunia axillaris HOM05D005593 ORTHO05D006515 4.9e-112 409.8 893 35.2
TWI34G0806 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 2.4e-111 407.5 607 47.0
Medtr6g087760 Medicago truncatula HOM05D005593 ORTHO05D006515 1.8e-109 401.4 871 39.8
Gohir.D07G006300 Gossypium hirsutum HOM05D005593 ORTHO05D006515 1.2e-105 388.7 839 37.8
Gorai.001G005900 Gossypium raimondii HOM05D005593 ORTHO05D006515 1.2e-105 388.7 839 37.7
Oeu064588.2 Olea europaea HOM05D005593 ORTHO05D006515 2.6e-105 387.5 896 36.5
Ca_25537_v3 Cicer arietinum L. HOM05D005593 ORTHO05D006515 9.9e-105 385.6 854 38.1
Cc06_g09850 Coffea canephora HOM05D005593 ORTHO05D006515 2.2e-104 384.4 886 34.3
DCAR_012067 Daucus carota HOM05D005593 ORTHO05D006515 4.3e-100 370.2 913 35.0
Peaxi162Scf00207g01317 Petunia axillaris HOM05D005593 ORTHO05D006515 7.4e-100 369.4 869 35.0
Aqoxy7G01612 Aquilegia oxysepala HOM05D005593 ORTHO05D006515 3.4e-97 360.5 911 34.0
Nitab4.5_0000097g0120 Nicotiana tabacum HOM05D005593 ORTHO05D006515 7.6e-97 359.4 969 32.6
TPR.G10037 Trifolium pratense HOM05D005593 ORTHO05D006515 7.6e-97 359.4 872 35.7
Actinidia20382 Actinidia chinensis HOM05D005593 ORTHO05D006515 2.9e-96 357.5 803 36.1
Phvul.002G312500 Phaseolus vulgaris HOM05D005593 ORTHO05D006515 1.8e-93 348.2 859 36.2
Sc08g0007580 Simmondsia chinensis HOM05D005593 ORTHO05D006515 3.0e-93 347.4 884 33.4
PSO832G1383 Papaver somniferum HOM05D005593 ORTHO05D006515 9.6e-92 342.4 948 33.6
PSO782G3244 Papaver somniferum HOM05D005593 ORTHO05D006515 2.1e-91 341.3 954 32.9
Nitab4.5_0013892g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 3.7e-91 340.5 979 31.6
Peaxi162Scf01363g00023 Petunia axillaris HOM05D005593 ORTHO05D006515 3.7e-91 340.5 879 32.4
Glyma.08G037800 Glycine max HOM05D005593 ORTHO05D006515 4.1e-90 337.0 846 35.9
ClCG06G008720 Citrullus lanatus HOM05D005593 ORTHO05D006515 5.0e-88 330.1 857 34.1
Sed0013092 Sechium edule HOM05D005593 ORTHO05D006515 2.5e-87 327.8 850 35.2
PGSC0003DMG400015636 Solanum tuberosum HOM05D005593 ORTHO05D006515 4.3e-84 317.0 951 30.8
COL.COLO4_34842 Corchorus olitorius HOM05D005593 ORTHO05D006515 3.7e-83 313.9 655 37.9
VMungo0251G1265 Vigna mungo HOM05D005593 ORTHO05D006515 4.8e-83 313.5 859 33.9
MSTRG.19579 Avicennia marina HOM05D005593 ORTHO05D006515 2.4e-82 311.2 861 33.8
MELO3C024628.2 Cucumis melo HOM05D005593 ORTHO05D006515 9.1e-82 309.3 867 33.0
Dinv11466 Davidia involucrata HOM05D005593 ORTHO05D006515 3.8e-80 303.9 299 60.5
Glyma.05G230300 Glycine max HOM05D005593 ORTHO05D006515 3.8e-80 303.9 837 34.5
PGR142G3553 Punica granatum HOM05D005593 ORTHO05D006515 5.0e-80 303.5 864 32.6
Nitab4.5_0009314g0010 Nicotiana tabacum HOM05D005593 ORTHO05D006515 2.1e-78 298.1 877 30.6
Sopen07g016890 Solanum pennellii HOM05D005593 ORTHO05D006515 7.9e-78 296.2 916 30.5
Solyc07g032710.4 Solanum lycopersicum HOM05D005593 ORTHO05D006515 1.0e-77 295.8 911 30.4
CsaV3_1G024390 Cucumis sativus L. HOM05D005593 ORTHO05D006515 2.0e-76 291.6 830 33.4
Nitab4.5_0002904g0040 Nicotiana tabacum HOM05D005593 ORTHO05D006515 7.4e-76 289.7 854 31.4
PGSC0003DMG400000308 Solanum tuberosum HOM05D005593 ORTHO05D006515 1.4e-74 285.4 853 30.4
EL10Ac8g18455 Beta vulgaris HOM05D005593 ORTHO05D006515 4.1e-74 283.9 924 31.1
Sopen12g003130 Solanum pennellii HOM05D005593 ORTHO05D006515 4.5e-73 280.4 855 30.4
MBI04_g19171_MAGBIO Magnolia biondii HOM05D005593 ORTHO05D006515 1.6e-70 271.9 1068 27.7
AUR62010967 Chenopodium quinoa HOM05D005593 ORTHO05D006515 1.4e-69 268.9 910 30.1
ECA234G4430 Erigeron canadensis HOM05D005593 ORTHO05D006515 3.9e-69 267.3 861 31.2
HanXRQChr12g0355541 Helianthus annuus HOM05D000246 ORTHO05D008363 1.8e-66 258.5 843 30.0
SalBow6G5362 Salvia bowleyana HOM05D005593 ORTHO05D006515 7.0e-66 256.5 848 30.9
Lsat_1_v5_gn_5_103481 Lactuca sativa HOM05D005593 ORTHO05D006515 1.0e-64 252.7 849 30.6
AUR62021477 Chenopodium quinoa HOM05D005593 ORTHO05D006515 6.5e-64 250.0 901 29.0
Solyc12g007140.3 Solanum lycopersicum HOM05D005593 ORTHO05D006515 4.2e-63 247.3 746 31.0
Hund09560 Selenicereus undatus HOM05D005593 ORTHO05D006515 9.4e-63 246.1 929 29.9
Ah.14g082180 Amaranthus hybridus HOM05D005593 ORTHO05D006515 3.6e-62 244.2 879 29.8
ClCG11G002410 Citrullus lanatus HOM05D005593 ORTHO05D006515 1.4e-61 242.3 891 31.1
arahy.Tifrunner.gnm1.ann1.31F9U3 Arachis hypogaea HOM05D005593 ORTHO05D006515 4.0e-61 240.7 487 40.5
Gohir.A07G005700 Gossypium hirsutum HOM05D005593 ORTHO05D006515 3.3e-60 237.7 576 34.7
Ah.09g231030 Amaranthus hybridus HOM05D005593 ORTHO05D006515 7.2e-55 219.9 869 29.5
MELO3C004562.2 Cucumis melo HOM05D005593 ORTHO05D006515 7.2e-55 219.9 565 37.0
CsaV3_2G002210 Cucumis sativus L. HOM05D005593 ORTHO05D006515 6.1e-54 216.9 658 34.3
Hund09124 Selenicereus undatus HOM05D005593 ORTHO05D006515 1.0e-53 216.1 926 26.7
DCAR_028703 Daucus carota HOM05D005593 ORTHO05D006515 8.8e-53 213.0 735 29.9
Sed0018005 Sechium edule HOM05D005593 ORTHO05D006515 7.5e-52 209.9 617 36.1
THA.LOC104804597 Tarenaya hassleriana HOM05D005593 ORTHO05D006515 1.3e-48 199.1 854 30.0
Aa31sc586G30 Aethionema arabicum HOM05D005593 ORTHO05D006515 1.2e-46 192.6 849 27.8
Carub.0003s2504 Capsella rubella HOM05D005593 ORTHO05D006515 3.7e-43 181.0 862 27.1
AT3G24630 Arabidopsis thaliana HOM05D005593 ORTHO05D006515 1.4e-42 179.1 856 27.7
BraA07t28551Z Brassica rapa HOM05D005593 ORTHO05D006515 1.4e-42 179.1 859 26.8
A07p07590 Brassica napus HOM05D005593 ORTHO05D006515 2.4e-42 178.3 859 26.9
Lj7E653T1 Lonicera japonica HOM05D005593 ORTHO05D006515 2.7e-41 174.9 154 62.3
AL3G40252 Arabidopsis lyrata HOM05D005593 ORTHO05D006515 3.8e-40 171.0 872 26.8
Rhsim01G0098000 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.0e-40 170.6 160 58.1
Rhsim01G0099800 Rhododendron simsii HOM05D005593 ORTHO05D006515 5.0e-40 170.6 397 39.3
Sed0026051 Sechium edule HOM05D005593 ORTHO05D006515 7.3e-39 166.8 475 33.5
BcaC06g35744 Brassica carinata HOM05D005593 ORTHO05D006515 9.5e-39 166.4 877 26.0
C07p11350 Brassica napus HOM05D005593 ORTHO05D006515 6.1e-38 163.7 877 25.9
BcaB06g26676 Brassica carinata HOM05D005593 ORTHO05D006515 4.0e-37 161.0 874 26.1
BolC7t41613H Brassica oleracea HOM05D005593 ORTHO05D006515 5.2e-37 160.6 883 25.8
TWI34G0072 Tripterygium wilfordii HOM05D005593 ORTHO05D006515 8.9e-37 159.8 238 39.9
Sp3g22410 Schrenkiella parvula HOM05D005593 ORTHO05D006515 1.4e-34 152.5 866 26.3
Rhsim01G0099500 Rhododendron simsii HOM05D005593 ORTHO05D006515 1.2e-33 149.4 551 26.7
CARHR100960 Cardamine hirsuta HOM05D005593 ORTHO05D006515 7.8e-33 146.7 859 26.0
Thhalv10002425m.g Eutrema salsugineum HOM05D005593 ORTHO05D006515 1.0e-32 146.4 863 24.7
HPP92_023948 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.8e-29 135.6 767 25.6
Eucgr.C01030 Eucalyptus grandis HOM05D005593 ORTHO05D006515 2.4e-26 125.2 175 40.6
BolC7t41614H Brassica oleracea HOM05D005593 ORTHO05D006515 2.0e-25 122.1 287 34.5
CSS0008305 Camellia sinensis var. sinensis HOM05D005593 ORTHO05D006515 3.6e-22 111.3 206 34.0
ATR0315G161 Amborella trichopoda HOM05D005593 ORTHO05D006515 8.1e-22 110.2 910 23.6
Ciclev10018661m.g Citrus clementina HOM05D006788 ORTHO05D008265 8.6e-16 90.1 876 22.9
Cfa005599 Carpinus fangiana HOM05D005593 ORTHO05D006515 3.3e-15 88.2 55 80.0
SGA_v2.0_scaffold326G48711 Striga asiatica HOM05D006788 ORTHO05D008265 3.3e-15 88.2 872 22.4
Eucgr.F01564 Eucalyptus grandis HOM05D006788 ORTHO05D008265 1.2e-14 86.3 276 31.2
Hma1.2p1_0203F.1_g086400 Hydrangea macrophylla HOM05D006788 ORTHO05D008265 1.2e-14 86.3 905 23.1
HPP92_023915 Vanilla planifolia HOM05D005593 ORTHO05D006515 1.6e-14 85.9 392 27.8
Atru.chr13.488 Acer truncatum HOM05D006788 ORTHO05D008265 2.1e-14 85.5 234 32.9
Dinv36075 Davidia involucrata HOM05D006788 ORTHO05D008265 8.1e-14 83.6 957 22.9
CANSAT25G0680 Cannabis sativa HOM05D006788 ORTHO05D008265 5.8e-12 77.4 288 30.9
MD15G1031800 Malus domestica HOM05D006788 ORTHO05D008265 2.2e-11 75.5 840 23.5
FvH4_2g39870 Fragaria vesca HOM05D006788 ORTHO05D008265 2.9e-11 75.1 854 22.8
Actinidia15324 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.8e-11 74.7 314 30.9
Actinidia22550 Actinidia chinensis HOM05D006788 ORTHO05D008265 3.8e-11 74.7 250 30.8
Duzib116G0613 Durio zibethinus HOM05D006788 ORTHO05D008265 3.8e-11 74.7 974 23.0
Thecc.08G025800 Theobroma cacao HOM05D006788 ORTHO05D008265 3.8e-11 74.7 955 22.2
Nn5g29585 Nelumbo nucifera HOM05D006788 ORTHO05D008265 4.9e-11 74.3 211 32.7
THA.LOC104813209 Tarenaya hassleriana HOM05D006788 ORTHO05D008265 4.9e-11 74.3 164 34.8
CSS0005112 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 8.4e-11 73.6 226 32.7
CiPaw.15G077700 Carya illinoinensis HOM05D006788 ORTHO05D008265 8.4e-11 73.6 218 33.9
Rhsim06G0034200 Rhododendron simsii HOM05D006788 ORTHO05D008265 8.4e-11 73.6 205 35.1
CSS0004157 Camellia sinensis var. sinensis HOM05D006788 ORTHO05D008265 1.1e-10 73.2 226 32.7
Gohir.A06G010500 Gossypium hirsutum HOM05D006788 ORTHO05D008265 1.4e-10 72.8 452 27.4
Potri.002G261700 Populus trichocarpa HOM05D006788 ORTHO05D008265 1.4e-10 72.8 946 22.0
PGR083G0386 Punica granatum HOM05D006788 ORTHO05D008265 1.4e-10 72.8 841 23.7
TWI36G0908 Tripterygium wilfordii HOM05D006788 ORTHO05D008265 2.4e-10 72.0 932 24.0
COL.COLO4_26325 Corchorus olitorius HOM05D006788 ORTHO05D008265 4.1e-10 71.2 970 21.1
Duzib093G0366 Durio zibethinus HOM05D006788 ORTHO05D008265 4.1e-10 71.2 458 25.1
FAN27G2706 Fragaria x ananassa HOM05D006788 ORTHO05D008265 5.4e-10 70.9 839 23.0
TAR381G0400 Trochodendron aralioides HOM05D006788 ORTHO05D008265 5.4e-10 70.9 538 24.9
Gorai.009G202800 Gossypium raimondii HOM05D006788 ORTHO05D008265 9.2e-10 70.1 218 31.2
Lsat_1_v5_gn_5_29160 Lactuca sativa HOM05D006788 ORTHO05D008265 9.2e-10 70.1 785 22.5
FAN20G0511 Fragaria x ananassa HOM05D006788 ORTHO05D008265 1.2e-09 69.7 854 23.2
Gohir.D06G007900 Gossypium hirsutum HOM05D006788 ORTHO05D008265 2.7e-09 68.6 450 26.9
Gorai.010G010600 Gossypium raimondii HOM05D006788 ORTHO05D008265 2.7e-09 68.6 450 26.9
Zm00001eb339200 Zea mays HOM05D042755 ORTHO05D006515 2.7e-09 68.6 754 23.7
ATR0733G187 Amborella trichopoda HOM05D006788 ORTHO05D008265 7.8e-09 67.0 265 29.4
MSTRG.24293 Avicennia marina HOM05D006788 ORTHO05D008265 1.3e-08 66.2 229 31.9
AUR62027306 Chenopodium quinoa HOM05D006788 ORTHO05D008265 1.3e-08 66.2 214 31.8
MD08G1035200 Malus domestica HOM05D006788 ORTHO05D008265 1.7e-08 65.9 857 23.0
Solyc04g080270.4 Solanum lycopersicum HOM05D006788 ORTHO05D008265 3.9e-08 64.7 952 21.7
CDE02G1606 Ceratophyllum demersum HOM05D005593 ORTHO05D006515 5.1e-08 64.3 262 24.4
AUR62007432 Chenopodium quinoa HOM05D006788 ORTHO05D008265 5.1e-08 64.3 209 31.1
CARHR181620 Cardamine hirsuta HOM05D006788 ORTHO05D008265 6.6e-08 63.9 457 22.5
RcHm_v2.0_Chr5g0052261 Rosa chinensis HOM05D006788 ORTHO05D008265 8.7e-08 63.5 870 23.2
Os01g0228800 Oryza sativa ssp. japonica HOM05D042755 ORTHO05D006515 1.1e-07 63.2 206 31.6
Prupe.1G380200 Prunus persica HOM05D006788 ORTHO05D008265 1.1e-07 63.2 911 23.2
Migut.N00496 Erythranthe guttata HOM05D006788 ORTHO05D008265 1.9e-07 62.4 841 22.4
Sopen04g033860 Solanum pennellii HOM05D006788 ORTHO05D008265 1.9e-07 62.4 953 21.5
QL02p008476 Quercus lobata HOM05D006788 ORTHO05D008265 3.3e-07 61.6 946 22.9
HPP92_023926 Vanilla planifolia HOM05D005593 ORTHO05D006515 5.6e-07 60.8 126 35.7
Duzib041G0403 Durio zibethinus HOM05D006788 ORTHO05D008265 7.3e-07 60.5 238 29.0
ClCG05G019050 Citrullus lanatus HOM05D006788 ORTHO05D008265 9.6e-07 60.1 129 34.1
Ah.08g219690 Amaranthus hybridus HOM05D006788 ORTHO05D008265 2.8e-06 58.5 901 21.9
Nitab4.5_0000110g0630 Nicotiana tabacum HOM05D006788 ORTHO05D008265 4.7e-06 57.8 630 25.6
Manes.05G160500 Manihot esculenta HOM05D006788 ORTHO05D008265 8.1e-06 57.0 967 22.2


User provided reference genes

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